Wall clock time and date at job start Tue Mar 31 2020 05:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48501 * 109.46620 * 269.99377 * 3 2 1 5 5 H 1.48495 * 109.47160 * 29.99486 * 3 2 1 6 6 H 1.48493 * 109.47165 * 149.99800 * 3 2 1 7 7 C 1.37874 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00251 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99719 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46986 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47543 * 61.13161 * 12 11 10 14 14 C 1.46635 * 111.00124 * 55.37136 * 13 12 11 15 15 C 1.50970 * 112.06264 * 205.91583 * 14 13 12 16 16 C 1.51393 * 115.30281 * 288.20549 * 15 14 13 17 17 C 1.53342 * 110.64013 * 70.03147 * 16 15 14 18 18 C 1.52417 * 107.28604 * 281.67122 * 17 16 15 19 19 S 1.75737 * 125.12791 * 245.60655 * 18 17 16 20 20 C 1.75819 * 90.88950 * 180.91611 * 19 18 17 21 21 C 1.33120 * 109.62575 * 359.82973 * 20 19 18 22 22 C 1.33584 * 124.47773 * 66.12802 * 18 17 16 23 23 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46811 * 60.00127 * 9 7 2 25 25 H 1.08997 * 109.47262 * 300.00236 * 9 7 2 26 26 H 1.09003 * 109.47780 * 59.99807 * 11 10 9 27 27 H 1.09005 * 109.47263 * 299.99742 * 11 10 9 28 28 H 1.09000 * 109.46981 * 301.12501 * 12 11 10 29 29 H 1.09003 * 109.46807 * 181.13341 * 12 11 10 30 30 H 1.09004 * 108.95987 * 85.25549 * 14 13 12 31 31 H 1.08997 * 108.97187 * 326.58776 * 14 13 12 32 32 H 1.08999 * 108.32066 * 166.69176 * 15 14 13 33 33 H 1.09000 * 108.31126 * 49.71674 * 15 14 13 34 34 H 1.08993 * 109.24424 * 309.73125 * 16 15 14 35 35 H 1.09004 * 109.24264 * 190.32430 * 16 15 14 36 36 H 1.08999 * 109.89204 * 162.22111 * 17 16 15 37 37 H 1.09003 * 109.95527 * 41.14942 * 17 16 15 38 38 H 1.08005 * 125.18277 * 179.82987 * 20 19 18 39 39 H 1.07995 * 122.30564 * 180.11860 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4124 -2.6541 0.0021 12 6 5.8069 -4.1324 0.0012 13 7 5.2882 -4.7770 -1.2125 14 6 5.7463 -4.0763 -2.4164 15 6 4.8019 -4.2687 -3.5784 16 6 4.8074 -5.6516 -4.1946 17 6 4.1778 -6.6718 -3.2385 18 6 5.2249 -7.0106 -2.1840 19 16 5.9785 -8.5846 -1.9764 20 6 6.9161 -7.9865 -0.6146 21 6 6.6299 -6.7037 -0.4037 22 6 5.6921 -6.1476 -1.2776 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8753 -0.6804 -0.8888 26 1 5.8146 -2.1708 0.8926 27 1 5.8159 -2.1702 -0.8874 28 1 5.3866 -4.6211 0.8802 29 1 6.8934 -4.2184 0.0224 30 1 6.7304 -4.4544 -2.6934 31 1 5.8265 -3.0115 -2.1978 32 1 5.0609 -3.5474 -4.3535 33 1 3.7901 -4.0496 -3.2374 34 1 5.8350 -5.9457 -4.4079 35 1 4.2393 -5.6328 -5.1247 36 1 3.8993 -7.5715 -3.7871 37 1 3.2974 -6.2409 -2.7618 38 1 7.6172 -8.5709 -0.0372 39 1 7.0939 -6.1310 0.3856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590178744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:29 Heat of formation + Delta-G solvation = -24.644956 kcal Electronic energy + Delta-G solvation = -20151.780295 eV Core-core repulsion = 17185.390087 eV Total energy + Delta-G solvation = -2966.390208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97958 -38.63267 -36.59350 -35.77436 -34.75191 -31.58737 -31.07761 -29.44905 -27.23973 -25.92073 -23.97492 -22.98081 -22.95408 -21.34740 -19.36622 -18.99084 -18.25998 -17.45992 -17.37524 -16.89795 -16.35159 -15.91047 -15.29008 -15.03591 -14.90778 -14.79487 -14.66078 -14.33816 -13.86542 -13.72956 -13.39737 -13.24976 -12.97683 -12.77155 -12.51593 -12.45027 -12.18641 -11.85059 -11.82390 -11.70665 -11.51473 -11.50122 -11.26027 -10.90667 -10.29780 -10.12003 -9.43920 -8.64532 -8.36174 -6.43852 0.14232 0.75783 1.06694 1.32685 1.36268 1.46985 1.74027 2.29724 2.87097 2.96419 3.12545 3.78397 3.83410 3.96064 4.09382 4.13818 4.24917 4.29147 4.34739 4.43179 4.48909 4.58282 4.61006 4.70636 4.82288 4.86872 4.88790 4.99604 5.02223 5.11033 5.15041 5.20158 5.26074 5.42671 5.45375 5.51933 5.94723 6.12655 6.25204 6.60700 6.79872 7.20793 8.81416 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.004090 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.626141 B = 6844.805196 C = 7192.489244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.025 0.975 9 C 0.180 3.820 10 O -0.392 6.392 11 C 0.047 3.953 12 C 0.065 3.935 13 N -0.478 5.478 14 C 0.057 3.943 15 C -0.119 4.119 16 C -0.101 4.101 17 C -0.039 4.039 18 C -0.212 4.212 19 S 0.118 5.882 20 C -0.197 4.197 21 C -0.172 4.172 22 C 0.058 3.942 23 H 0.272 0.728 24 H 0.011 0.989 25 H 0.009 0.991 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.192 0.808 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.432 -13.618 -5.925 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.580 4.580 8 H 0.044 0.956 9 C 0.104 3.896 10 O -0.311 6.311 11 C -0.030 4.030 12 C -0.063 4.063 13 N -0.197 5.197 14 C -0.069 4.069 15 C -0.157 4.157 16 C -0.139 4.139 17 C -0.078 4.078 18 C -0.331 4.331 19 S 0.381 5.619 20 C -0.333 4.333 21 C -0.204 4.204 22 C -0.048 4.048 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.210 0.790 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 18.514 -14.981 -6.623 24.720 hybrid contribution 0.540 2.238 1.024 2.520 sum 19.054 -12.743 -5.599 23.596 Atomic orbital electron populations 1.70045 1.08346 1.28724 1.51289 1.25850 0.95768 1.03402 0.93481 0.85599 0.79454 0.77424 0.79790 1.18355 1.19895 1.16778 1.21146 0.91093 0.93630 1.52087 0.95623 1.20284 0.93197 0.81310 0.94802 1.88004 1.20460 1.27516 1.95119 1.22863 0.82834 0.96522 1.00795 1.22251 0.98537 0.92867 0.92596 1.60397 1.57162 0.98992 1.03151 1.21778 0.96802 0.98841 0.89475 1.20875 0.99864 0.98202 0.96776 1.21211 1.01419 0.93426 0.97876 1.20494 0.94413 0.99481 0.93442 1.24492 1.06861 0.96520 1.05243 1.83909 1.37863 1.10519 1.29640 1.25641 1.06429 0.98674 1.02516 1.20571 1.00245 0.96537 1.03085 1.18814 0.97156 0.91574 0.97279 0.91851 0.97148 0.97347 0.91786 0.92529 0.90494 0.90037 0.93479 0.90385 0.90423 0.93883 0.91397 0.89893 0.89679 0.92087 0.79050 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.01 0.76 5.47 84.65 0.46 1.22 16 3 Si 0.96 43.63 27.47 68.60 1.88 45.52 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 7 C -0.54 -33.69 9.99 25.60 0.26 -33.43 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.18 9.12 4.76 71.24 0.34 9.46 16 10 O -0.39 -18.51 10.21 -148.98 -1.52 -20.03 16 11 C 0.05 1.55 5.76 71.98 0.41 1.97 16 12 C 0.06 1.84 4.37 86.31 0.38 2.22 16 13 N -0.48 -14.91 4.60 -700.36 -3.22 -18.12 16 14 C 0.06 1.58 5.05 85.69 0.43 2.01 16 15 C -0.12 -3.24 5.36 29.41 0.16 -3.08 16 16 C -0.10 -2.28 5.66 30.18 0.17 -2.11 16 17 C -0.04 -0.98 6.07 30.52 0.19 -0.79 16 18 C -0.21 -5.47 5.68 25.18 0.14 -5.33 16 19 S 0.12 2.35 23.33 -56.49 -1.32 1.04 16 20 C -0.20 -3.65 11.21 66.67 0.75 -2.90 16 21 C -0.17 -3.86 9.07 21.48 0.19 -3.67 16 22 C 0.06 1.59 5.18 36.61 0.19 1.78 16 23 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 24 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 25 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.72 5.79 -2.38 -0.01 1.71 16 28 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 29 H 0.08 1.75 7.04 -2.39 -0.02 1.73 16 30 H 0.05 1.15 7.80 -2.39 -0.02 1.13 16 31 H 0.08 2.22 5.12 -2.39 -0.01 2.20 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.48 7.97 -2.39 -0.02 1.46 16 34 H 0.07 1.40 7.94 -2.39 -0.02 1.38 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 38 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 2.89 6.52 -2.91 -0.02 2.87 16 Total: -1.00 -73.09 319.90 1.17 -71.91 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.98 Total: 12.44 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.07 Total: -32.65 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.92 Total: -78.23 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.52 Total: -20.03 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.32 Total: 1.04 kcal Total: -73.09 1.17 -71.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590178744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.267 kcal (2) G-P(sol) polarization free energy of solvation -73.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds