Wall clock time and date at job start Tue Mar 31 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33390 * 125.20554 * 2 1 4 4 C 1.38424 * 114.92101 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.54044 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47366 * 260.02983 * 5 4 3 7 7 C 1.47899 * 111.00068 * 69.87158 * 6 5 4 8 8 C 1.53997 * 107.05889 * 145.84368 * 7 6 5 9 9 C 1.54593 * 105.13807 * 358.77516 * 8 7 6 10 10 O 1.42904 * 110.72258 * 96.40366 * 9 8 7 11 11 C 1.50705 * 110.72583 * 219.68092 * 9 8 7 12 12 H 1.07993 * 119.99953 * 118.54560 * 11 9 8 13 13 C 1.37878 * 119.99835 * 298.55374 * 11 9 8 14 14 N 1.31514 * 120.00255 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99873 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47393 * 89.99416 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99665 * 15 13 11 18 18 H 1.48501 * 109.47020 * 329.99469 * 15 13 11 19 19 C 1.48538 * 111.00123 * 187.27000 * 6 5 4 20 20 C 1.33396 * 114.92309 * 0.25228 * 4 3 2 21 21 C 1.50695 * 125.20177 * 179.75192 * 20 4 3 22 22 S 1.75883 * 109.58956 * 359.63365 * 20 4 3 23 23 H 1.09003 * 109.46886 * 89.99699 * 1 2 3 24 24 H 1.08999 * 109.47286 * 209.99493 * 1 2 3 25 25 H 1.08999 * 109.46672 * 329.99795 * 1 2 3 26 26 H 1.07993 * 122.53938 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.47393 * 140.02889 * 5 4 3 28 28 H 1.09004 * 109.46904 * 20.02629 * 5 4 3 29 29 H 1.09004 * 109.91646 * 26.49394 * 7 6 5 30 30 H 1.08998 * 109.92144 * 265.19786 * 7 6 5 31 31 H 1.09004 * 110.30998 * 117.69119 * 8 7 6 32 32 H 1.08998 * 110.30811 * 239.85930 * 8 7 6 33 33 H 0.96700 * 114.00523 * 61.45046 * 10 9 8 34 34 H 0.96994 * 120.00103 * 180.02562 * 14 13 11 35 35 H 1.09007 * 110.66246 * 318.71191 * 19 6 5 36 36 H 1.08993 * 110.66671 * 81.67342 * 19 6 5 37 37 H 1.09000 * 109.46991 * 90.00374 * 21 20 4 38 38 H 1.09006 * 109.47099 * 209.99610 * 21 20 4 39 39 H 1.09003 * 109.47307 * 330.00181 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 0.0001 6 7 5.1715 2.1433 -1.3639 7 6 4.1345 2.7342 -2.2373 8 6 4.8569 3.6590 -3.2345 9 6 6.3522 3.5772 -2.8505 10 8 7.0328 2.6231 -3.6683 11 6 7.0042 4.9319 -2.9540 12 1 7.4340 5.3927 -2.0769 13 6 7.0520 5.5830 -4.1684 14 7 6.5290 5.0217 -5.2365 15 14 7.8597 7.2625 -4.2965 16 1 9.3016 7.0958 -4.6100 17 1 7.2057 8.0452 -5.3757 18 1 7.7137 7.9817 -3.0054 19 6 6.3060 3.1020 -1.3766 20 6 3.9751 -0.4479 -0.0043 21 6 5.3860 -0.9771 -0.0102 22 16 2.5209 -1.4372 0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3632 0.8900 0.5139 26 1 1.8670 2.0894 -0.0004 27 1 5.4868 1.6797 0.6607 28 1 4.2011 2.8711 0.3512 29 1 3.4299 3.3118 -1.6387 30 1 3.6090 1.9456 -2.7759 31 1 4.7084 3.3050 -4.2547 32 1 4.4954 4.6821 -3.1318 33 1 7.0223 2.8351 -4.6117 34 1 6.5630 5.4796 -6.0909 35 1 6.1087 3.9402 -0.7082 36 1 7.2348 2.6026 -1.1013 37 1 5.7293 -1.1079 1.0161 38 1 5.4120 -1.9366 -0.5269 39 1 6.0373 -0.2699 -0.5239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:59 Heat of formation + Delta-G solvation = -39.763131 kcal Electronic energy + Delta-G solvation = -20233.354025 eV Core-core repulsion = 17266.308244 eV Total energy + Delta-G solvation = -2967.045781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46548 -38.99247 -36.33757 -34.15556 -34.07471 -31.65853 -30.31647 -29.72638 -27.70567 -25.91889 -24.95344 -22.84065 -21.46168 -21.28118 -19.29178 -18.84107 -17.95311 -17.04338 -16.84739 -16.11078 -15.92648 -15.59104 -15.02666 -14.71731 -14.69972 -14.21391 -14.06176 -13.89229 -13.75085 -13.51329 -13.23806 -13.08701 -12.91638 -12.86796 -12.56453 -12.41651 -12.35779 -12.23478 -12.08479 -12.01400 -11.59617 -11.56917 -11.04549 -10.58793 -10.08663 -9.33283 -9.26409 -9.09661 -8.20183 -6.36345 0.11206 0.73246 1.07526 1.40821 1.42906 1.51904 1.74918 2.39130 3.04627 3.30344 3.89089 3.95607 4.02245 4.14718 4.15256 4.34729 4.39368 4.47001 4.58381 4.60103 4.69853 4.75020 4.75871 4.77748 4.84198 4.87965 5.09629 5.11312 5.22410 5.26647 5.31798 5.48556 5.53467 5.57750 5.67561 5.78161 5.94145 6.20393 6.30347 6.70206 7.35766 7.49095 8.85231 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032603 B = 0.004105 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.622164 B = 6818.753604 C = 7136.914305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.187 4.187 3 C -0.143 4.143 4 C -0.110 4.110 5 C 0.107 3.893 6 N -0.509 5.509 7 C 0.056 3.944 8 C -0.120 4.120 9 C 0.241 3.759 10 O -0.589 6.589 11 C -0.563 4.563 12 H 0.056 0.944 13 C 0.030 3.970 14 N -0.912 5.912 15 Si 0.959 3.041 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.061 3.939 20 C -0.168 4.168 21 C -0.081 4.081 22 S 0.091 5.909 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.370 0.630 34 H 0.268 0.732 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -9.516 10.946 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.304 4.304 3 C -0.172 4.172 4 C -0.121 4.121 5 C -0.023 4.023 6 N -0.233 5.233 7 C -0.072 4.072 8 C -0.159 4.159 9 C 0.201 3.799 10 O -0.396 6.396 11 C -0.601 4.601 12 H 0.074 0.926 13 C -0.170 4.170 14 N -0.551 5.551 15 Si 0.784 3.216 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.066 4.066 20 C -0.286 4.286 21 C -0.140 4.140 22 S 0.355 5.645 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.157 0.843 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.218 0.782 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.098 -11.863 11.178 19.174 hybrid contribution 0.415 3.594 -0.772 3.699 sum -9.683 -8.270 10.405 16.445 Atomic orbital electron populations 1.20402 0.85916 1.04052 1.03366 1.24681 1.01066 0.95044 1.09589 1.20050 0.92302 0.99823 1.05074 1.18688 0.94332 0.94045 1.05069 1.20881 0.95950 0.95025 0.90451 1.64732 1.06509 1.43379 1.08663 1.22682 0.93589 0.96000 0.94951 1.22729 0.98347 0.97098 0.97682 1.19568 0.87748 0.85780 0.86835 1.86133 1.79309 1.52025 1.22112 1.21898 1.39088 1.03674 0.95446 0.92592 1.25689 0.94800 1.01216 0.95319 1.69833 1.45112 1.40033 1.00138 0.85555 0.78551 0.79620 0.77868 1.20268 1.20664 1.19403 1.23026 0.94016 0.93265 0.96333 1.24443 0.99787 0.95869 1.08481 1.20358 0.89363 1.01265 1.02998 1.83898 0.96308 1.09721 1.74554 0.90291 0.90238 0.89531 0.84326 0.89591 0.93908 0.93851 0.92238 0.93774 0.93771 0.78166 0.92275 0.93214 0.91196 0.89637 0.90958 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.38 71.24 0.74 -0.53 16 2 C -0.19 -4.33 6.51 24.59 0.16 -4.17 16 3 C -0.14 -3.77 9.72 21.22 0.21 -3.56 16 4 C -0.11 -3.19 4.83 -20.92 -0.10 -3.29 16 5 C 0.11 3.34 4.28 85.56 0.37 3.71 16 6 N -0.51 -19.55 5.09 -887.57 -4.51 -24.06 16 7 C 0.06 2.22 6.09 86.45 0.53 2.74 16 8 C -0.12 -5.70 5.26 31.47 0.17 -5.54 16 9 C 0.24 12.16 0.95 -10.34 -0.01 12.15 16 10 O -0.59 -31.81 13.09 -148.98 -1.95 -33.76 16 11 C -0.56 -30.44 8.14 25.60 0.21 -30.24 16 12 H 0.06 2.99 7.78 -2.91 -0.02 2.97 16 13 C 0.03 1.62 5.28 84.65 0.45 2.06 16 14 N -0.91 -49.53 11.02 21.45 0.24 -49.30 16 15 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.06 2.63 5.67 86.65 0.49 3.13 16 20 C -0.17 -4.61 6.50 24.59 0.16 -4.45 16 21 C -0.08 -2.02 9.85 71.23 0.70 -1.32 16 22 S 0.09 2.13 23.31 -56.49 -1.32 0.82 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.09 2.50 7.76 -2.39 -0.02 2.48 16 28 H 0.04 1.29 7.76 -2.38 -0.02 1.28 16 29 H 0.04 1.57 7.57 -2.39 -0.02 1.56 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 2.24 7.99 -2.39 -0.02 2.22 16 32 H 0.04 2.19 7.84 -2.39 -0.02 2.17 16 33 H 0.37 20.43 7.48 -74.06 -0.55 19.88 16 34 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.05 2.06 7.92 -2.38 -0.02 2.04 16 36 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.07 2.14 7.36 -2.39 -0.02 2.13 16 Total: -1.00 -58.74 329.63 -0.97 -59.71 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.48 Total: 31.62 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.06 Total: -29.32 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -4.28 Total: -73.36 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.95 Total: -33.76 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.32 Total: 0.82 kcal Total: -58.74 -0.97 -59.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.946 kcal (2) G-P(sol) polarization free energy of solvation -58.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds