Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 124.71174 * 2 1 4 4 C 1.44425 * 113.08301 * 180.26974 * 3 2 1 5 5 C 1.47190 * 123.45947 * 179.72701 * 4 3 2 6 6 O 1.21640 * 119.99784 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00165 * 0.02682 * 5 4 3 8 8 C 1.46497 * 119.99757 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46602 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47154 * 299.99657 * 9 8 7 11 11 C 1.53000 * 109.47548 * 60.00253 * 9 8 7 12 12 C 1.50700 * 109.47015 * 180.02562 * 9 8 7 13 13 H 1.08001 * 120.00170 * 359.97438 * 12 9 8 14 14 C 1.37884 * 120.00480 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99459 * 359.97438 * 14 12 9 16 16 Si 1.86791 * 120.00176 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47635 * 59.99694 * 16 14 12 18 18 H 1.48507 * 109.46946 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46992 * 299.99505 * 16 14 12 20 20 C 1.36011 * 113.07836 * 359.50680 * 4 3 2 21 21 C 1.50701 * 124.59501 * 180.20062 * 20 4 3 22 22 S 1.70453 * 110.81620 * 0.47711 * 20 4 3 23 23 H 1.08994 * 109.47037 * 90.00316 * 1 2 3 24 24 H 1.09003 * 109.46455 * 210.00065 * 1 2 3 25 25 H 1.08999 * 109.47053 * 329.99575 * 1 2 3 26 26 H 1.08002 * 123.45547 * 359.97438 * 3 2 1 27 27 H 0.97002 * 119.99392 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.47257 * 299.99802 * 8 7 5 29 29 H 1.08999 * 109.46890 * 60.00858 * 8 7 5 30 30 H 1.09005 * 109.46491 * 60.00759 * 10 9 8 31 31 H 1.09001 * 109.46899 * 180.02562 * 10 9 8 32 32 H 1.08991 * 109.47710 * 300.00400 * 10 9 8 33 33 H 1.08997 * 109.46504 * 59.99571 * 11 9 8 34 34 H 1.09001 * 109.47219 * 180.02562 * 11 9 8 35 35 H 1.08996 * 109.46796 * 299.99925 * 11 9 8 36 36 H 0.96998 * 119.99656 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47114 * 180.34080 * 21 20 4 38 38 H 1.08998 * 109.46634 * 300.34064 * 21 20 4 39 39 H 1.08998 * 109.47062 * 60.33564 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0134 6 8 5.8945 1.5228 -0.0189 7 7 4.3733 3.1419 -0.0137 8 6 5.4108 4.1761 -0.0202 9 6 4.7535 5.5577 -0.0186 10 6 3.8769 5.7069 -1.2637 11 6 3.8895 5.7101 1.2348 12 6 5.8207 6.6217 -0.0259 13 1 6.8635 6.3406 -0.0308 14 6 5.4660 7.9541 -0.0253 15 7 4.1962 8.2964 -0.0189 16 14 6.7889 9.2728 -0.0351 17 1 7.6263 9.1251 -1.2526 18 1 6.1510 10.6139 -0.0334 19 1 7.6411 9.1280 1.1723 20 6 3.9477 -0.5327 -0.0001 21 6 5.3335 -1.1250 -0.0001 22 16 2.5065 -1.4427 -0.0001 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.8615 2.0940 -0.0004 27 1 3.4367 3.3943 -0.0097 28 1 6.0351 4.0701 0.8670 29 1 6.0266 4.0674 -0.9130 30 1 3.1049 4.9374 -1.2587 31 1 3.4090 6.6914 -1.2627 32 1 4.4924 5.5985 -2.1566 33 1 4.5141 5.6037 2.1217 34 1 3.4209 6.6942 1.2357 35 1 3.1176 4.9405 1.2397 36 1 3.9466 9.2338 -0.0181 37 1 5.2636 -2.2128 -0.0006 38 1 5.8696 -0.7950 -0.8899 39 1 5.8694 -0.7957 0.8900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590915895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -43.415636 kcal Electronic energy + Delta-G solvation = -19880.324820 eV Core-core repulsion = 16913.120654 eV Total energy + Delta-G solvation = -2967.204165 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01551 -38.56529 -37.77252 -35.07223 -33.91827 -32.78004 -30.27993 -27.74523 -27.58598 -27.17825 -25.83949 -24.21481 -21.85160 -20.59943 -20.16979 -18.28038 -17.83341 -17.57384 -16.53388 -16.42168 -16.38130 -15.20393 -15.15864 -14.80183 -14.64172 -14.39264 -14.10641 -14.06221 -14.01949 -13.82848 -13.20308 -13.11521 -12.83225 -12.68919 -12.62926 -12.54846 -12.49369 -12.26296 -12.13566 -11.86104 -11.50375 -11.28340 -10.85299 -10.69762 -10.40172 -10.01440 -9.55355 -9.30892 -8.02492 -6.18362 -0.20469 0.51899 0.89827 0.98516 1.44332 1.45234 1.52049 2.37042 2.37255 2.53440 3.21012 3.67723 3.84277 4.12768 4.25110 4.41847 4.49195 4.56279 4.64035 4.65726 4.69509 4.81389 4.89787 4.96790 5.03256 5.08287 5.11745 5.17305 5.18213 5.21328 5.35160 5.41329 5.57206 5.65145 5.66365 6.12728 6.19437 6.42310 6.65953 6.84913 7.28044 7.49129 8.96468 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030455 B = 0.003907 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.173097 B = 7164.136460 C = 7881.630622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.200 4.200 3 C -0.127 4.127 4 C -0.191 4.191 5 C 0.563 3.437 6 O -0.584 6.584 7 N -0.705 5.705 8 C 0.149 3.851 9 C 0.051 3.949 10 C -0.120 4.120 11 C -0.120 4.120 12 C -0.530 4.530 13 H 0.044 0.956 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.946 3.054 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.277 1.277 20 C -0.165 4.165 21 C -0.074 4.074 22 S 0.233 5.767 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.154 0.846 27 H 0.406 0.594 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 -18.549 0.060 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.316 4.316 3 C -0.155 4.155 4 C -0.208 4.208 5 C 0.351 3.649 6 O -0.466 6.466 7 N -0.356 5.356 8 C 0.025 3.975 9 C 0.051 3.949 10 C -0.178 4.178 11 C -0.178 4.178 12 C -0.569 4.569 13 H 0.063 0.937 14 C -0.171 4.171 15 N -0.537 5.537 16 Si 0.772 3.228 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.203 1.203 20 C -0.285 4.285 21 C -0.133 4.133 22 S 0.499 5.501 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.171 0.829 27 H 0.244 0.756 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.474 -20.098 0.057 22.219 hybrid contribution 1.118 2.914 -0.010 3.121 sum -8.355 -17.185 0.046 19.108 Atomic orbital electron populations 1.20485 0.85107 1.04484 1.04019 1.24698 1.01904 0.95689 1.09357 1.21205 0.90088 1.00631 1.03571 1.20158 0.93892 0.92904 1.13844 1.18118 0.88033 0.82794 0.75945 1.90705 1.20400 1.82731 1.52810 1.45988 1.11094 1.05032 1.73456 1.21299 0.89663 0.87575 0.98954 1.18358 0.93855 0.89215 0.93491 1.21667 0.97951 1.01367 0.96773 1.21665 0.97960 1.01377 0.96756 1.21229 0.92530 0.91605 1.51532 0.93743 1.25449 0.97077 0.99938 0.94591 1.69897 1.16055 1.17243 1.50510 0.85808 0.79802 0.78719 0.78424 1.20284 1.20706 1.20272 1.24754 1.03498 0.96936 1.03360 1.20346 0.89280 1.00364 1.03281 1.82589 0.90831 1.07024 1.69619 0.89451 0.89665 0.89598 0.82854 0.75633 0.94292 0.94289 0.94703 0.91678 0.96348 0.96342 0.91674 0.94703 0.92973 0.89053 0.91195 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.35 71.24 0.74 -0.24 16 2 C -0.20 -3.78 6.44 24.51 0.16 -3.62 16 3 C -0.13 -3.07 9.75 22.67 0.22 -2.84 16 4 C -0.19 -5.77 5.98 -19.87 -0.12 -5.89 16 5 C 0.56 21.35 7.79 86.60 0.67 22.02 16 6 O -0.58 -25.60 14.64 -4.16 -0.06 -25.66 16 7 N -0.70 -26.52 4.94 -466.60 -2.30 -28.83 16 8 C 0.15 6.63 4.50 86.38 0.39 7.02 16 9 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 10 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 11 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 12 C -0.53 -28.48 8.01 25.60 0.21 -28.27 16 13 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 14 C 0.03 1.56 5.15 84.66 0.44 1.99 16 15 N -0.90 -48.10 9.35 21.45 0.20 -47.90 16 16 Si 0.95 42.88 29.54 68.60 2.03 44.90 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C -0.17 -4.29 6.34 25.17 0.16 -4.13 16 21 C -0.07 -1.84 8.77 71.24 0.62 -1.22 16 22 S 0.23 4.17 22.93 -56.49 -1.30 2.88 16 23 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.15 3.35 7.10 -2.91 -0.02 3.33 16 27 H 0.41 13.52 4.71 -92.71 -0.44 13.09 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.33 6.86 -2.38 -0.02 1.32 16 31 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 35 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 36 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 37 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 38 H 0.07 1.95 7.76 -2.39 -0.02 1.93 16 39 H 0.07 1.95 7.80 -2.39 -0.02 1.93 16 Total: -1.00 -62.40 326.85 3.81 -58.59 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.62 Total: 18.50 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.62 Total: -22.48 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.10 Total: -76.73 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.30 Total: 2.88 kcal Total: -62.40 3.81 -58.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590915895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.177 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds