Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47138 * 2 1 4 4 C 1.33393 * 125.20363 * 90.00165 * 3 2 1 5 5 C 1.38417 * 114.91894 * 179.74613 * 4 3 2 6 6 C 1.33390 * 114.92654 * 0.43320 * 5 4 3 7 7 C 1.50698 * 125.20494 * 179.85234 * 6 5 4 8 8 N 1.46901 * 109.46582 * 89.72113 * 7 6 5 9 9 C 1.47905 * 111.00203 * 69.87698 * 8 7 6 10 10 C 1.53998 * 107.05682 * 214.15623 * 9 8 7 11 11 C 1.54592 * 105.14106 * 1.21793 * 10 9 8 12 12 O 1.42904 * 110.72955 * 263.42508 * 11 10 9 13 13 C 1.50700 * 110.72358 * 140.31790 * 11 10 9 14 14 H 1.07999 * 119.99763 * 5.10461 * 13 11 10 15 15 C 1.37874 * 119.99930 * 185.10679 * 13 11 10 16 16 N 1.31520 * 120.00048 * 183.21834 * 15 13 11 17 17 Si 1.86803 * 120.00395 * 3.21702 * 15 13 11 18 18 H 1.48500 * 109.47192 * 84.79144 * 17 15 13 19 19 H 1.48496 * 109.47355 * 204.79764 * 17 15 13 20 20 H 1.48508 * 109.46755 * 324.79778 * 17 15 13 21 21 C 1.48529 * 111.00289 * 312.47736 * 8 7 6 22 22 S 1.75883 * 109.58834 * 359.59182 * 6 5 4 23 23 H 1.09001 * 109.46841 * 299.99874 * 1 2 3 24 24 H 1.08996 * 109.47176 * 59.99698 * 1 2 3 25 25 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46841 * 240.00125 * 2 1 3 27 27 H 1.08996 * 109.47176 * 120.00302 * 2 1 3 28 28 H 1.07997 * 122.53216 * 359.97438 * 4 3 2 29 29 H 1.08007 * 122.53994 * 180.26898 * 5 4 3 30 30 H 1.08999 * 109.47102 * 209.71830 * 7 6 5 31 31 H 1.08997 * 109.47455 * 329.72342 * 7 6 5 32 32 H 1.09007 * 109.91245 * 333.50232 * 9 8 7 33 33 H 1.08991 * 109.92077 * 94.79672 * 9 8 7 34 34 H 1.08999 * 110.31150 * 120.13599 * 10 9 8 35 35 H 1.09002 * 110.30347 * 242.20862 * 10 9 8 36 36 H 0.96698 * 113.99140 * 298.55376 * 12 11 10 37 37 H 0.96996 * 120.00113 * 180.02562 * 16 15 13 38 38 H 1.09003 * 110.66559 * 278.15839 * 21 8 7 39 39 H 1.09000 * 110.66938 * 41.28690 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0900 5 6 2.7479 3.4280 0.8428 6 6 2.8559 3.7475 -0.4477 7 6 3.3274 5.0773 -0.9770 8 7 4.7860 5.0466 -1.1485 9 6 5.1696 4.1581 -2.2670 10 6 6.5094 3.5025 -1.8839 11 6 6.8385 4.0492 -0.4758 12 8 7.7297 5.1631 -0.5613 13 6 7.4236 2.9661 0.3934 14 1 7.6344 1.9930 -0.0249 15 6 7.6896 3.2175 1.7227 16 7 8.2586 2.2934 2.4657 17 14 7.2421 4.8707 2.4685 18 1 5.8211 4.8510 2.8992 19 1 8.1117 5.1358 3.6427 20 1 7.4377 5.9396 1.4562 21 6 5.4522 4.4908 0.0570 22 16 2.3709 2.3766 -1.4371 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1519 1.7602 2.0894 29 1 2.9972 4.1185 1.6350 30 1 2.8526 5.2749 -1.9381 31 1 3.0610 5.8643 -0.2715 32 1 4.4083 3.3911 -2.4098 33 1 5.2891 4.7410 -3.1801 34 1 6.4049 2.4179 -1.8537 35 1 7.2865 3.7876 -2.5932 36 1 8.5850 4.9526 -0.9602 37 1 8.4454 2.4701 3.4009 38 1 5.5613 5.2575 0.8241 39 1 4.8980 3.6353 0.4429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592521981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = -28.901934 kcal Electronic energy + Delta-G solvation = -20766.210661 eV Core-core repulsion = 17799.635857 eV Total energy + Delta-G solvation = -2966.574804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69669 -38.88327 -36.84479 -34.67253 -34.48938 -32.44486 -30.14104 -29.45791 -27.34185 -25.77719 -24.29797 -23.11134 -22.03331 -21.39953 -19.74756 -19.32547 -17.93123 -17.14195 -16.98870 -16.49965 -16.13452 -15.69729 -15.35788 -15.06198 -14.90882 -14.77379 -14.25162 -14.02909 -13.87287 -13.48359 -13.21152 -13.20392 -13.05490 -12.74404 -12.60877 -12.45313 -12.24070 -12.13234 -11.94402 -11.90551 -11.67977 -11.54813 -10.92783 -10.77617 -10.22679 -9.52621 -9.37955 -9.27789 -8.38550 -6.50565 0.00321 0.65872 0.99931 1.29867 1.37851 1.63880 1.76692 2.35930 2.97498 3.13481 3.64738 3.76366 3.84914 3.90970 4.10186 4.16093 4.27499 4.37810 4.39901 4.47055 4.61609 4.65582 4.71901 4.75890 4.83386 4.91008 4.95624 5.02281 5.09886 5.19144 5.24489 5.29588 5.34481 5.44000 5.47412 5.57054 5.87775 6.05763 6.10606 6.60426 7.20057 7.36596 8.75924 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.006778 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.181536 B = 4130.032539 C = 4722.203897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.177 4.177 4 C -0.155 4.155 5 C -0.136 4.136 6 C -0.220 4.220 7 C 0.110 3.890 8 N -0.505 5.505 9 C 0.038 3.962 10 C -0.141 4.141 11 C 0.216 3.784 12 O -0.574 6.574 13 C -0.545 4.545 14 H 0.038 0.962 15 C 0.040 3.960 16 N -0.935 5.935 17 Si 0.928 3.072 18 H -0.277 1.277 19 H -0.305 1.305 20 H -0.220 1.220 21 C 0.043 3.957 22 S 0.109 5.891 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.371 0.629 37 H 0.266 0.734 38 H 0.055 0.945 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.633 0.311 -7.841 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C -0.294 4.294 4 C -0.184 4.184 5 C -0.167 4.167 6 C -0.339 4.339 7 C -0.019 4.019 8 N -0.227 5.227 9 C -0.090 4.090 10 C -0.179 4.179 11 C 0.176 3.824 12 O -0.381 6.381 13 C -0.583 4.583 14 H 0.056 0.944 15 C -0.160 4.160 16 N -0.574 5.574 17 Si 0.755 3.245 18 H -0.203 1.203 19 H -0.233 1.233 20 H -0.142 1.142 21 C -0.084 4.084 22 S 0.374 5.626 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.219 0.781 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.009 0.883 -9.102 18.437 hybrid contribution 0.636 -0.588 2.456 2.604 sum -15.373 0.296 -6.646 16.751 Atomic orbital electron populations 1.21735 0.92830 1.02947 1.02197 1.20217 0.97289 0.88255 1.03730 1.24888 1.07266 1.01813 0.95465 1.20202 1.03859 0.94257 1.00129 1.20221 1.02386 0.97822 0.96317 1.25334 1.09179 1.02302 0.97070 1.21176 0.87668 0.90578 1.02519 1.65193 1.06331 1.47186 1.04009 1.22964 0.96114 0.94848 0.95051 1.22913 0.97744 0.99558 0.97691 1.19797 0.87089 0.83566 0.91948 1.86484 1.28995 1.37737 1.84844 1.21614 1.43141 0.98371 0.95188 0.94381 1.25668 0.93088 0.99666 0.97560 1.70054 1.43080 1.36299 1.08014 0.86251 0.77334 0.83249 0.77691 1.20296 1.23253 1.14232 1.23533 0.94409 0.97614 0.92852 1.83817 1.64138 1.04933 1.09746 0.92566 0.92622 0.90295 0.90325 0.89699 0.83790 0.85323 0.87729 0.88351 0.93033 0.88809 0.92692 0.90261 0.78130 0.92484 0.92674 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.61 16 2 C -0.06 -1.18 6.43 29.85 0.19 -0.99 16 3 C -0.18 -4.87 5.76 24.59 0.14 -4.72 16 4 C -0.15 -4.70 10.05 21.22 0.21 -4.49 16 5 C -0.14 -4.45 8.02 21.21 0.17 -4.28 16 6 C -0.22 -6.80 4.31 24.59 0.11 -6.69 16 7 C 0.11 3.23 5.98 85.56 0.51 3.74 16 8 N -0.51 -18.16 5.54 -887.56 -4.91 -23.07 16 9 C 0.04 1.26 6.46 86.45 0.56 1.82 16 10 C -0.14 -5.49 6.25 31.47 0.20 -5.30 16 11 C 0.22 10.05 0.78 -10.33 -0.01 10.04 16 12 O -0.57 -25.99 10.46 -148.98 -1.56 -27.55 16 13 C -0.55 -30.73 8.82 25.60 0.23 -30.50 16 14 H 0.04 2.37 7.84 -2.91 -0.02 2.35 16 15 C 0.04 2.35 5.47 84.65 0.46 2.81 16 16 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 17 Si 0.93 46.41 23.87 68.60 1.64 48.05 16 18 H -0.28 -13.30 7.06 99.48 0.70 -12.60 16 19 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 20 H -0.22 -10.75 5.52 99.48 0.55 -10.20 16 21 C 0.04 1.90 4.01 86.65 0.35 2.24 16 22 S 0.11 3.00 21.45 -56.49 -1.21 1.79 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.10 2.52 8.08 -2.39 -0.02 2.50 16 31 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.05 1.61 5.34 -2.38 -0.01 1.60 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.05 2.27 7.70 -2.39 -0.02 2.25 16 35 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 36 H 0.37 14.57 9.09 -74.06 -0.67 13.89 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.06 2.56 4.81 -2.39 -0.01 2.55 16 39 H 0.06 2.84 4.81 -2.39 -0.01 2.83 16 Total: -1.00 -67.03 314.35 -1.70 -68.74 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.22 Total: 27.89 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 3.83 Total: -37.91 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -4.61 Total: -81.00 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.56 Total: -27.55 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.64 Total: 48.05 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.21 Total: 1.79 kcal Total: -67.03 -1.70 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.833 kcal (2) G-P(sol) polarization free energy of solvation -67.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds