Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33391 * 125.20030 * 2 1 4 4 C 1.38428 * 114.92041 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.53854 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46763 * 279.69913 * 5 4 3 7 7 C 1.47443 * 110.99772 * 73.83195 * 6 5 4 8 8 C 1.54319 * 107.23556 * 236.73953 * 7 6 5 9 9 C 1.55142 * 103.17199 * 337.62990 * 8 7 6 10 10 O 1.42905 * 110.98857 * 277.64344 * 9 8 7 11 11 C 1.50707 * 110.99038 * 153.83289 * 9 8 7 12 12 H 1.08000 * 120.00034 * 241.45457 * 11 9 8 13 13 C 1.37873 * 120.00040 * 61.45112 * 11 9 8 14 14 N 1.31519 * 120.00262 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99972 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47539 * 59.99432 * 15 13 11 17 17 H 1.48505 * 109.47473 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46909 * 299.99952 * 15 13 11 19 19 C 1.47842 * 111.00684 * 312.98816 * 6 5 4 20 20 C 1.33385 * 114.91841 * 0.24046 * 4 3 2 21 21 C 1.50702 * 125.20039 * 179.75621 * 20 4 3 22 22 S 1.75879 * 125.20611 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.46933 * 90.00498 * 1 2 3 24 24 H 1.09001 * 109.47039 * 209.99671 * 1 2 3 25 25 H 1.08994 * 109.47301 * 330.00170 * 1 2 3 26 26 H 1.08000 * 122.54359 * 0.05166 * 3 2 1 27 27 H 1.09008 * 109.47235 * 159.70691 * 5 4 3 28 28 H 1.08994 * 109.47544 * 39.70328 * 5 4 3 29 29 H 1.09003 * 109.89061 * 117.33413 * 7 6 5 30 30 H 1.09004 * 109.88821 * 356.14529 * 7 6 5 31 31 H 1.09007 * 110.70690 * 96.09016 * 8 7 6 32 32 H 1.08999 * 110.71221 * 219.15871 * 8 7 6 33 33 H 0.96696 * 114.00266 * 298.55177 * 10 9 8 34 34 H 0.96994 * 119.99858 * 180.02562 * 14 13 11 35 35 H 1.08998 * 110.37097 * 265.19424 * 19 6 5 36 36 H 1.09000 * 110.37060 * 27.52859 * 19 6 5 37 37 H 1.09000 * 109.47366 * 80.23835 * 21 20 4 38 38 H 1.09007 * 109.47024 * 200.23640 * 21 20 4 39 39 H 1.09002 * 109.47468 * 320.23908 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 -0.0006 5 6 4.6622 1.9484 -0.0012 6 7 4.8232 2.4658 -1.3666 7 6 3.6639 3.2872 -1.7604 8 6 3.0838 2.6707 -3.0507 9 6 4.2827 1.8768 -3.6331 10 8 5.1563 2.7356 -4.3690 11 6 3.8069 0.7319 -4.4899 12 1 4.0555 -0.2840 -4.2204 13 6 3.0543 0.9813 -5.6179 14 7 2.7511 2.2183 -5.9459 15 14 2.4640 -0.4378 -6.6794 16 1 1.6071 -1.3397 -5.8685 17 1 1.6810 0.0927 -7.8243 18 1 3.6353 -1.1948 -7.1898 19 6 4.9692 1.3611 -2.3382 20 6 3.9751 -0.4476 -0.0061 21 6 5.3861 -0.9769 -0.0131 22 16 2.5210 -1.4371 -0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.8669 2.0895 0.0008 27 1 5.6164 1.5598 0.3549 28 1 4.3296 2.7524 0.6552 29 1 3.9828 4.3121 -1.9501 30 1 2.9123 3.2705 -0.9711 31 1 2.2547 2.0018 -2.8194 32 1 2.7662 3.4513 -3.7420 33 1 4.7398 3.1607 -5.1312 34 1 2.2213 2.3937 -6.7392 35 1 6.0235 1.1561 -2.5240 36 1 4.4662 0.4657 -1.9731 37 1 5.7913 -0.9447 0.9983 38 1 5.3862 -2.0062 -0.3720 39 1 6.0013 -0.3627 -0.6707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -35.258018 kcal Electronic energy + Delta-G solvation = -21175.621957 eV Core-core repulsion = 18208.771532 eV Total energy + Delta-G solvation = -2966.850425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98848 -38.64865 -36.22546 -34.18595 -34.12590 -31.59510 -30.39353 -29.67965 -27.64352 -26.09129 -24.92943 -22.91085 -21.57961 -21.14248 -19.23025 -18.93421 -17.92573 -16.93580 -16.84022 -16.49650 -16.00716 -15.48952 -15.13897 -14.68699 -14.45192 -14.32011 -14.04843 -13.87283 -13.74227 -13.67534 -13.31420 -13.05610 -12.82063 -12.69812 -12.59583 -12.41299 -12.31456 -12.26654 -12.13523 -12.06762 -11.62646 -11.54041 -11.04521 -10.58956 -10.06337 -9.36719 -9.21257 -9.02944 -8.20951 -6.35457 0.09512 0.72988 1.07030 1.37460 1.38595 1.45937 1.77026 2.36628 3.03428 3.31853 3.86253 3.96602 4.02882 4.15167 4.19530 4.31978 4.39376 4.47070 4.58422 4.63031 4.68950 4.72393 4.75754 4.82764 4.87561 4.95282 5.03207 5.11558 5.14064 5.28432 5.35199 5.48080 5.53362 5.58157 5.65831 5.82491 6.00686 6.26147 6.31916 6.68941 7.35292 7.47149 8.84098 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.007677 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.223007 B = 3646.283824 C = 4312.718631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.188 4.188 3 C -0.138 4.138 4 C -0.141 4.141 5 C 0.106 3.894 6 N -0.520 5.520 7 C 0.048 3.952 8 C -0.125 4.125 9 C 0.235 3.765 10 O -0.590 6.590 11 C -0.554 4.554 12 H 0.047 0.953 13 C 0.034 3.966 14 N -0.910 5.910 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.062 3.938 20 C -0.176 4.176 21 C -0.084 4.084 22 S 0.079 5.921 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.370 0.630 34 H 0.268 0.732 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 -3.919 13.649 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.305 4.305 3 C -0.168 4.168 4 C -0.154 4.154 5 C -0.024 4.024 6 N -0.242 5.242 7 C -0.079 4.079 8 C -0.164 4.164 9 C 0.195 3.805 10 O -0.398 6.398 11 C -0.592 4.592 12 H 0.065 0.935 13 C -0.167 4.167 14 N -0.549 5.549 15 Si 0.776 3.224 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.200 1.200 19 C -0.065 4.065 20 C -0.295 4.295 21 C -0.142 4.142 22 S 0.343 5.657 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.218 0.782 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.797 -5.243 13.995 15.052 hybrid contribution -1.316 0.567 -1.492 2.068 sum -3.113 -4.676 12.503 13.707 Atomic orbital electron populations 1.20382 0.86391 1.04175 1.02823 1.24674 1.00987 0.95282 1.09605 1.20079 0.92657 0.99445 1.04575 1.19533 0.95685 0.95433 1.04787 1.21276 0.96504 0.93845 0.90759 1.63883 1.38946 1.19421 1.01942 1.22818 0.91349 0.97208 0.96570 1.22922 0.98644 0.98935 0.95909 1.19873 0.85616 0.87022 0.87991 1.86138 1.42954 1.65114 1.45546 1.21693 1.33684 0.93387 1.10459 0.93491 1.25603 0.94978 0.98012 0.98097 1.69817 1.38924 1.19673 1.26497 0.85741 0.78409 0.79875 0.78413 1.19872 1.20396 1.19956 1.23095 0.99214 0.93343 0.90891 1.24524 0.99735 0.95832 1.09368 1.20470 0.88820 1.01169 1.03778 1.83910 0.97156 1.10243 1.74364 0.91388 0.90094 0.89168 0.84386 0.89050 0.88951 0.91851 0.91769 0.94354 0.93042 0.78169 0.92304 0.92901 0.91419 0.88558 0.90977 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 10.38 71.24 0.74 -1.07 16 2 C -0.19 -5.49 6.51 24.59 0.16 -5.33 16 3 C -0.14 -4.25 8.91 21.22 0.19 -4.06 16 4 C -0.14 -4.39 3.76 -20.92 -0.08 -4.47 16 5 C 0.11 3.20 5.39 85.56 0.46 3.67 16 6 N -0.52 -19.82 5.41 -889.12 -4.81 -24.64 16 7 C 0.05 1.87 6.29 86.65 0.54 2.41 16 8 C -0.12 -5.90 5.36 31.78 0.17 -5.73 16 9 C 0.23 12.01 0.88 -9.99 -0.01 12.00 16 10 O -0.59 -32.13 13.16 -148.98 -1.96 -34.09 16 11 C -0.55 -30.63 8.28 25.60 0.21 -30.42 16 12 H 0.05 2.62 7.79 -2.91 -0.02 2.60 16 13 C 0.03 1.82 5.29 84.65 0.45 2.27 16 14 N -0.91 -49.63 10.75 21.45 0.23 -49.40 16 15 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 C 0.06 2.73 4.65 86.94 0.40 3.14 16 20 C -0.18 -5.27 5.10 24.59 0.13 -5.14 16 21 C -0.08 -2.09 9.21 71.24 0.66 -1.44 16 22 S 0.08 2.26 23.31 -56.49 -1.32 0.95 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.14 4.02 6.55 -2.91 -0.02 4.00 16 27 H 0.09 2.49 7.01 -2.38 -0.02 2.47 16 28 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.17 5.23 -2.38 -0.01 2.15 16 31 H 0.04 1.89 8.03 -2.38 -0.02 1.87 16 32 H 0.05 2.61 7.53 -2.39 -0.02 2.60 16 33 H 0.37 20.40 7.57 -74.06 -0.56 19.84 16 34 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.94 4.22 -2.39 -0.01 2.93 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.07 1.96 6.32 -2.39 -0.02 1.95 16 Total: -1.00 -60.32 316.97 -1.31 -61.63 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.50 Total: 34.56 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 4.02 Total: -34.16 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -4.58 Total: -74.04 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.96 Total: -34.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.32 Total: 0.95 kcal Total: -60.32 -1.31 -61.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.371 kcal (2) G-P(sol) polarization free energy of solvation -60.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds