Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47138 * 2 1 4 4 C 1.33393 * 125.20363 * 90.00165 * 3 2 1 5 5 C 1.38417 * 114.91894 * 179.74613 * 4 3 2 6 6 C 1.33390 * 114.92654 * 0.43320 * 5 4 3 7 7 C 1.50698 * 125.20494 * 179.85234 * 6 5 4 8 8 N 1.46901 * 109.46582 * 89.72113 * 7 6 5 9 9 C 1.47905 * 111.00203 * 69.87698 * 8 7 6 10 10 C 1.53998 * 107.05682 * 214.15623 * 9 8 7 11 11 C 1.54592 * 105.14106 * 1.21793 * 10 9 8 12 12 O 1.42904 * 110.72955 * 263.42508 * 11 10 9 13 13 C 1.50700 * 110.72358 * 140.31790 * 11 10 9 14 14 H 1.07999 * 119.99763 * 5.10461 * 13 11 10 15 15 C 1.37874 * 119.99930 * 185.10679 * 13 11 10 16 16 N 1.31520 * 120.00048 * 183.21834 * 15 13 11 17 17 Si 1.86803 * 120.00395 * 3.21702 * 15 13 11 18 18 H 1.48500 * 109.47192 * 84.79144 * 17 15 13 19 19 H 1.48496 * 109.47355 * 204.79764 * 17 15 13 20 20 H 1.48508 * 109.46755 * 324.79778 * 17 15 13 21 21 C 1.48529 * 111.00289 * 312.47736 * 8 7 6 22 22 S 1.75883 * 109.58834 * 359.59182 * 6 5 4 23 23 H 1.09001 * 109.46841 * 299.99874 * 1 2 3 24 24 H 1.08996 * 109.47176 * 59.99698 * 1 2 3 25 25 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46841 * 240.00125 * 2 1 3 27 27 H 1.08996 * 109.47176 * 120.00302 * 2 1 3 28 28 H 1.07997 * 122.53216 * 359.97438 * 4 3 2 29 29 H 1.08007 * 122.53994 * 180.26898 * 5 4 3 30 30 H 1.08999 * 109.47102 * 209.71830 * 7 6 5 31 31 H 1.08997 * 109.47455 * 329.72342 * 7 6 5 32 32 H 1.09007 * 109.91245 * 333.50232 * 9 8 7 33 33 H 1.08991 * 109.92077 * 94.79672 * 9 8 7 34 34 H 1.08999 * 110.31150 * 120.13599 * 10 9 8 35 35 H 1.09002 * 110.30347 * 242.20862 * 10 9 8 36 36 H 0.96698 * 113.99140 * 298.55376 * 12 11 10 37 37 H 0.96996 * 120.00113 * 180.02562 * 16 15 13 38 38 H 1.09003 * 110.66559 * 278.15839 * 21 8 7 39 39 H 1.09000 * 110.66938 * 41.28690 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0900 5 6 2.7479 3.4280 0.8428 6 6 2.8559 3.7475 -0.4477 7 6 3.3274 5.0773 -0.9770 8 7 4.7860 5.0466 -1.1485 9 6 5.1696 4.1581 -2.2670 10 6 6.5094 3.5025 -1.8839 11 6 6.8385 4.0492 -0.4758 12 8 7.7297 5.1631 -0.5613 13 6 7.4236 2.9661 0.3934 14 1 7.6344 1.9930 -0.0249 15 6 7.6896 3.2175 1.7227 16 7 8.2586 2.2934 2.4657 17 14 7.2421 4.8707 2.4685 18 1 5.8211 4.8510 2.8992 19 1 8.1117 5.1358 3.6427 20 1 7.4377 5.9396 1.4562 21 6 5.4522 4.4908 0.0570 22 16 2.3709 2.3766 -1.4371 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1519 1.7602 2.0894 29 1 2.9972 4.1185 1.6350 30 1 2.8526 5.2749 -1.9381 31 1 3.0610 5.8643 -0.2715 32 1 4.4083 3.3911 -2.4098 33 1 5.2891 4.7410 -3.1801 34 1 6.4049 2.4179 -1.8537 35 1 7.2865 3.7876 -2.5932 36 1 8.5850 4.9526 -0.9602 37 1 8.4454 2.4701 3.4009 38 1 5.5613 5.2575 0.8241 39 1 4.8980 3.6353 0.4429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = -6.092009 kcal Electronic energy + Delta-G solvation = -20765.221549 eV Core-core repulsion = 17799.635857 eV Total energy + Delta-G solvation = -2965.585692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.18417 -37.57080 -35.24662 -33.56040 -32.31070 -30.98848 -28.38981 -28.12412 -25.86191 -24.19163 -22.96517 -22.04719 -20.53981 -19.60325 -18.50807 -17.31101 -16.73549 -15.58124 -15.20470 -14.99776 -14.65014 -14.22204 -13.98840 -13.88667 -13.49503 -12.91456 -12.79361 -12.75221 -12.50876 -12.05693 -11.73745 -11.62849 -11.54781 -11.40925 -11.18826 -11.06270 -10.91837 -10.72514 -10.43572 -10.36280 -10.06051 -9.87355 -8.89495 -8.63049 -8.36938 -8.21458 -8.16588 -7.88348 -6.14739 -4.24697 1.19399 1.81731 2.19043 2.98584 3.33815 3.45666 3.69827 4.48042 4.59926 4.77378 5.00809 5.07099 5.18666 5.22829 5.25546 5.41071 5.47257 5.62611 5.65058 5.72321 5.78667 5.84696 5.94167 5.95714 5.99737 6.08688 6.27967 6.33696 6.39965 6.50438 6.59011 6.70776 6.74958 6.87379 7.14009 7.36048 7.52010 7.68422 8.29330 8.83198 9.07937 9.50754 10.96052 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.006778 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.181536 B = 4130.032539 C = 4722.203897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.179 4.179 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.205 4.205 7 C 0.111 3.889 8 N -0.502 5.502 9 C 0.034 3.966 10 C -0.143 4.143 11 C 0.223 3.777 12 O -0.568 6.568 13 C -0.548 4.548 14 H 0.075 0.925 15 C 0.088 3.912 16 N -0.891 5.891 17 Si 0.870 3.130 18 H -0.285 1.285 19 H -0.301 1.301 20 H -0.224 1.224 21 C 0.036 3.964 22 S 0.090 5.910 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.359 0.641 37 H 0.265 0.735 38 H 0.069 0.931 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 -0.464 -6.443 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.296 4.296 4 C -0.161 4.161 5 C -0.152 4.152 6 C -0.324 4.324 7 C -0.019 4.019 8 N -0.224 5.224 9 C -0.094 4.094 10 C -0.182 4.182 11 C 0.183 3.817 12 O -0.374 6.374 13 C -0.585 4.585 14 H 0.093 0.907 15 C -0.117 4.117 16 N -0.528 5.528 17 Si 0.698 3.302 18 H -0.212 1.212 19 H -0.228 1.228 20 H -0.147 1.147 21 C -0.091 4.091 22 S 0.354 5.646 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.205 0.795 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.383 0.105 -7.680 16.305 hybrid contribution 0.125 -0.244 2.085 2.103 sum -14.258 -0.139 -5.595 15.317 Atomic orbital electron populations 1.21773 0.94619 1.01625 1.02272 1.20065 0.95796 0.90062 1.03219 1.24444 1.08642 1.00690 0.95848 1.20026 1.02743 0.94212 0.99148 1.20089 1.01861 0.97288 0.96011 1.25271 1.08610 1.01597 0.96884 1.21059 0.89654 0.90402 1.00799 1.65246 1.04336 1.47407 1.05385 1.22928 0.97445 0.94432 0.94631 1.22993 0.95582 1.00291 0.99292 1.19842 0.86758 0.84478 0.90648 1.86535 1.28131 1.38193 1.84503 1.21349 1.43935 0.98564 0.94694 0.90728 1.24963 0.92981 0.96758 0.96965 1.69939 1.40985 1.34282 1.07571 0.87156 0.77370 0.86931 0.78698 1.21217 1.22843 1.14682 1.23831 0.94928 0.98473 0.91832 1.83980 1.64667 1.05756 1.10161 0.92405 0.92639 0.92284 0.90971 0.90076 0.84668 0.84611 0.90328 0.89166 0.94004 0.91369 0.91316 0.92047 0.79510 0.92556 0.91256 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.15 0.37 -1.01 16 2 C -0.05 -0.60 6.43 -27.89 -0.18 -0.78 16 3 C -0.18 -2.58 5.76 -36.00 -0.21 -2.79 16 4 C -0.13 -2.03 10.05 -41.21 -0.41 -2.44 16 5 C -0.12 -2.02 8.02 -41.21 -0.33 -2.35 16 6 C -0.20 -3.32 4.31 -36.00 -0.16 -3.48 16 7 C 0.11 1.77 5.98 -4.98 -0.03 1.74 16 8 N -0.50 -9.64 5.54 -231.89 -1.28 -10.92 16 9 C 0.03 0.61 6.46 -2.75 -0.02 0.59 16 10 C -0.14 -2.91 6.25 -25.37 -0.16 -3.07 16 11 C 0.22 5.27 0.78 -89.91 -0.07 5.20 16 12 O -0.57 -13.33 10.46 -35.23 -0.37 -13.69 16 13 C -0.55 -15.20 8.82 -34.44 -0.30 -15.51 16 14 H 0.07 2.24 7.84 -52.49 -0.41 1.83 16 15 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 16 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 17 Si 0.87 22.22 23.87 -169.99 -4.06 18.17 16 18 H -0.29 -7.08 7.06 56.52 0.40 -6.68 16 19 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.22 -5.71 5.52 56.52 0.31 -5.39 16 21 C 0.04 0.81 4.01 -1.90 -0.01 0.80 16 22 S 0.09 1.32 21.45 -107.50 -2.31 -0.98 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.14 2.25 8.06 -52.48 -0.42 1.82 16 30 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.71 5.34 -51.92 -0.28 0.44 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.44 7.70 -51.93 -0.40 1.04 16 35 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.36 7.31 9.09 45.56 0.41 7.72 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 1.65 4.81 -51.93 -0.25 1.40 16 39 H 0.07 1.72 4.81 -51.93 -0.25 1.47 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -31.34 314.35 -9.15 -40.50 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.05 Total: 9.15 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.60 Total: -20.64 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.51 Total: -37.23 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.37 Total: -13.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.06 Total: 18.17 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.31 Total: -0.98 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.34 -9.15 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.403 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds