Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50709 * 125.19972 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46862 * 270.01996 * 6 5 4 8 8 C 1.34770 * 120.00014 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99889 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00144 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47219 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46882 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46879 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47216 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99832 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00434 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99683 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00419 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47175 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47622 * 119.99978 * 18 16 14 21 21 H 1.48506 * 109.46795 * 240.00063 * 18 16 14 22 22 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 23 23 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 24 24 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 25 25 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 26 26 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47224 * 30.02114 * 6 5 4 28 28 H 1.08995 * 109.46643 * 150.02296 * 6 5 4 29 29 H 0.97002 * 119.99693 * 359.97438 * 7 6 5 30 30 H 1.08998 * 109.47287 * 299.99957 * 10 8 7 31 31 H 1.09006 * 109.47285 * 59.99975 * 10 8 7 32 32 H 1.08998 * 109.47196 * 300.00307 * 11 10 8 33 33 H 1.09001 * 109.46858 * 60.00441 * 11 10 8 34 34 H 1.08998 * 109.47332 * 300.00072 * 12 11 10 35 35 H 1.08999 * 109.47632 * 59.99883 * 12 11 10 36 36 H 1.08998 * 109.46893 * 299.99968 * 13 12 11 37 37 H 1.09001 * 109.47165 * 60.00104 * 13 12 11 38 38 H 0.96993 * 120.00076 * 179.97438 * 17 16 14 39 39 H 1.07997 * 122.54195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5981 -2.0955 0.0052 7 7 4.9360 -2.4510 -1.3753 8 6 5.8374 -3.4227 -1.6195 9 8 6.3683 -4.0032 -0.6965 10 6 6.1846 -3.7887 -3.0395 11 6 7.2247 -4.9109 -3.0372 12 6 7.5777 -5.2820 -4.4789 13 6 8.6173 -6.4046 -4.4765 14 6 8.9646 -6.7707 -5.8965 15 1 8.4914 -6.2540 -6.7185 16 6 9.8871 -7.7644 -6.1465 17 7 10.4644 -8.3926 -5.1455 18 14 10.3180 -8.2177 -7.9066 19 1 9.5366 -7.3691 -8.8418 20 1 11.7691 -7.9982 -8.1333 21 1 9.9905 -9.6465 -8.1441 22 6 2.2516 -1.1669 -0.0030 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.8155 2.1241 0.0004 27 1 5.4955 -1.7581 0.5236 28 1 4.1899 -2.9679 0.5155 29 1 4.5105 -1.9874 -2.1135 30 1 5.2870 -4.1260 -3.5577 31 1 6.5929 -2.9165 -3.5502 32 1 8.1223 -4.5733 -2.5191 33 1 6.8169 -5.7832 -2.5265 34 1 6.6803 -5.6195 -4.9973 35 1 7.9857 -4.4096 -4.9893 36 1 9.5148 -6.0675 -3.9580 37 1 8.2089 -7.2770 -3.9664 38 1 11.1131 -9.0919 -5.3213 39 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590774159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = -58.882732 kcal Electronic energy + Delta-G solvation = -18202.622195 eV Core-core repulsion = 15234.747326 eV Total energy + Delta-G solvation = -2967.874869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84471 -39.29895 -36.73317 -36.01359 -34.60514 -32.53285 -31.32458 -28.91012 -27.84756 -26.68143 -24.11478 -22.58273 -21.80313 -21.31167 -19.91418 -18.52413 -18.40761 -17.60601 -17.03520 -16.90787 -16.48136 -15.95082 -15.58060 -14.89660 -14.67374 -14.53215 -14.51669 -13.95410 -13.69848 -13.59677 -13.57650 -13.25922 -12.86273 -12.84689 -12.73766 -12.56151 -12.30771 -12.14409 -12.12954 -11.65896 -11.36975 -11.36065 -11.16793 -10.86370 -10.55246 -10.19369 -9.70011 -9.28847 -8.18366 -6.30380 -0.08577 0.63156 1.04532 1.40656 1.41665 1.55173 1.62375 1.63807 2.33397 2.42734 3.14258 3.53612 3.84766 4.06231 4.11046 4.15993 4.21075 4.39273 4.51488 4.56704 4.69688 4.70641 4.75974 4.85380 4.87546 4.89324 5.09596 5.14958 5.20437 5.29872 5.34152 5.41223 5.47037 5.58105 5.58495 5.79114 5.88959 6.25983 6.49985 6.88348 7.22132 7.39121 8.94073 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041845 B = 0.002173 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.983143 B =12882.510053 C =13038.366974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.210 4.210 4 S 0.101 5.899 5 C -0.211 4.211 6 C 0.195 3.805 7 N -0.716 5.716 8 C 0.514 3.486 9 O -0.586 6.586 10 C -0.128 4.128 11 C -0.096 4.096 12 C -0.096 4.096 13 C 0.017 3.983 14 C -0.540 4.540 15 H 0.066 0.934 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.257 1.257 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.109 4.109 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.184 0.816 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.416 0.584 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.060 0.940 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.263 0.737 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.534 22.613 9.533 33.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.345 4.345 4 S 0.367 5.633 5 C -0.329 4.329 6 C 0.070 3.930 7 N -0.370 5.370 8 C 0.302 3.698 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.134 4.134 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.181 1.181 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.142 4.142 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.202 0.798 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.253 0.747 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.071 0.929 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.681 22.970 10.250 32.563 hybrid contribution -0.670 -1.257 -0.663 1.571 sum -21.350 21.713 9.586 31.925 Atomic orbital electron populations 1.20577 0.88045 1.03601 1.03099 1.19204 0.98799 0.91528 1.03257 1.25843 0.95196 1.03503 1.09998 1.84499 1.07006 0.99155 1.72626 1.24291 0.97716 0.97361 1.13499 1.19517 0.95265 0.94203 0.84030 1.46024 1.43664 1.38481 1.08799 1.21211 0.77849 0.78455 0.92292 1.90705 1.53913 1.53999 1.47947 1.21677 1.01774 1.00951 0.92304 1.21250 0.97919 0.97450 0.96817 1.21449 0.98629 0.98177 0.95079 1.19072 0.93741 0.93649 0.95512 1.21784 1.23348 1.18933 0.93702 0.91572 1.26114 0.96100 0.96288 1.02089 1.70142 1.29137 1.25276 1.33291 0.85318 0.78034 0.78119 0.79067 1.18083 1.20504 1.20471 1.20317 0.91992 1.00531 1.01324 0.90444 0.90907 0.90518 0.79843 0.91540 0.90119 0.74712 0.86232 0.86383 0.93855 0.93751 0.92028 0.92089 0.99702 0.99660 0.92872 0.83203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.14 71.24 0.72 0.04 16 2 C -0.12 -1.36 5.80 -20.92 -0.12 -1.49 16 3 C -0.21 -2.40 10.98 66.72 0.73 -1.67 16 4 S 0.10 1.44 23.33 -56.49 -1.32 0.12 16 5 C -0.21 -3.29 5.88 24.59 0.14 -3.14 16 6 C 0.19 3.73 6.16 85.64 0.53 4.26 16 7 N -0.72 -13.84 5.55 -466.79 -2.59 -16.43 16 8 C 0.51 13.96 7.83 87.66 0.69 14.65 16 9 O -0.59 -21.87 15.98 -3.03 -0.05 -21.92 16 10 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 11 C -0.10 -3.50 4.50 30.59 0.14 -3.36 16 12 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 13 C 0.02 0.96 4.97 29.85 0.15 1.11 16 14 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 16 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 17 N -0.94 -59.42 13.29 21.45 0.28 -59.13 16 18 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 C -0.11 -1.49 9.85 21.22 0.21 -1.28 16 23 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.07 0.47 8.13 -2.39 -0.02 0.45 16 25 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 26 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.42 5.69 8.46 -92.71 -0.78 4.91 16 30 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -75.03 346.89 2.81 -72.23 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.24 Total: 6.99 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.21 Total: -29.00 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -2.30 Total: -75.56 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.12 kcal Total: -75.03 2.81 -72.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590774159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.342 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds