Wall clock time and date at job start Tue Mar 31 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33390 * 125.20554 * 2 1 4 4 C 1.38424 * 114.92101 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.54044 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47366 * 260.02983 * 5 4 3 7 7 C 1.47899 * 111.00068 * 69.87158 * 6 5 4 8 8 C 1.53997 * 107.05889 * 145.84368 * 7 6 5 9 9 C 1.54593 * 105.13807 * 358.77516 * 8 7 6 10 10 O 1.42904 * 110.72258 * 96.40366 * 9 8 7 11 11 C 1.50705 * 110.72583 * 219.68092 * 9 8 7 12 12 H 1.07993 * 119.99953 * 118.54560 * 11 9 8 13 13 C 1.37878 * 119.99835 * 298.55374 * 11 9 8 14 14 N 1.31514 * 120.00255 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99873 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47393 * 89.99416 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99665 * 15 13 11 18 18 H 1.48501 * 109.47020 * 329.99469 * 15 13 11 19 19 C 1.48538 * 111.00123 * 187.27000 * 6 5 4 20 20 C 1.33396 * 114.92309 * 0.25228 * 4 3 2 21 21 C 1.50695 * 125.20177 * 179.75192 * 20 4 3 22 22 S 1.75883 * 109.58956 * 359.63365 * 20 4 3 23 23 H 1.09003 * 109.46886 * 89.99699 * 1 2 3 24 24 H 1.08999 * 109.47286 * 209.99493 * 1 2 3 25 25 H 1.08999 * 109.46672 * 329.99795 * 1 2 3 26 26 H 1.07993 * 122.53938 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.47393 * 140.02889 * 5 4 3 28 28 H 1.09004 * 109.46904 * 20.02629 * 5 4 3 29 29 H 1.09004 * 109.91646 * 26.49394 * 7 6 5 30 30 H 1.08998 * 109.92144 * 265.19786 * 7 6 5 31 31 H 1.09004 * 110.30998 * 117.69119 * 8 7 6 32 32 H 1.08998 * 110.30811 * 239.85930 * 8 7 6 33 33 H 0.96700 * 114.00523 * 61.45046 * 10 9 8 34 34 H 0.96994 * 120.00103 * 180.02562 * 14 13 11 35 35 H 1.09007 * 110.66246 * 318.71191 * 19 6 5 36 36 H 1.08993 * 110.66671 * 81.67342 * 19 6 5 37 37 H 1.09000 * 109.46991 * 90.00374 * 21 20 4 38 38 H 1.09006 * 109.47099 * 209.99610 * 21 20 4 39 39 H 1.09003 * 109.47307 * 330.00181 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 0.0001 6 7 5.1715 2.1433 -1.3639 7 6 4.1345 2.7342 -2.2373 8 6 4.8569 3.6590 -3.2345 9 6 6.3522 3.5772 -2.8505 10 8 7.0328 2.6231 -3.6683 11 6 7.0042 4.9319 -2.9540 12 1 7.4340 5.3927 -2.0769 13 6 7.0520 5.5830 -4.1684 14 7 6.5290 5.0217 -5.2365 15 14 7.8597 7.2625 -4.2965 16 1 9.3016 7.0958 -4.6100 17 1 7.2057 8.0452 -5.3757 18 1 7.7137 7.9817 -3.0054 19 6 6.3060 3.1020 -1.3766 20 6 3.9751 -0.4479 -0.0043 21 6 5.3860 -0.9771 -0.0102 22 16 2.5209 -1.4372 0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3632 0.8900 0.5139 26 1 1.8670 2.0894 -0.0004 27 1 5.4868 1.6797 0.6607 28 1 4.2011 2.8711 0.3512 29 1 3.4299 3.3118 -1.6387 30 1 3.6090 1.9456 -2.7759 31 1 4.7084 3.3050 -4.2547 32 1 4.4954 4.6821 -3.1318 33 1 7.0223 2.8351 -4.6117 34 1 6.5630 5.4796 -6.0909 35 1 6.1087 3.9402 -0.7082 36 1 7.2348 2.6026 -1.1013 37 1 5.7293 -1.1079 1.0161 38 1 5.4120 -1.9366 -0.5269 39 1 6.0373 -0.2699 -0.5239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:59 Heat of formation + Delta-G solvation = -22.337266 kcal Electronic energy + Delta-G solvation = -20232.598382 eV Core-core repulsion = 17266.308244 eV Total energy + Delta-G solvation = -2966.290139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.05206 -37.53974 -34.59713 -32.99813 -32.09145 -30.09833 -29.23776 -27.94877 -26.18471 -24.34158 -23.69436 -21.58734 -19.90980 -19.46184 -18.08727 -16.94775 -16.88173 -15.32828 -14.90721 -14.74374 -14.52283 -13.95596 -13.84143 -13.44767 -13.27028 -13.15206 -12.83942 -12.61367 -12.30217 -12.11441 -11.66785 -11.56337 -11.45437 -11.25196 -11.19185 -11.00324 -10.85239 -10.60854 -10.45127 -10.41964 -10.28666 -9.72922 -9.13022 -8.57254 -8.29792 -8.17053 -8.01091 -7.65605 -6.18532 -4.26910 1.15037 1.74020 2.11303 2.85253 3.23261 3.30427 3.33157 4.31177 4.74203 4.93833 5.07174 5.11592 5.21483 5.36866 5.43871 5.51799 5.64521 5.73718 5.74821 5.81202 5.84118 5.93115 6.02859 6.09121 6.22908 6.30402 6.32759 6.50975 6.60537 6.64819 6.76595 6.94197 7.09462 7.43590 7.54746 7.60713 7.75817 7.85042 8.21857 8.75712 9.42067 9.58668 10.88408 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032603 B = 0.004105 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.622164 B = 6818.753604 C = 7136.914305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.190 4.190 3 C -0.122 4.122 4 C -0.094 4.094 5 C 0.104 3.896 6 N -0.505 5.505 7 C 0.043 3.957 8 C -0.129 4.129 9 C 0.258 3.742 10 O -0.580 6.580 11 C -0.538 4.538 12 H 0.060 0.940 13 C 0.072 3.928 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.052 3.948 20 C -0.150 4.150 21 C -0.084 4.084 22 S 0.067 5.933 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.376 0.624 34 H 0.266 0.734 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -9.206 9.855 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.307 4.307 3 C -0.152 4.152 4 C -0.106 4.106 5 C -0.027 4.027 6 N -0.229 5.229 7 C -0.085 4.085 8 C -0.168 4.168 9 C 0.218 3.782 10 O -0.387 6.387 11 C -0.577 4.577 12 H 0.078 0.922 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.075 4.075 20 C -0.268 4.268 21 C -0.143 4.143 22 S 0.332 5.668 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.225 0.775 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.087 -11.544 10.071 17.811 hybrid contribution 0.136 3.565 -0.438 3.595 sum -8.950 -7.978 9.633 15.380 Atomic orbital electron populations 1.20273 0.88187 1.02648 1.02518 1.24227 0.99479 0.95521 1.11435 1.19955 0.92582 0.98999 1.03667 1.18690 0.94035 0.94148 1.03709 1.20873 0.95187 0.94188 0.92436 1.64783 1.07122 1.44439 1.06578 1.22860 0.93624 0.96619 0.95427 1.22934 0.98594 0.97340 0.97917 1.19304 0.87387 0.86331 0.85219 1.86139 1.78805 1.51417 1.22378 1.21615 1.38315 1.02519 0.95209 0.92175 1.24992 0.94426 0.98017 0.95647 1.69741 1.44774 1.38930 0.99868 0.86505 0.79598 0.83562 0.77803 1.20448 1.21138 1.19868 1.23196 0.93086 0.92695 0.98523 1.24178 0.98525 0.95463 1.08597 1.20375 0.90285 1.01600 1.01990 1.83999 0.97403 1.10205 1.75238 0.90993 0.91697 0.90833 0.84898 0.90502 0.94438 0.95515 0.92184 0.91628 0.92223 0.77458 0.92406 0.93766 0.90956 0.91489 0.91828 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.38 36.00 0.37 -0.36 16 2 C -0.19 -2.42 6.51 -36.00 -0.23 -2.65 16 3 C -0.12 -1.71 9.72 -41.21 -0.40 -2.11 16 4 C -0.09 -1.44 4.83 -106.25 -0.51 -1.95 16 5 C 0.10 1.68 4.28 -4.98 -0.02 1.66 16 6 N -0.51 -9.85 5.09 -231.89 -1.18 -11.03 16 7 C 0.04 0.86 6.09 -2.75 -0.02 0.84 16 8 C -0.13 -3.03 5.26 -25.37 -0.13 -3.16 16 9 C 0.26 6.43 0.95 -89.91 -0.09 6.35 16 10 O -0.58 -15.35 13.09 -35.23 -0.46 -15.81 16 11 C -0.54 -14.42 8.14 -34.44 -0.28 -14.70 16 12 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 13 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 14 N -0.89 -24.01 11.02 55.43 0.61 -23.40 16 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.05 1.13 5.67 -1.90 -0.01 1.12 16 20 C -0.15 -2.17 6.50 -36.00 -0.23 -2.41 16 21 C -0.08 -1.09 9.85 36.00 0.35 -0.74 16 22 S 0.07 0.86 23.31 -107.50 -2.51 -1.65 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 28 H 0.04 0.60 7.76 -51.93 -0.40 0.19 16 29 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.63 7.99 -51.93 -0.41 1.21 16 32 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 33 H 0.38 10.08 7.48 45.56 0.34 10.42 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.42 7.36 -51.93 -0.38 1.04 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -27.87 329.63 -10.28 -38.15 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.40 Total: 9.47 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -1.30 Total: -16.33 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.57 Total: -34.43 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.46 Total: -15.81 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.87 -10.28 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.814 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds