Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42901 * 110.27464 * 57.91490 * 9 7 2 11 11 C 1.54595 * 110.31131 * 295.71695 * 9 7 2 12 12 C 1.54942 * 102.91828 * 219.12946 * 11 9 7 13 13 N 1.48530 * 103.23043 * 37.41654 * 12 11 9 14 14 C 1.46896 * 110.99709 * 200.27905 * 13 12 11 15 15 C 1.52993 * 109.47157 * 287.39135 * 14 13 12 16 16 C 1.53006 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47057 * 180.02562 * 16 15 14 18 18 C 1.38426 * 122.53861 * 269.73561 * 17 16 15 19 19 C 1.33388 * 114.92255 * 179.76311 * 18 17 16 20 20 S 1.75888 * 109.59140 * 0.47723 * 19 18 17 21 21 C 1.33387 * 122.54313 * 90.02417 * 17 16 15 22 22 C 1.47906 * 105.81807 * 320.78782 * 13 12 11 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 0.96702 * 113.99960 * 300.69820 * 10 9 7 25 25 H 1.08993 * 110.72523 * 337.48628 * 11 9 7 26 26 H 1.09004 * 110.72137 * 100.77177 * 11 9 7 27 27 H 1.09003 * 110.66425 * 278.97335 * 12 11 9 28 28 H 1.09003 * 110.80581 * 155.92323 * 12 11 9 29 29 H 1.08998 * 109.47321 * 47.39763 * 14 13 12 30 30 H 1.09001 * 109.47137 * 167.39118 * 14 13 12 31 31 H 1.08998 * 109.47519 * 300.00507 * 15 14 13 32 32 H 1.09002 * 109.47453 * 60.00665 * 15 14 13 33 33 H 1.08998 * 109.47131 * 300.00554 * 16 15 14 34 34 H 1.09003 * 109.46922 * 60.00560 * 16 15 14 35 35 H 1.08008 * 122.53910 * 0.02562 * 18 17 16 36 36 H 1.08004 * 125.20656 * 180.21008 * 19 18 17 37 37 H 1.08004 * 125.20040 * 0.02810 * 21 17 16 38 38 H 1.08999 * 109.92231 * 265.97917 * 22 13 12 39 39 H 1.09002 * 109.91823 * 144.68135 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 0.3820 -2.5742 -1.1267 11 6 0.4434 -2.6467 1.3152 12 6 0.6096 -4.1487 1.6573 13 7 2.0112 -4.4352 1.2579 14 6 2.2162 -5.8753 1.0530 15 6 2.2237 -6.5872 2.4072 16 6 2.4378 -8.0870 2.1937 17 6 2.4446 -8.7883 3.5276 18 6 3.6030 -8.9854 4.2593 19 6 3.4332 -9.6188 5.4209 20 16 1.7330 -10.0166 5.6327 21 6 1.3356 -9.2711 4.0900 22 6 2.2345 -3.6842 0.0034 23 1 -0.4850 0.8401 0.0004 24 1 -0.2737 -1.8646 -1.1668 25 1 0.8671 -2.0227 2.1019 26 1 -0.6061 -2.4023 1.1508 27 1 -0.0871 -4.7546 1.0780 28 1 0.4709 -4.3203 2.7248 29 1 1.4093 -6.2732 0.4377 30 1 3.1700 -6.0387 0.5513 31 1 3.0306 -6.1892 3.0225 32 1 1.2698 -6.4238 2.9088 33 1 1.6312 -8.4853 1.5783 34 1 3.3919 -8.2501 1.6923 35 1 4.5704 -8.6478 3.9177 36 1 4.2200 -9.8555 6.1219 37 1 0.3452 -9.2135 3.6631 38 1 2.0391 -4.3276 -0.8544 39 1 3.2598 -3.3157 -0.0313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -23.693721 kcal Electronic energy + Delta-G solvation = -19516.340945 eV Core-core repulsion = 16549.991986 eV Total energy + Delta-G solvation = -2966.348959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.78695 -38.18452 -35.24746 -33.11444 -32.03946 -30.19697 -28.67968 -27.97988 -25.88344 -24.16023 -22.86783 -21.48838 -20.02162 -19.33489 -18.80297 -17.69568 -17.05507 -15.72653 -15.01225 -14.98181 -14.76631 -14.36977 -13.87921 -13.55468 -13.22123 -13.16582 -12.70388 -12.58421 -12.34185 -12.02606 -11.72067 -11.59176 -11.47766 -11.22444 -11.00845 -10.89551 -10.68028 -10.58452 -10.43672 -10.27019 -10.21892 -9.88321 -9.12923 -8.93268 -8.55084 -8.48172 -8.07143 -7.73619 -6.16731 -4.22322 0.87548 1.53071 1.84882 2.58252 3.26206 3.32991 3.37201 4.34899 4.55879 4.75271 4.90640 5.08720 5.13423 5.22709 5.38600 5.46803 5.57142 5.65401 5.78281 5.81547 5.88793 5.95230 6.06515 6.14027 6.23990 6.28537 6.31661 6.41656 6.47534 6.53170 6.57652 6.96658 7.10432 7.33621 7.55224 7.70864 7.77781 7.89472 8.20588 8.79112 9.44430 9.56458 10.91145 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036168 B = 0.002940 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.989391 B = 9520.935882 C = 9612.711113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.595 6.595 11 C -0.119 4.119 12 C 0.032 3.968 13 N -0.515 5.515 14 C 0.047 3.953 15 C -0.104 4.104 16 C -0.061 4.061 17 C -0.093 4.093 18 C -0.127 4.127 19 C -0.213 4.213 20 S 0.077 5.923 21 C -0.211 4.211 22 C 0.054 3.946 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.034 0.966 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -17.569 8.339 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.095 4.095 13 N -0.239 5.239 14 C -0.082 4.082 15 C -0.143 4.143 16 C -0.102 4.102 17 C -0.105 4.105 18 C -0.158 4.158 19 C -0.348 4.348 20 S 0.341 5.659 21 C -0.347 4.347 22 C -0.073 4.073 23 H 0.076 0.924 24 H 0.234 0.766 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.053 0.947 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.886 -18.568 9.767 21.177 hybrid contribution 0.313 1.846 -1.463 2.376 sum 3.199 -16.721 8.304 18.942 Atomic orbital electron populations 1.69619 1.05955 1.27344 1.51195 1.25020 0.95002 0.99459 0.93950 0.86458 0.79878 0.82712 0.78148 1.20588 1.21168 1.19759 1.21708 0.93529 0.90645 1.50615 0.91992 1.19358 0.86229 0.91586 0.82573 1.86084 1.50707 1.55176 1.48560 1.22985 1.00683 0.91656 1.00436 1.23302 0.88407 0.98822 0.98998 1.64755 1.23505 1.05714 1.29956 1.22253 1.00468 0.89417 0.96059 1.21490 1.02704 0.92279 0.97785 1.20354 1.02753 0.94964 0.92091 1.19016 0.92122 1.00603 0.98777 1.20163 0.99685 1.01263 0.94674 1.25573 0.99112 1.07820 1.02341 1.84222 1.02673 1.58556 1.20495 1.25465 1.02707 1.07427 0.99069 1.22845 1.00459 0.95024 0.88980 0.92394 0.76558 0.91445 0.91825 0.95011 0.91848 0.95199 0.91443 0.91094 0.91999 0.91163 0.90829 0.84148 0.82013 0.81978 0.94717 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 10.89 55.43 0.60 -23.75 16 2 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.37 8.10 -34.44 -0.28 -14.65 16 8 H 0.06 1.69 7.34 -52.49 -0.39 1.30 16 9 C 0.24 6.14 0.99 -90.41 -0.09 6.05 16 10 O -0.60 -15.82 12.92 -35.23 -0.46 -16.27 16 11 C -0.12 -2.81 5.50 -24.87 -0.14 -2.94 16 12 C 0.03 0.64 5.91 -1.90 -0.01 0.63 16 13 N -0.52 -10.08 5.24 -230.45 -1.21 -11.29 16 14 C 0.05 0.73 4.70 -3.83 -0.02 0.71 16 15 C -0.10 -1.37 5.29 -26.73 -0.14 -1.51 16 16 C -0.06 -0.65 5.47 -27.88 -0.15 -0.81 16 17 C -0.09 -1.00 5.06 -106.25 -0.54 -1.54 16 18 C -0.13 -1.28 9.98 -41.21 -0.41 -1.69 16 19 C -0.21 -1.96 11.23 29.04 0.33 -1.63 16 20 S 0.08 0.72 23.34 -107.50 -2.51 -1.79 16 21 C -0.21 -2.18 10.98 29.04 0.32 -1.86 16 22 C 0.05 1.21 6.13 -2.75 -0.02 1.19 16 23 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.38 10.31 7.07 45.56 0.32 10.64 16 25 H 0.07 1.69 7.86 -51.93 -0.41 1.28 16 26 H 0.06 1.55 8.06 -51.93 -0.42 1.13 16 27 H 0.03 0.62 7.81 -51.93 -0.41 0.22 16 28 H 0.06 1.15 7.80 -51.93 -0.40 0.75 16 29 H 0.03 0.47 7.83 -51.93 -0.41 0.06 16 30 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.85 7.37 -51.93 -0.38 0.47 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.03 0.76 7.59 -51.93 -0.39 0.37 16 39 H 0.08 1.74 7.39 -51.93 -0.38 1.36 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -28.15 328.93 -10.23 -38.38 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.36 Total: 10.15 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.24 Total: -16.33 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.60 Total: -35.03 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.46 Total: -16.27 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.15 -10.23 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.684 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds