Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42901 * 110.27464 * 57.91490 * 9 7 2 11 11 C 1.54595 * 110.31131 * 295.71695 * 9 7 2 12 12 C 1.54942 * 102.91828 * 219.12946 * 11 9 7 13 13 N 1.48530 * 103.23043 * 37.41654 * 12 11 9 14 14 C 1.46896 * 110.99709 * 200.27905 * 13 12 11 15 15 C 1.52993 * 109.47157 * 287.39135 * 14 13 12 16 16 C 1.53006 * 109.47225 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47057 * 180.02562 * 16 15 14 18 18 C 1.38426 * 122.53861 * 269.73561 * 17 16 15 19 19 C 1.33388 * 114.92255 * 179.76311 * 18 17 16 20 20 S 1.75888 * 109.59140 * 0.47723 * 19 18 17 21 21 C 1.33387 * 122.54313 * 90.02417 * 17 16 15 22 22 C 1.47906 * 105.81807 * 320.78782 * 13 12 11 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 0.96702 * 113.99960 * 300.69820 * 10 9 7 25 25 H 1.08993 * 110.72523 * 337.48628 * 11 9 7 26 26 H 1.09004 * 110.72137 * 100.77177 * 11 9 7 27 27 H 1.09003 * 110.66425 * 278.97335 * 12 11 9 28 28 H 1.09003 * 110.80581 * 155.92323 * 12 11 9 29 29 H 1.08998 * 109.47321 * 47.39763 * 14 13 12 30 30 H 1.09001 * 109.47137 * 167.39118 * 14 13 12 31 31 H 1.08998 * 109.47519 * 300.00507 * 15 14 13 32 32 H 1.09002 * 109.47453 * 60.00665 * 15 14 13 33 33 H 1.08998 * 109.47131 * 300.00554 * 16 15 14 34 34 H 1.09003 * 109.46922 * 60.00560 * 16 15 14 35 35 H 1.08008 * 122.53910 * 0.02562 * 18 17 16 36 36 H 1.08004 * 125.20656 * 180.21008 * 19 18 17 37 37 H 1.08004 * 125.20040 * 0.02810 * 21 17 16 38 38 H 1.08999 * 109.92231 * 265.97917 * 22 13 12 39 39 H 1.09002 * 109.91823 * 144.68135 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 0.3820 -2.5742 -1.1267 11 6 0.4434 -2.6467 1.3152 12 6 0.6096 -4.1487 1.6573 13 7 2.0112 -4.4352 1.2579 14 6 2.2162 -5.8753 1.0530 15 6 2.2237 -6.5872 2.4072 16 6 2.4378 -8.0870 2.1937 17 6 2.4446 -8.7883 3.5276 18 6 3.6030 -8.9854 4.2593 19 6 3.4332 -9.6188 5.4209 20 16 1.7330 -10.0166 5.6327 21 6 1.3356 -9.2711 4.0900 22 6 2.2345 -3.6842 0.0034 23 1 -0.4850 0.8401 0.0004 24 1 -0.2737 -1.8646 -1.1668 25 1 0.8671 -2.0227 2.1019 26 1 -0.6061 -2.4023 1.1508 27 1 -0.0871 -4.7546 1.0780 28 1 0.4709 -4.3203 2.7248 29 1 1.4093 -6.2732 0.4377 30 1 3.1700 -6.0387 0.5513 31 1 3.0306 -6.1892 3.0225 32 1 1.2698 -6.4238 2.9088 33 1 1.6312 -8.4853 1.5783 34 1 3.3919 -8.2501 1.6923 35 1 4.5704 -8.6478 3.9177 36 1 4.2200 -9.8555 6.1219 37 1 0.3452 -9.2135 3.6631 38 1 2.0391 -4.3276 -0.8544 39 1 3.2598 -3.3157 -0.0313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -41.367558 kcal Electronic energy + Delta-G solvation = -19517.107340 eV Core-core repulsion = 16549.991986 eV Total energy + Delta-G solvation = -2967.115354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20405 -39.26914 -36.93558 -34.38177 -34.12354 -31.47969 -29.97569 -29.66387 -27.26846 -25.78838 -23.90456 -22.69504 -21.50822 -21.22074 -19.55866 -19.10292 -18.43906 -17.03601 -16.88816 -16.26957 -16.17118 -15.85685 -15.63564 -14.74726 -14.40695 -14.15145 -13.92960 -13.87315 -13.71513 -13.46097 -13.23756 -13.01443 -12.95189 -12.62924 -12.53369 -12.43095 -12.27307 -12.05688 -11.98680 -11.85879 -11.51639 -11.43093 -11.05143 -10.59266 -10.09983 -9.66613 -9.31457 -9.22743 -8.20976 -6.34332 0.14335 0.82009 1.12556 1.41286 1.42866 1.52961 1.82098 2.40078 2.99563 3.16320 3.87138 3.96652 4.06403 4.13987 4.26960 4.30114 4.40659 4.50296 4.52720 4.57051 4.63696 4.73193 4.75210 4.81863 4.86074 4.97737 5.07767 5.13427 5.23921 5.26679 5.41075 5.42966 5.58190 5.60169 5.66527 5.77903 6.00811 6.16713 6.29261 6.69970 7.35403 7.45476 8.85261 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036168 B = 0.002940 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.989391 B = 9520.935882 C = 9612.711113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.225 3.775 10 O -0.603 6.603 11 C -0.112 4.112 12 C 0.044 3.956 13 N -0.519 5.519 14 C 0.046 3.954 15 C -0.092 4.092 16 C -0.053 4.053 17 C -0.105 4.105 18 C -0.143 4.143 19 C -0.214 4.214 20 S 0.083 5.917 21 C -0.224 4.224 22 C 0.062 3.938 23 H 0.269 0.731 24 H 0.377 0.623 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.035 0.965 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 -18.507 9.071 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.185 3.815 10 O -0.412 6.412 11 C -0.151 4.151 12 C -0.083 4.083 13 N -0.244 5.244 14 C -0.082 4.082 15 C -0.131 4.131 16 C -0.094 4.094 17 C -0.118 4.118 18 C -0.173 4.173 19 C -0.349 4.349 20 S 0.347 5.653 21 C -0.360 4.360 22 C -0.066 4.066 23 H 0.078 0.922 24 H 0.228 0.772 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.188 0.812 38 H 0.053 0.947 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.620 -19.528 10.504 22.467 hybrid contribution 0.072 2.108 -1.673 2.692 sum 3.692 -17.420 8.831 19.876 Atomic orbital electron populations 1.69700 1.06833 1.28119 1.50969 1.25721 0.95880 1.02350 0.93475 0.85511 0.78698 0.78969 0.78154 1.20221 1.20557 1.19576 1.21967 0.93438 0.92143 1.51629 0.92765 1.19637 0.86746 0.92333 0.82754 1.86076 1.50767 1.54878 1.49472 1.22776 0.99150 0.94126 0.99078 1.23191 0.88823 0.95973 1.00327 1.64755 1.23081 1.08121 1.28416 1.22374 1.01088 0.86920 0.97798 1.21360 1.02088 0.93703 0.95916 1.20259 1.03587 0.93030 0.92481 1.19112 0.92600 1.01137 0.98930 1.20358 1.00058 1.01850 0.95069 1.25902 0.99494 1.07022 1.02458 1.84204 1.02998 1.58201 1.19898 1.25693 1.03154 1.07514 0.99608 1.22676 0.99252 0.94339 0.90347 0.92175 0.77212 0.93466 0.93367 0.94532 0.89750 0.94965 0.90330 0.91735 0.92657 0.90551 0.89785 0.83075 0.79911 0.81197 0.94711 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 10.89 21.45 0.23 -49.66 16 2 C 0.03 1.37 5.27 84.66 0.45 1.82 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -30.56 8.10 25.60 0.21 -30.35 16 8 H 0.05 2.99 7.34 -2.92 -0.02 2.97 16 9 C 0.22 11.51 0.99 -10.66 -0.01 11.50 16 10 O -0.60 -32.45 12.92 -148.98 -1.93 -34.37 16 11 C -0.11 -5.36 5.50 31.80 0.17 -5.18 16 12 C 0.04 1.72 5.91 86.65 0.51 2.24 16 13 N -0.52 -19.73 5.24 -883.00 -4.63 -24.36 16 14 C 0.05 1.35 4.70 86.30 0.41 1.76 16 15 C -0.09 -2.24 5.29 30.59 0.16 -2.08 16 16 C -0.05 -1.02 5.47 29.85 0.16 -0.86 16 17 C -0.11 -2.07 5.06 -20.92 -0.11 -2.18 16 18 C -0.14 -2.59 9.98 21.22 0.21 -2.38 16 19 C -0.21 -3.48 11.23 66.72 0.75 -2.73 16 20 S 0.08 1.42 23.34 -56.49 -1.32 0.10 16 21 C -0.22 -4.26 10.98 66.72 0.73 -3.52 16 22 C 0.06 2.74 6.13 86.45 0.53 3.27 16 23 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 24 H 0.38 20.77 7.07 -74.06 -0.52 20.25 16 25 H 0.05 2.39 7.86 -2.39 -0.02 2.37 16 26 H 0.05 2.39 8.06 -2.39 -0.02 2.37 16 27 H 0.04 1.38 7.81 -2.39 -0.02 1.37 16 28 H 0.08 2.92 7.80 -2.39 -0.02 2.90 16 29 H 0.03 0.95 7.83 -2.39 -0.02 0.93 16 30 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.41 7.37 -2.39 -0.02 1.40 16 33 H 0.08 1.37 8.12 -2.39 -0.02 1.36 16 34 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.03 1.51 7.59 -2.39 -0.02 1.49 16 39 H 0.07 3.24 7.39 -2.39 -0.02 3.23 16 Total: -1.00 -59.19 328.93 -0.93 -60.12 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.51 Total: 31.86 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.18 Total: -28.71 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -4.40 Total: -74.02 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.93 Total: -34.37 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.32 Total: 0.10 kcal Total: -59.19 -0.93 -60.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.749 kcal (2) G-P(sol) polarization free energy of solvation -59.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds