Wall clock time and date at job start Tue Mar 31 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33391 * 125.20030 * 2 1 4 4 C 1.38428 * 114.92041 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.53854 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46763 * 279.69913 * 5 4 3 7 7 C 1.47443 * 110.99772 * 73.83195 * 6 5 4 8 8 C 1.54319 * 107.23556 * 236.73953 * 7 6 5 9 9 C 1.55142 * 103.17199 * 337.62990 * 8 7 6 10 10 O 1.42905 * 110.98857 * 277.64344 * 9 8 7 11 11 C 1.50707 * 110.99038 * 153.83289 * 9 8 7 12 12 H 1.08000 * 120.00034 * 241.45457 * 11 9 8 13 13 C 1.37873 * 120.00040 * 61.45112 * 11 9 8 14 14 N 1.31519 * 120.00262 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99972 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47539 * 59.99432 * 15 13 11 17 17 H 1.48505 * 109.47473 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46909 * 299.99952 * 15 13 11 19 19 C 1.47842 * 111.00684 * 312.98816 * 6 5 4 20 20 C 1.33385 * 114.91841 * 0.24046 * 4 3 2 21 21 C 1.50702 * 125.20039 * 179.75621 * 20 4 3 22 22 S 1.75879 * 125.20611 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.46933 * 90.00498 * 1 2 3 24 24 H 1.09001 * 109.47039 * 209.99671 * 1 2 3 25 25 H 1.08994 * 109.47301 * 330.00170 * 1 2 3 26 26 H 1.08000 * 122.54359 * 0.05166 * 3 2 1 27 27 H 1.09008 * 109.47235 * 159.70691 * 5 4 3 28 28 H 1.08994 * 109.47544 * 39.70328 * 5 4 3 29 29 H 1.09003 * 109.89061 * 117.33413 * 7 6 5 30 30 H 1.09004 * 109.88821 * 356.14529 * 7 6 5 31 31 H 1.09007 * 110.70690 * 96.09016 * 8 7 6 32 32 H 1.08999 * 110.71221 * 219.15871 * 8 7 6 33 33 H 0.96696 * 114.00266 * 298.55177 * 10 9 8 34 34 H 0.96994 * 119.99858 * 180.02562 * 14 13 11 35 35 H 1.08998 * 110.37097 * 265.19424 * 19 6 5 36 36 H 1.09000 * 110.37060 * 27.52859 * 19 6 5 37 37 H 1.09000 * 109.47366 * 80.23835 * 21 20 4 38 38 H 1.09007 * 109.47024 * 200.23640 * 21 20 4 39 39 H 1.09002 * 109.47468 * 320.23908 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 -0.0006 5 6 4.6622 1.9484 -0.0012 6 7 4.8232 2.4658 -1.3666 7 6 3.6639 3.2872 -1.7604 8 6 3.0838 2.6707 -3.0507 9 6 4.2827 1.8768 -3.6331 10 8 5.1563 2.7356 -4.3690 11 6 3.8069 0.7319 -4.4899 12 1 4.0555 -0.2840 -4.2204 13 6 3.0543 0.9813 -5.6179 14 7 2.7511 2.2183 -5.9459 15 14 2.4640 -0.4378 -6.6794 16 1 1.6071 -1.3397 -5.8685 17 1 1.6810 0.0927 -7.8243 18 1 3.6353 -1.1948 -7.1898 19 6 4.9692 1.3611 -2.3382 20 6 3.9751 -0.4476 -0.0061 21 6 5.3861 -0.9769 -0.0131 22 16 2.5210 -1.4371 -0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.8669 2.0895 0.0008 27 1 5.6164 1.5598 0.3549 28 1 4.3296 2.7524 0.6552 29 1 3.9828 4.3121 -1.9501 30 1 2.9123 3.2705 -0.9711 31 1 2.2547 2.0018 -2.8194 32 1 2.7662 3.4513 -3.7420 33 1 4.7398 3.1607 -5.1312 34 1 2.2213 2.3937 -6.7392 35 1 6.0235 1.1561 -2.5240 36 1 4.4662 0.4657 -1.9731 37 1 5.7913 -0.9447 0.9983 38 1 5.3862 -2.0062 -0.3720 39 1 6.0013 -0.3627 -0.6707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:57 Heat of formation + Delta-G solvation = -16.381332 kcal Electronic energy + Delta-G solvation = -21174.803402 eV Core-core repulsion = 18208.771532 eV Total energy + Delta-G solvation = -2966.031870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53721 -37.06749 -34.49502 -32.92585 -32.07406 -30.00977 -29.16581 -27.92931 -26.03404 -24.49061 -23.58096 -21.56599 -19.79401 -19.49657 -17.91481 -16.99718 -16.73105 -15.24574 -14.99174 -14.81294 -14.46716 -13.78675 -13.72604 -13.35944 -13.29529 -13.09378 -12.74616 -12.47843 -12.33330 -11.99957 -11.61447 -11.52054 -11.25743 -11.22197 -11.05313 -10.85067 -10.79427 -10.66185 -10.40634 -10.39781 -10.18166 -9.75509 -9.10330 -8.54206 -8.13993 -8.04041 -7.96192 -7.52585 -6.15619 -4.22622 1.28231 1.89386 2.25799 2.99426 3.25773 3.30112 3.33687 4.33496 4.85402 4.99341 5.11162 5.15338 5.36588 5.38343 5.56448 5.63686 5.67273 5.69540 5.81251 5.91231 5.94940 6.01370 6.10708 6.17021 6.21854 6.28031 6.47581 6.58426 6.69429 6.76445 6.84970 6.96517 7.17021 7.51491 7.56310 7.70181 7.82450 7.88727 8.24803 8.78890 9.45294 9.58092 10.91358 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.007677 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.223007 B = 3646.283824 C = 4312.718631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.181 4.181 3 C -0.120 4.120 4 C -0.126 4.126 5 C 0.105 3.895 6 N -0.515 5.515 7 C 0.039 3.961 8 C -0.139 4.139 9 C 0.253 3.747 10 O -0.581 6.581 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.048 3.952 20 C -0.167 4.167 21 C -0.084 4.084 22 S 0.076 5.924 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.375 0.625 34 H 0.266 0.734 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -3.339 12.523 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.297 4.297 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.026 4.026 6 N -0.237 5.237 7 C -0.088 4.088 8 C -0.178 4.178 9 C 0.213 3.787 10 O -0.389 6.389 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.079 4.079 20 C -0.285 4.285 21 C -0.143 4.143 22 S 0.340 5.660 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.152 0.848 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.387 -4.666 12.852 13.743 hybrid contribution -1.439 0.409 -1.156 1.891 sum -2.826 -4.257 11.696 12.763 Atomic orbital electron populations 1.20288 0.88239 1.02423 1.02804 1.24253 0.99527 0.95503 1.10463 1.19924 0.92443 0.98913 1.03699 1.19480 0.95538 0.95170 1.03807 1.21184 0.95500 0.93104 0.92771 1.63952 1.38986 1.20071 1.00731 1.22909 0.90765 0.97529 0.97627 1.23186 0.99777 1.00135 0.94701 1.19605 0.84602 0.87326 0.87160 1.86144 1.42281 1.64875 1.45569 1.21466 1.32823 0.93223 1.09277 0.92435 1.24959 0.94993 0.95828 0.97180 1.69733 1.39001 1.18490 1.26317 0.86613 0.78893 0.82476 0.79802 1.20191 1.21175 1.20061 1.23323 1.00319 0.92579 0.91671 1.24170 0.98592 0.95697 1.10025 1.20409 0.90181 1.01210 1.02465 1.83958 0.97225 1.10173 1.74611 0.90696 0.91795 0.90878 0.84811 0.90524 0.90862 0.91933 0.94254 0.92759 0.90853 0.77568 0.92461 0.91839 0.91655 0.91079 0.91628 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.38 36.01 0.37 -0.60 16 2 C -0.18 -2.76 6.51 -36.00 -0.23 -3.00 16 3 C -0.12 -1.94 8.91 -41.21 -0.37 -2.31 16 4 C -0.13 -2.07 3.76 -106.25 -0.40 -2.47 16 5 C 0.11 1.70 5.39 -4.98 -0.03 1.67 16 6 N -0.52 -10.16 5.41 -232.38 -1.26 -11.42 16 7 C 0.04 0.78 6.29 -2.84 -0.02 0.77 16 8 C -0.14 -3.26 5.36 -24.91 -0.13 -3.40 16 9 C 0.25 6.42 0.88 -89.38 -0.08 6.34 16 10 O -0.58 -15.59 13.16 -35.23 -0.46 -16.05 16 11 C -0.53 -14.50 8.28 -34.44 -0.29 -14.78 16 12 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 13 C 0.07 1.95 5.29 -17.82 -0.09 1.86 16 14 N -0.90 -24.29 10.75 55.43 0.60 -23.69 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.05 1.07 4.65 -2.05 -0.01 1.06 16 20 C -0.17 -2.62 5.10 -36.00 -0.18 -2.80 16 21 C -0.08 -1.12 9.21 36.01 0.33 -0.79 16 22 S 0.08 1.14 23.31 -107.50 -2.51 -1.36 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.13 2.06 6.55 -52.49 -0.34 1.72 16 27 H 0.08 1.14 7.01 -51.92 -0.36 0.77 16 28 H 0.07 1.08 7.92 -51.93 -0.41 0.66 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.04 0.70 5.23 -51.93 -0.27 0.43 16 31 H 0.05 1.33 8.03 -51.93 -0.42 0.92 16 32 H 0.07 1.84 7.53 -51.93 -0.39 1.45 16 33 H 0.38 10.11 7.57 45.56 0.34 10.45 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.43 4.22 -51.93 -0.22 1.21 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.08 1.19 6.32 -51.93 -0.33 0.86 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -28.65 316.97 -9.91 -38.56 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -4.90 Total: 11.56 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.13 Total: -18.45 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.66 Total: -35.11 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.46 Total: -16.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.65 -9.91 -38.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.174 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds