Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47179 * 2 1 4 4 C 1.33390 * 125.20259 * 89.99564 * 3 2 1 5 5 C 1.38427 * 114.92030 * 179.75132 * 4 3 2 6 6 C 1.33390 * 114.91775 * 0.43273 * 5 4 3 7 7 C 1.50699 * 125.20389 * 179.86097 * 6 5 4 8 8 N 1.46906 * 109.47317 * 89.71425 * 7 6 5 9 9 C 1.47897 * 110.99555 * 69.87469 * 8 7 6 10 10 C 1.54000 * 107.05672 * 145.84575 * 9 8 7 11 11 C 1.54598 * 105.22213 * 358.72428 * 10 9 8 12 12 O 1.42900 * 110.72206 * 96.45416 * 11 10 9 13 13 C 1.50709 * 110.72231 * 219.73162 * 11 10 9 14 14 H 1.07997 * 119.99484 * 118.54840 * 13 11 10 15 15 C 1.37869 * 119.99916 * 298.55075 * 13 11 10 16 16 N 1.31519 * 120.00697 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99863 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47004 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47386 * 119.99630 * 17 15 13 20 20 H 1.48500 * 109.47203 * 239.99911 * 17 15 13 21 21 C 1.48533 * 111.00245 * 187.27419 * 8 7 6 22 22 S 1.75881 * 109.59642 * 359.59216 * 6 5 4 23 23 H 1.09002 * 109.47271 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47239 * 300.00322 * 1 2 3 25 25 H 1.08995 * 109.46823 * 60.00229 * 1 2 3 26 26 H 1.09000 * 109.47239 * 239.99678 * 2 1 3 27 27 H 1.09009 * 109.46941 * 119.99762 * 2 1 3 28 28 H 1.07998 * 122.54247 * 359.97438 * 4 3 2 29 29 H 1.07995 * 122.54412 * 180.27563 * 5 4 3 30 30 H 1.09004 * 109.46704 * 329.71852 * 7 6 5 31 31 H 1.08991 * 109.47304 * 209.71592 * 7 6 5 32 32 H 1.09000 * 109.91881 * 26.49521 * 9 8 7 33 33 H 1.09002 * 110.08496 * 265.28456 * 9 8 7 34 34 H 1.09002 * 110.31026 * 117.69182 * 10 9 8 35 35 H 1.09000 * 110.30915 * 239.76211 * 10 9 8 36 36 H 0.96701 * 114.00035 * 61.44787 * 12 11 10 37 37 H 0.96995 * 120.00378 * 179.97438 * 16 15 13 38 38 H 1.09003 * 110.66452 * 318.71648 * 21 8 7 39 39 H 1.08998 * 110.66933 * 81.84247 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0900 5 6 2.7478 3.4281 0.8429 6 6 2.8558 3.7475 -0.4477 7 6 3.3274 5.0772 -0.9771 8 7 4.7861 5.0467 -1.1486 9 6 5.1697 4.1580 -2.2669 10 6 6.4132 4.7783 -2.9306 11 6 6.6862 6.0807 -2.1437 12 8 7.6760 5.8645 -1.1359 13 6 7.1050 7.1888 -3.0755 14 1 6.5062 8.0842 -3.1530 15 6 8.2524 7.0593 -3.8287 16 7 8.9819 5.9691 -3.7340 17 14 8.7719 8.4331 -4.9831 18 1 7.7884 9.5431 -4.9056 19 1 10.1136 8.9314 -4.5874 20 1 8.8261 7.9167 -6.3743 21 6 5.3088 6.3913 -1.5021 22 16 2.3709 2.3766 -1.4372 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.1518 1.7604 2.0895 29 1 2.9971 4.1186 1.6349 30 1 3.0609 5.8643 -0.2716 31 1 2.8527 5.2747 -1.9382 32 1 4.3552 4.0967 -2.9886 33 1 5.4073 3.1632 -1.8899 34 1 7.2634 4.1012 -2.8483 35 1 6.2102 5.0042 -3.9774 36 1 8.5361 5.5896 -1.4819 37 1 9.7890 5.8779 -4.2642 38 1 4.6529 6.8822 -2.2211 39 1 5.4295 7.0042 -0.6089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = -22.286172 kcal Electronic energy + Delta-G solvation = -19789.128235 eV Core-core repulsion = 16822.840312 eV Total energy + Delta-G solvation = -2966.287923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.61697 -37.72810 -35.02638 -33.69181 -32.10320 -30.77270 -28.33337 -27.86284 -25.72859 -24.24294 -22.90249 -22.12968 -20.32230 -19.56279 -18.39393 -17.10348 -16.70350 -15.46596 -15.16531 -14.90945 -14.46680 -14.38938 -14.12581 -13.71119 -13.29507 -13.09358 -12.77670 -12.42930 -12.22185 -12.01014 -11.78743 -11.60945 -11.35206 -11.25858 -11.19970 -11.02044 -10.85650 -10.61370 -10.54438 -10.39960 -10.32034 -9.75275 -9.15637 -8.59567 -8.38952 -8.28083 -8.04448 -7.72573 -6.19658 -4.28059 1.13027 1.74735 2.16054 2.89915 3.21498 3.30298 3.34178 4.30169 4.66322 4.74728 4.89985 4.99567 5.10040 5.12289 5.35310 5.45135 5.61331 5.64284 5.66276 5.73222 5.84348 5.86692 5.96483 5.98948 6.04285 6.19280 6.32695 6.46604 6.47910 6.61121 6.68941 6.90601 7.06054 7.39558 7.52623 7.55906 7.67823 7.83070 8.19680 8.74748 9.40946 9.57440 10.87353 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041259 B = 0.003650 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.477893 B = 7669.279732 C = 7807.042370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.186 4.186 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.150 4.150 7 C 0.112 3.888 8 N -0.506 5.506 9 C 0.038 3.962 10 C -0.128 4.128 11 C 0.257 3.743 12 O -0.579 6.579 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.052 3.948 22 S 0.090 5.910 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.377 0.623 37 H 0.266 0.734 38 H 0.046 0.954 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 -9.178 5.524 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.304 4.304 4 C -0.165 4.165 5 C -0.159 4.159 6 C -0.268 4.268 7 C -0.018 4.018 8 N -0.230 5.230 9 C -0.090 4.090 10 C -0.167 4.167 11 C 0.217 3.783 12 O -0.387 6.387 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.075 4.075 22 S 0.354 5.646 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.371 -9.526 4.779 17.892 hybrid contribution 0.578 1.027 -0.356 1.231 sum -13.793 -8.499 4.423 16.794 Atomic orbital electron populations 1.21783 0.94610 1.01655 1.02394 1.20048 0.95905 0.90070 1.02975 1.24425 1.09323 1.00667 0.95970 1.20016 1.03241 0.94323 0.98886 1.20016 1.02844 0.96978 0.96034 1.24383 1.06602 0.99536 0.96295 1.20743 0.90226 0.91367 0.99459 1.64829 1.07738 1.09252 1.41225 1.22939 0.97892 0.97119 0.91034 1.22936 0.95114 0.99369 0.99308 1.19350 0.84099 0.90711 0.84136 1.86144 1.24404 1.91278 1.36889 1.21630 1.09210 1.03503 1.23204 0.92080 1.25003 0.96034 0.95740 0.96398 1.69750 1.15759 1.26274 1.41482 0.86436 0.78604 0.82037 0.80291 1.19707 1.20795 1.20942 1.23239 0.96381 0.88854 0.99022 1.84232 1.64795 1.05803 1.09763 0.92296 0.92395 0.92523 0.91013 0.90286 0.84859 0.84414 0.89365 0.94149 0.95563 0.91856 0.91491 0.92101 0.77404 0.92431 0.93608 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.47 6.43 -27.88 -0.18 -0.65 16 3 C -0.19 -2.28 5.76 -36.00 -0.21 -2.49 16 4 C -0.13 -1.68 10.05 -41.21 -0.41 -2.09 16 5 C -0.13 -1.80 10.05 -41.21 -0.41 -2.22 16 6 C -0.15 -2.29 5.56 -36.00 -0.20 -2.49 16 7 C 0.11 1.83 5.26 -4.97 -0.03 1.81 16 8 N -0.51 -10.10 5.26 -231.79 -1.22 -11.32 16 9 C 0.04 0.77 5.89 -2.75 -0.02 0.76 16 10 C -0.13 -3.03 5.26 -25.37 -0.13 -3.17 16 11 C 0.26 6.47 0.96 -89.82 -0.09 6.38 16 12 O -0.58 -15.47 13.09 -35.23 -0.46 -15.93 16 13 C -0.54 -14.42 8.15 -34.44 -0.28 -14.70 16 14 H 0.06 1.63 7.78 -52.49 -0.41 1.22 16 15 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 16 N -0.89 -24.00 11.02 55.43 0.61 -23.39 16 17 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.05 1.14 5.69 -1.81 -0.01 1.13 16 22 S 0.09 1.25 23.01 -107.50 -2.47 -1.23 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.09 1.32 8.11 -51.93 -0.42 0.89 16 31 H 0.04 0.65 7.81 -51.93 -0.41 0.24 16 32 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.67 7.99 -51.93 -0.41 1.25 16 35 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 36 H 0.38 10.13 7.48 45.56 0.34 10.47 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -28.05 331.38 -10.72 -38.78 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.46 Total: 9.22 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.69 Total: -16.76 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.61 Total: -34.71 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.46 Total: -15.93 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.47 Total: -1.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.05 -10.72 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.492 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds