Wall clock time and date at job start Tue Mar 31 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 C 1.50707 * 109.47468 * 239.99967 * 2 1 3 5 5 H 1.08002 * 119.99391 * 240.00419 * 4 2 1 6 6 C 1.37866 * 119.99953 * 59.99385 * 4 2 1 7 7 N 1.31518 * 120.00075 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47267 * 120.00433 * 8 6 4 11 11 H 1.48510 * 109.47236 * 240.00149 * 8 6 4 12 12 C 1.53000 * 109.47298 * 119.99469 * 2 1 3 13 13 N 1.46496 * 109.47591 * 300.00453 * 12 2 1 14 14 C 1.34772 * 120.00256 * 179.97438 * 13 12 2 15 15 O 1.21580 * 120.00363 * 359.97438 * 14 13 12 16 16 C 1.47606 * 119.99966 * 179.97438 * 14 13 12 17 17 C 1.39725 * 120.08013 * 359.97438 * 16 14 13 18 18 C 1.37736 * 119.95040 * 179.74391 * 17 16 14 19 19 C 1.38924 * 120.11393 * 0.53211 * 18 17 16 20 20 O 1.35764 * 119.91772 * 179.76427 * 19 18 17 21 21 C 1.39164 * 120.16503 * 359.48673 * 19 18 17 22 22 F 1.35099 * 119.97663 * 180.25560 * 21 19 18 23 23 C 1.37892 * 120.04584 * 0.23347 * 21 19 18 24 24 H 1.09002 * 109.47181 * 300.00237 * 1 2 3 25 25 H 1.09000 * 109.46873 * 60.00519 * 1 2 3 26 26 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47381 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46818 * 299.99515 * 3 2 1 29 29 H 1.08992 * 109.47273 * 59.99824 * 3 2 1 30 30 H 0.97001 * 119.99540 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47308 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46876 * 60.00144 * 12 2 1 33 33 H 0.97007 * 119.99650 * 359.97438 * 13 12 2 34 34 H 1.07998 * 120.02223 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.94251 * 180.27426 * 18 17 16 36 36 H 0.96696 * 114.00165 * 269.72453 * 20 19 18 37 37 H 1.08008 * 120.05976 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1457 -2.2878 -3.6037 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5752 -1.4802 3.7812 16 6 1.3853 0.2049 4.8747 17 6 0.5831 1.3420 4.7484 18 6 0.1215 1.9864 5.8748 19 6 0.4612 1.5143 7.1364 20 8 0.0079 2.1555 8.2440 21 6 1.2602 0.3825 7.2678 22 9 1.5839 -0.0763 8.4966 23 6 1.7213 -0.2713 6.1447 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.7094 1.1615 -3.4844 31 1 3.1301 -0.7215 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9942 0.7583 2.3564 34 1 0.3215 1.7125 3.7683 35 1 -0.5022 2.8627 5.7770 36 1 0.5982 2.8507 8.5653 37 1 2.3417 -1.1495 6.2464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:36 Heat of formation + Delta-G solvation = -124.706737 kcal Electronic energy + Delta-G solvation = -21550.856913 eV Core-core repulsion = 18013.914525 eV Total energy + Delta-G solvation = -3536.942388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.02270 -41.37987 -40.03107 -38.23719 -37.53667 -35.11336 -32.90280 -31.88233 -31.00192 -27.53892 -27.49501 -26.89575 -24.62724 -23.93147 -21.80351 -20.66435 -19.78736 -19.29556 -17.89900 -17.79016 -17.28807 -17.11643 -16.58373 -16.50198 -16.29166 -16.03117 -15.04480 -15.00975 -14.84033 -14.74042 -14.60467 -13.99064 -13.60687 -13.32807 -13.23246 -13.07378 -13.00137 -12.67507 -12.56788 -12.23628 -12.12766 -11.71999 -11.47269 -11.33936 -11.02796 -10.68079 -10.39211 -10.18674 -10.05197 -9.73403 -8.01553 -6.16652 -0.51221 -0.00159 1.42116 1.47007 1.55712 1.62086 2.13323 2.48426 2.54706 2.83125 3.22506 3.23275 3.60926 3.65760 3.92931 4.06114 4.38684 4.51548 4.54300 4.71360 4.77806 4.89082 4.97586 5.01711 5.07356 5.07629 5.13599 5.21543 5.33071 5.52271 5.56881 5.69454 5.69573 6.17971 6.22881 6.44967 6.56805 6.65745 6.87301 7.18054 7.51155 8.97384 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.003415 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.768057 B = 8197.498258 C = 8699.651217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.146 3.854 13 N -0.699 5.699 14 C 0.548 3.452 15 O -0.586 6.586 16 C -0.124 4.124 17 C -0.067 4.067 18 C -0.110 4.110 19 C 0.110 3.890 20 O -0.494 6.494 21 C 0.050 3.950 22 F -0.138 7.138 23 C -0.091 4.091 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.260 0.740 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.411 0.589 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.419 0.581 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 7.534 17.129 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.022 3.978 13 N -0.350 5.350 14 C 0.336 3.664 15 O -0.468 6.468 16 C -0.127 4.127 17 C -0.086 4.086 18 C -0.128 4.128 19 C 0.064 3.936 20 O -0.308 6.308 21 C 0.031 3.969 22 F -0.117 7.117 23 C -0.111 4.111 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.250 0.750 34 H 0.178 0.822 35 H 0.199 0.801 36 H 0.280 0.720 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.153 6.578 17.026 18.523 hybrid contribution 0.800 -0.331 -0.818 1.191 sum -2.354 6.247 16.208 17.529 Atomic orbital electron populations 1.21688 0.96933 0.98774 1.00604 1.18380 0.93400 0.93179 0.90085 1.21683 0.98017 0.97648 1.00617 1.21299 1.31655 1.12153 0.91592 0.93803 1.25405 0.95159 0.95594 1.00830 1.69902 1.36969 1.23196 1.23517 0.85743 0.78107 0.78745 0.80404 1.20144 1.20812 1.20751 1.21365 0.97323 0.95240 0.83866 1.46009 1.52262 1.31784 1.04948 1.18534 0.79991 0.83768 0.84075 1.90745 1.40388 1.28233 1.87444 1.19682 1.02659 0.98474 0.91910 1.21575 0.93737 0.92280 1.01013 1.21570 1.00361 1.01843 0.89030 1.18730 0.94398 0.92082 0.88435 1.84756 1.49714 1.54484 1.41854 1.18029 1.01309 0.97637 0.79960 1.91491 1.91367 1.88468 1.40372 1.21092 0.99429 1.00261 0.90272 0.94105 0.91792 0.96350 0.96273 0.91812 0.94058 0.93035 0.93923 0.94035 0.75046 0.82157 0.80094 0.71970 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.11 8.08 71.98 0.58 -4.53 16 4 C -0.53 -27.29 8.01 25.60 0.21 -27.09 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.55 5.15 84.65 0.44 1.98 16 7 N -0.90 -46.45 9.35 21.44 0.20 -46.25 16 8 Si 0.94 41.90 29.54 68.60 2.03 43.92 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.15 5.98 4.50 86.38 0.39 6.37 16 13 N -0.70 -22.87 4.91 -466.20 -2.29 -25.15 16 14 C 0.55 18.38 7.76 86.72 0.67 19.05 16 15 O -0.59 -24.51 16.34 -3.97 -0.06 -24.58 16 16 C -0.12 -3.14 5.87 -20.08 -0.12 -3.26 16 17 C -0.07 -1.19 9.53 22.51 0.21 -0.97 16 18 C -0.11 -1.52 9.97 22.32 0.22 -1.30 16 19 C 0.11 1.88 6.72 22.66 0.15 2.03 16 20 O -0.49 -6.81 13.35 -90.91 -1.21 -8.03 16 21 C 0.05 1.12 7.30 22.41 0.16 1.28 16 22 F -0.14 -3.30 17.10 44.97 0.77 -2.53 16 23 C -0.09 -2.29 9.56 22.55 0.22 -2.07 16 24 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 25 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 30 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 31 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.41 11.05 4.18 -92.70 -0.39 10.66 16 34 H 0.16 2.18 6.39 -2.91 -0.02 2.16 16 35 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.42 1.50 9.06 -74.06 -0.67 0.83 16 37 H 0.14 3.80 7.64 -2.91 -0.02 3.78 16 Total: -1.00 -64.46 312.77 3.18 -61.27 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.07 Total: 12.24 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 3.69 Total: -10.89 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.09 Total: -71.41 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.28 Total: -32.60 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.77 Total: -2.53 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -64.46 3.18 -61.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.432 kcal (2) G-P(sol) polarization free energy of solvation -64.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds