Wall clock time and date at job start Tue Mar 31 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 C 1.50707 * 109.47468 * 239.99967 * 2 1 3 5 5 H 1.08002 * 119.99391 * 240.00419 * 4 2 1 6 6 C 1.37866 * 119.99953 * 59.99385 * 4 2 1 7 7 N 1.31518 * 120.00075 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47267 * 120.00433 * 8 6 4 11 11 H 1.48510 * 109.47236 * 240.00149 * 8 6 4 12 12 C 1.53000 * 109.47298 * 119.99469 * 2 1 3 13 13 N 1.46496 * 109.47591 * 300.00453 * 12 2 1 14 14 C 1.34772 * 120.00256 * 179.97438 * 13 12 2 15 15 O 1.21580 * 120.00363 * 359.97438 * 14 13 12 16 16 C 1.47606 * 119.99966 * 179.97438 * 14 13 12 17 17 C 1.39725 * 120.08013 * 359.97438 * 16 14 13 18 18 C 1.37736 * 119.95040 * 179.74391 * 17 16 14 19 19 C 1.38924 * 120.11393 * 0.53211 * 18 17 16 20 20 O 1.35764 * 119.91772 * 179.76427 * 19 18 17 21 21 C 1.39164 * 120.16503 * 359.48673 * 19 18 17 22 22 F 1.35099 * 119.97663 * 180.25560 * 21 19 18 23 23 C 1.37892 * 120.04584 * 0.23347 * 21 19 18 24 24 H 1.09002 * 109.47181 * 300.00237 * 1 2 3 25 25 H 1.09000 * 109.46873 * 60.00519 * 1 2 3 26 26 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47381 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46818 * 299.99515 * 3 2 1 29 29 H 1.08992 * 109.47273 * 59.99824 * 3 2 1 30 30 H 0.97001 * 119.99540 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47308 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46876 * 60.00144 * 12 2 1 33 33 H 0.97007 * 119.99650 * 359.97438 * 13 12 2 34 34 H 1.07998 * 120.02223 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.94251 * 180.27426 * 18 17 16 36 36 H 0.96696 * 114.00165 * 269.72453 * 20 19 18 37 37 H 1.08008 * 120.05976 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1457 -2.2878 -3.6037 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5752 -1.4802 3.7812 16 6 1.3853 0.2049 4.8747 17 6 0.5831 1.3420 4.7484 18 6 0.1215 1.9864 5.8748 19 6 0.4612 1.5143 7.1364 20 8 0.0079 2.1555 8.2440 21 6 1.2602 0.3825 7.2678 22 9 1.5839 -0.0763 8.4966 23 6 1.7213 -0.2713 6.1447 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.7094 1.1615 -3.4844 31 1 3.1301 -0.7215 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9942 0.7583 2.3564 34 1 0.3215 1.7125 3.7683 35 1 -0.5022 2.8627 5.7770 36 1 0.5982 2.8507 8.5653 37 1 2.3417 -1.1495 6.2464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:36 Heat of formation + Delta-G solvation = -105.175490 kcal Electronic energy + Delta-G solvation = -21550.009975 eV Core-core repulsion = 18013.914525 eV Total energy + Delta-G solvation = -3536.095450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.10906 -40.26155 -38.96871 -36.92762 -36.30301 -33.48061 -31.22779 -30.99256 -29.91550 -25.84198 -25.79227 -25.16683 -23.49281 -23.06263 -20.53981 -19.13768 -18.81031 -18.11802 -16.93064 -16.33481 -16.20942 -15.87831 -15.32898 -15.06400 -14.84676 -14.68128 -14.24097 -13.94314 -13.56628 -13.01887 -13.00668 -12.68101 -12.44594 -12.24156 -12.08858 -11.44579 -11.26148 -10.94712 -10.92440 -10.70176 -10.45413 -10.25267 -9.80460 -9.70407 -9.36138 -9.29644 -8.96259 -8.84201 -8.52994 -8.38514 -6.06810 -4.16882 0.40058 0.84842 2.67457 3.24652 3.33388 3.36394 3.42849 3.57893 3.68482 4.03767 4.36482 4.45284 4.74928 4.78139 4.94754 5.20396 5.33809 5.63716 5.65441 5.81324 5.94602 6.16101 6.25083 6.32720 6.43956 6.68332 6.74541 6.85689 6.90226 6.95234 7.17454 7.28602 7.49323 7.64791 7.89751 7.95086 8.08233 8.32270 8.51219 8.83891 9.49410 10.94702 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.003415 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.768057 B = 8197.498258 C = 8699.651217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.546 3.454 15 O -0.543 6.543 16 C -0.104 4.104 17 C -0.080 4.080 18 C -0.122 4.122 19 C 0.091 3.909 20 O -0.488 6.488 21 C 0.066 3.934 22 F -0.131 7.131 23 C -0.084 4.084 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.398 0.602 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.395 0.605 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 5.600 15.994 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.357 5.357 14 C 0.332 3.668 15 O -0.423 6.423 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.141 4.141 19 C 0.045 3.955 20 O -0.298 6.298 21 C 0.046 3.954 22 F -0.109 7.109 23 C -0.104 4.104 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.235 0.765 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.251 0.749 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.930 4.602 15.872 16.638 hybrid contribution 0.446 0.221 -0.578 0.763 sum -1.484 4.823 15.293 16.104 Atomic orbital electron populations 1.21842 0.97685 0.99305 1.00083 1.18382 0.92859 0.92808 0.90539 1.21840 0.98697 0.98287 1.00078 1.21011 1.31492 1.12143 0.89807 0.92308 1.24875 0.94818 0.94917 0.98885 1.69808 1.36689 1.22747 1.23177 0.86510 0.78654 0.79762 0.82929 1.19737 1.21049 1.21047 1.21815 0.98395 0.95946 0.83039 1.46262 1.52038 1.31570 1.05828 1.18031 0.81063 0.84374 0.83335 1.90770 1.38449 1.26200 1.86830 1.20032 1.00165 0.96800 0.93759 1.21373 0.95293 0.93828 0.99431 1.21266 1.01012 1.01419 0.90370 1.18636 0.96296 0.93090 0.87442 1.84814 1.48978 1.53680 1.42345 1.17929 1.00190 0.96705 0.80599 1.91513 1.91134 1.88194 1.40106 1.21191 0.99150 1.00308 0.89730 0.97592 0.89491 0.95319 0.95327 0.89494 0.97597 0.93026 0.92330 0.92333 0.76539 0.84100 0.83623 0.74850 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.05 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.90 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.98 9.35 55.43 0.52 -22.46 16 8 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.98 4.91 -61.33 -0.30 -12.28 16 14 C 0.55 9.26 7.76 -12.44 -0.10 9.16 16 15 O -0.54 -11.06 16.34 5.30 0.09 -10.98 16 16 C -0.10 -1.39 5.87 -104.96 -0.62 -2.01 16 17 C -0.08 -0.85 9.53 -39.21 -0.37 -1.23 16 18 C -0.12 -1.12 9.97 -39.51 -0.39 -1.52 16 19 C 0.09 0.94 6.72 -38.98 -0.26 0.68 16 20 O -0.49 -4.31 13.35 -19.00 -0.25 -4.56 16 21 C 0.07 0.78 7.30 -39.36 -0.29 0.49 16 22 F -0.13 -1.62 17.10 2.25 0.04 -1.58 16 23 C -0.08 -1.08 9.56 -39.15 -0.37 -1.45 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.40 5.92 4.18 -40.82 -0.17 5.75 16 34 H 0.14 1.29 6.39 -52.49 -0.34 0.95 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.39 1.52 9.06 45.56 0.41 1.93 16 37 H 0.15 2.00 7.64 -52.48 -0.40 1.60 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -29.44 312.77 -5.98 -35.41 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.49 Total: 5.17 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.27 Total: -8.73 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.22 Total: -34.74 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.17 Total: -15.54 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.44 -5.98 -35.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.761 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds