Wall clock time and date at job start Tue Mar 31 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48501 * 109.46620 * 269.99377 * 3 2 1 5 5 H 1.48495 * 109.47160 * 29.99486 * 3 2 1 6 6 H 1.48493 * 109.47165 * 149.99800 * 3 2 1 7 7 C 1.37874 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00251 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99719 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46986 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47543 * 61.13161 * 12 11 10 14 14 C 1.46635 * 111.00124 * 55.37136 * 13 12 11 15 15 C 1.50970 * 112.06264 * 205.91583 * 14 13 12 16 16 C 1.51393 * 115.30281 * 288.20549 * 15 14 13 17 17 C 1.53342 * 110.64013 * 70.03147 * 16 15 14 18 18 C 1.52417 * 107.28604 * 281.67122 * 17 16 15 19 19 S 1.75737 * 125.12791 * 245.60655 * 18 17 16 20 20 C 1.75819 * 90.88950 * 180.91611 * 19 18 17 21 21 C 1.33120 * 109.62575 * 359.82973 * 20 19 18 22 22 C 1.33584 * 124.47773 * 66.12802 * 18 17 16 23 23 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46811 * 60.00127 * 9 7 2 25 25 H 1.08997 * 109.47262 * 300.00236 * 9 7 2 26 26 H 1.09003 * 109.47780 * 59.99807 * 11 10 9 27 27 H 1.09005 * 109.47263 * 299.99742 * 11 10 9 28 28 H 1.09000 * 109.46981 * 301.12501 * 12 11 10 29 29 H 1.09003 * 109.46807 * 181.13341 * 12 11 10 30 30 H 1.09004 * 108.95987 * 85.25549 * 14 13 12 31 31 H 1.08997 * 108.97187 * 326.58776 * 14 13 12 32 32 H 1.08999 * 108.32066 * 166.69176 * 15 14 13 33 33 H 1.09000 * 108.31126 * 49.71674 * 15 14 13 34 34 H 1.08993 * 109.24424 * 309.73125 * 16 15 14 35 35 H 1.09004 * 109.24264 * 190.32430 * 16 15 14 36 36 H 1.08999 * 109.89204 * 162.22111 * 17 16 15 37 37 H 1.09003 * 109.95527 * 41.14942 * 17 16 15 38 38 H 1.08005 * 125.18277 * 179.82987 * 20 19 18 39 39 H 1.07995 * 122.30564 * 180.11860 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4124 -2.6541 0.0021 12 6 5.8069 -4.1324 0.0012 13 7 5.2882 -4.7770 -1.2125 14 6 5.7463 -4.0763 -2.4164 15 6 4.8019 -4.2687 -3.5784 16 6 4.8074 -5.6516 -4.1946 17 6 4.1778 -6.6718 -3.2385 18 6 5.2249 -7.0106 -2.1840 19 16 5.9785 -8.5846 -1.9764 20 6 6.9161 -7.9865 -0.6146 21 6 6.6299 -6.7037 -0.4037 22 6 5.6921 -6.1476 -1.2776 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6804 -0.8888 26 1 5.8146 -2.1708 0.8926 27 1 5.8159 -2.1702 -0.8874 28 1 5.3866 -4.6211 0.8802 29 1 6.8934 -4.2184 0.0224 30 1 6.7304 -4.4544 -2.6934 31 1 5.8265 -3.0115 -2.1978 32 1 5.0609 -3.5474 -4.3535 33 1 3.7901 -4.0496 -3.2374 34 1 5.8350 -5.9457 -4.4079 35 1 4.2393 -5.6328 -5.1247 36 1 3.8993 -7.5715 -3.7871 37 1 3.2974 -6.2409 -2.7618 38 1 7.6172 -8.5709 -0.0372 39 1 7.0939 -6.1310 0.3856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590178744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:30 Heat of formation + Delta-G solvation = -3.743184 kcal Electronic energy + Delta-G solvation = -20150.873926 eV Core-core repulsion = 17185.390087 eV Total energy + Delta-G solvation = -2965.483839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93710 -37.03279 -35.59919 -34.55658 -32.57043 -30.58629 -29.60179 -27.64453 -26.06005 -24.93297 -22.09899 -21.84888 -21.69326 -20.29280 -18.28960 -17.31826 -16.87059 -16.29027 -15.74118 -15.68251 -14.67256 -14.38019 -14.18211 -13.98116 -13.77105 -13.64477 -13.05043 -12.80372 -12.61833 -12.50609 -12.21010 -11.98584 -11.54383 -11.38778 -11.09165 -10.93303 -10.80079 -10.74802 -10.63455 -10.48441 -10.27023 -9.84491 -9.17870 -9.11986 -8.80695 -8.55553 -8.43478 -7.65451 -6.09241 -4.07763 1.05062 1.64228 1.96113 2.69211 3.24722 3.31899 3.32885 3.96200 4.36604 4.58690 4.70557 4.87284 5.01707 5.12828 5.15267 5.21863 5.24336 5.39365 5.47360 5.50003 5.56388 5.73313 5.77731 5.82919 5.87404 5.98494 6.05468 6.07950 6.16670 6.22983 6.24953 6.46077 6.56048 6.60266 7.00582 7.17643 7.29358 7.61968 8.05108 8.69667 9.04255 9.50305 11.03947 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.004090 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.626141 B = 6844.805196 C = 7192.489244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.362 6.362 11 C 0.055 3.945 12 C 0.059 3.941 13 N -0.448 5.448 14 C 0.055 3.945 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.038 4.038 18 C -0.187 4.187 19 S 0.089 5.911 20 C -0.208 4.208 21 C -0.153 4.153 22 C 0.075 3.925 23 H 0.266 0.734 24 H 0.000 1.000 25 H -0.004 1.004 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.293 -13.855 -5.668 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.280 6.280 11 C -0.023 4.023 12 C -0.069 4.069 13 N -0.167 5.167 14 C -0.071 4.071 15 C -0.158 4.158 16 C -0.147 4.147 17 C -0.078 4.078 18 C -0.307 4.307 19 S 0.351 5.649 20 C -0.344 4.344 21 C -0.186 4.186 22 C -0.031 4.031 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.180 0.820 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.359 -15.188 -6.364 22.518 hybrid contribution 1.567 2.485 0.942 3.085 sum 16.926 -12.703 -5.423 21.846 Atomic orbital electron populations 1.69878 1.06041 1.26991 1.50552 1.24760 0.94766 0.98638 0.94766 0.86876 0.80347 0.83950 0.78710 1.19979 1.20816 1.19194 1.20883 0.88243 0.95300 1.50829 0.89882 1.20597 0.96289 0.79838 0.94067 1.88048 1.16369 1.28768 1.94860 1.22502 0.86206 0.94286 0.99263 1.22297 0.96733 0.94761 0.93092 1.60446 1.55882 0.97784 1.02582 1.21796 0.96176 0.99393 0.89715 1.20857 1.02169 0.96453 0.96342 1.21255 1.00669 0.94956 0.97773 1.20529 0.95394 0.98633 0.93205 1.24263 1.06387 0.95081 1.04943 1.84040 1.38615 1.12473 1.29786 1.25230 1.06991 0.99058 1.03095 1.20474 0.99849 0.95674 1.02617 1.18591 0.96150 0.92143 0.96195 0.92418 0.98204 0.98638 0.93630 0.94001 0.89406 0.93486 0.94880 0.89621 0.91867 0.90102 0.92483 0.91375 0.91446 0.89033 0.82035 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.51 -15.38 9.99 -34.44 -0.34 -15.72 16 8 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.17 4.25 4.76 36.01 0.17 4.42 16 10 O -0.36 -8.40 10.21 -35.23 -0.36 -8.76 16 11 C 0.06 0.95 5.76 37.16 0.21 1.16 16 12 C 0.06 0.86 4.37 -3.82 -0.02 0.85 16 13 N -0.45 -7.00 4.60 -172.72 -0.79 -7.79 16 14 C 0.06 0.78 5.05 -4.99 -0.03 0.75 16 15 C -0.12 -1.61 5.36 -28.56 -0.15 -1.77 16 16 C -0.11 -1.25 5.66 -27.37 -0.15 -1.40 16 17 C -0.04 -0.48 6.07 -26.85 -0.16 -0.64 16 18 C -0.19 -2.48 5.68 -35.08 -0.20 -2.68 16 19 S 0.09 0.97 23.33 -107.50 -2.51 -1.53 16 20 C -0.21 -2.21 11.21 28.95 0.32 -1.89 16 21 C -0.15 -1.87 9.07 -40.81 -0.37 -2.24 16 22 C 0.07 1.06 5.18 -83.68 -0.43 0.63 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 25 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.67 5.79 -51.93 -0.30 0.37 16 28 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 29 H 0.05 0.56 7.04 -51.93 -0.37 0.20 16 30 H 0.03 0.43 7.80 -51.93 -0.41 0.02 16 31 H 0.09 1.24 5.12 -51.93 -0.27 0.98 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.30 7.97 -51.93 -0.41 0.89 16 34 H 0.06 0.64 7.94 -51.93 -0.41 0.22 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 38 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.14 1.49 6.52 -52.49 -0.34 1.15 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -32.23 319.90 -9.79 -42.02 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.81 Total: -1.98 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.25 Total: -16.49 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.02 Total: -34.81 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.36 Total: -8.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.23 -9.79 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590178744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.274 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds