Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50709 * 125.19972 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46862 * 270.01996 * 6 5 4 8 8 C 1.34770 * 120.00014 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99889 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00144 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47219 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46882 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46879 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47216 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99832 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00434 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99683 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00419 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47175 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47622 * 119.99978 * 18 16 14 21 21 H 1.48506 * 109.46795 * 240.00063 * 18 16 14 22 22 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 23 23 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 24 24 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 25 25 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 26 26 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47224 * 30.02114 * 6 5 4 28 28 H 1.08995 * 109.46643 * 150.02296 * 6 5 4 29 29 H 0.97002 * 119.99693 * 359.97438 * 7 6 5 30 30 H 1.08998 * 109.47287 * 299.99957 * 10 8 7 31 31 H 1.09006 * 109.47285 * 59.99975 * 10 8 7 32 32 H 1.08998 * 109.47196 * 300.00307 * 11 10 8 33 33 H 1.09001 * 109.46858 * 60.00441 * 11 10 8 34 34 H 1.08998 * 109.47332 * 300.00072 * 12 11 10 35 35 H 1.08999 * 109.47632 * 59.99883 * 12 11 10 36 36 H 1.08998 * 109.46893 * 299.99968 * 13 12 11 37 37 H 1.09001 * 109.47165 * 60.00104 * 13 12 11 38 38 H 0.96993 * 120.00076 * 179.97438 * 17 16 14 39 39 H 1.07997 * 122.54195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5981 -2.0955 0.0052 7 7 4.9360 -2.4510 -1.3753 8 6 5.8374 -3.4227 -1.6195 9 8 6.3683 -4.0032 -0.6965 10 6 6.1846 -3.7887 -3.0395 11 6 7.2247 -4.9109 -3.0372 12 6 7.5777 -5.2820 -4.4789 13 6 8.6173 -6.4046 -4.4765 14 6 8.9646 -6.7707 -5.8965 15 1 8.4914 -6.2540 -6.7185 16 6 9.8871 -7.7644 -6.1465 17 7 10.4644 -8.3926 -5.1455 18 14 10.3180 -8.2177 -7.9066 19 1 9.5366 -7.3691 -8.8418 20 1 11.7691 -7.9982 -8.1333 21 1 9.9905 -9.6465 -8.1441 22 6 2.2516 -1.1669 -0.0030 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.8155 2.1241 0.0004 27 1 5.4955 -1.7581 0.5236 28 1 4.1899 -2.9679 0.5155 29 1 4.5105 -1.9874 -2.1135 30 1 5.2870 -4.1260 -3.5577 31 1 6.5929 -2.9165 -3.5502 32 1 8.1223 -4.5733 -2.5191 33 1 6.8169 -5.7832 -2.5265 34 1 6.6803 -5.6195 -4.9973 35 1 7.9857 -4.4096 -4.9893 36 1 9.5148 -6.0675 -3.9580 37 1 8.2089 -7.2770 -3.9664 38 1 11.1131 -9.0919 -5.3213 39 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590774159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = -38.202993 kcal Electronic energy + Delta-G solvation = -18201.725454 eV Core-core repulsion = 15234.747326 eV Total energy + Delta-G solvation = -2966.978128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -39.77223 -38.68382 -35.33985 -34.73109 -32.62977 -31.68899 -29.76371 -28.28195 -26.76816 -25.21421 -22.51866 -21.79895 -20.31539 -19.94428 -19.37418 -17.75193 -16.66863 -16.26762 -15.99435 -15.77030 -15.18191 -14.43522 -14.40021 -14.29957 -13.63663 -13.59779 -13.30747 -13.04996 -12.60469 -12.38086 -12.32542 -12.12022 -11.91914 -11.66817 -11.56589 -11.09817 -10.97824 -10.51554 -10.46936 -10.38905 -9.92310 -9.59115 -9.25906 -9.22606 -9.07526 -8.93359 -8.72482 -8.28920 -5.93538 -3.95869 0.49592 1.21238 1.59850 2.20343 2.72103 3.25856 3.34359 3.41478 3.45548 4.19304 4.50516 4.59695 4.75088 4.90384 4.95207 5.08910 5.19195 5.20141 5.33596 5.39625 5.41674 5.42357 5.50039 5.71788 5.88487 5.96161 6.08349 6.16630 6.23255 6.33337 6.57454 6.86767 7.04731 7.22510 7.41216 7.76575 7.92514 8.08207 8.24280 8.50042 9.12122 9.67669 11.17830 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041845 B = 0.002173 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.983143 B =12882.510053 C =13038.366974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.106 4.106 3 C -0.215 4.215 4 S 0.114 5.886 5 C -0.198 4.198 6 C 0.192 3.808 7 N -0.736 5.736 8 C 0.513 3.487 9 O -0.534 6.534 10 C -0.138 4.138 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.113 4.113 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.164 0.836 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.401 0.599 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.547 20.914 11.241 31.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.350 4.350 4 S 0.380 5.620 5 C -0.316 4.316 6 C 0.067 3.933 7 N -0.390 5.390 8 C 0.301 3.699 9 O -0.410 6.410 10 C -0.178 4.178 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.145 4.145 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.181 0.819 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.236 0.764 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.649 21.222 11.975 30.685 hybrid contribution -1.247 -0.762 -1.263 1.931 sum -19.896 20.459 10.713 30.483 Atomic orbital electron populations 1.20530 0.89624 1.02829 1.02461 1.18949 0.97610 0.91870 1.03371 1.25543 0.96050 1.02472 1.10983 1.84453 1.05758 0.99489 1.72316 1.24492 0.97841 0.97558 1.11697 1.19593 0.95215 0.93765 0.84721 1.46207 1.45117 1.39884 1.07805 1.21145 0.77825 0.78333 0.92640 1.90715 1.51770 1.51924 1.46583 1.21799 1.02099 1.01826 0.92055 1.21456 0.97209 0.96279 0.99189 1.21649 1.00040 1.00058 0.93048 1.19106 0.93288 0.92616 0.96805 1.21324 1.23098 1.18621 0.92668 0.92705 1.25054 0.96280 0.96407 0.96944 1.69988 1.28426 1.24595 1.30458 0.86551 0.78137 0.78213 0.85170 1.19793 1.21070 1.21070 1.20108 0.92193 0.99709 1.02445 0.91087 0.91324 0.91557 0.81850 0.90473 0.89645 0.76431 0.89076 0.89089 0.91792 0.91781 0.93477 0.93473 0.96573 0.96575 0.93118 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.14 36.01 0.37 -0.10 16 2 C -0.11 -0.74 5.80 -106.25 -0.62 -1.35 16 3 C -0.21 -1.46 10.98 29.04 0.32 -1.14 16 4 S 0.11 0.88 23.33 -107.50 -2.51 -1.63 16 5 C -0.20 -1.65 5.88 -36.00 -0.21 -1.86 16 6 C 0.19 1.88 6.16 -5.19 -0.03 1.85 16 7 N -0.74 -7.60 5.55 -61.47 -0.34 -7.94 16 8 C 0.51 7.16 7.83 -10.99 -0.09 7.08 16 9 O -0.53 -9.74 15.98 5.56 0.09 -9.65 16 10 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.11 -0.86 9.85 -41.21 -0.41 -1.27 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 25 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 26 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.40 3.23 8.46 -40.82 -0.35 2.88 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -33.80 346.89 -9.67 -43.48 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.22 Total: -2.79 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.63 Total: -16.75 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.40 Total: -34.92 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.80 -9.67 -43.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590774159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.276 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds