Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47179 * 2 1 4 4 C 1.33390 * 125.20259 * 89.99564 * 3 2 1 5 5 C 1.38427 * 114.92030 * 179.75132 * 4 3 2 6 6 C 1.33390 * 114.91775 * 0.43273 * 5 4 3 7 7 C 1.50699 * 125.20389 * 179.86097 * 6 5 4 8 8 N 1.46906 * 109.47317 * 89.71425 * 7 6 5 9 9 C 1.47897 * 110.99555 * 69.87469 * 8 7 6 10 10 C 1.54000 * 107.05672 * 145.84575 * 9 8 7 11 11 C 1.54598 * 105.22213 * 358.72428 * 10 9 8 12 12 O 1.42900 * 110.72206 * 96.45416 * 11 10 9 13 13 C 1.50709 * 110.72231 * 219.73162 * 11 10 9 14 14 H 1.07997 * 119.99484 * 118.54840 * 13 11 10 15 15 C 1.37869 * 119.99916 * 298.55075 * 13 11 10 16 16 N 1.31519 * 120.00697 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99863 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47004 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47386 * 119.99630 * 17 15 13 20 20 H 1.48500 * 109.47203 * 239.99911 * 17 15 13 21 21 C 1.48533 * 111.00245 * 187.27419 * 8 7 6 22 22 S 1.75881 * 109.59642 * 359.59216 * 6 5 4 23 23 H 1.09002 * 109.47271 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47239 * 300.00322 * 1 2 3 25 25 H 1.08995 * 109.46823 * 60.00229 * 1 2 3 26 26 H 1.09000 * 109.47239 * 239.99678 * 2 1 3 27 27 H 1.09009 * 109.46941 * 119.99762 * 2 1 3 28 28 H 1.07998 * 122.54247 * 359.97438 * 4 3 2 29 29 H 1.07995 * 122.54412 * 180.27563 * 5 4 3 30 30 H 1.09004 * 109.46704 * 329.71852 * 7 6 5 31 31 H 1.08991 * 109.47304 * 209.71592 * 7 6 5 32 32 H 1.09000 * 109.91881 * 26.49521 * 9 8 7 33 33 H 1.09002 * 110.08496 * 265.28456 * 9 8 7 34 34 H 1.09002 * 110.31026 * 117.69182 * 10 9 8 35 35 H 1.09000 * 110.30915 * 239.76211 * 10 9 8 36 36 H 0.96701 * 114.00035 * 61.44787 * 12 11 10 37 37 H 0.96995 * 120.00378 * 179.97438 * 16 15 13 38 38 H 1.09003 * 110.66452 * 318.71648 * 21 8 7 39 39 H 1.08998 * 110.66933 * 81.84247 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0900 5 6 2.7478 3.4281 0.8429 6 6 2.8558 3.7475 -0.4477 7 6 3.3274 5.0772 -0.9771 8 7 4.7861 5.0467 -1.1486 9 6 5.1697 4.1580 -2.2669 10 6 6.4132 4.7783 -2.9306 11 6 6.6862 6.0807 -2.1437 12 8 7.6760 5.8645 -1.1359 13 6 7.1050 7.1888 -3.0755 14 1 6.5062 8.0842 -3.1530 15 6 8.2524 7.0593 -3.8287 16 7 8.9819 5.9691 -3.7340 17 14 8.7719 8.4331 -4.9831 18 1 7.7884 9.5431 -4.9056 19 1 10.1136 8.9314 -4.5874 20 1 8.8261 7.9167 -6.3743 21 6 5.3088 6.3913 -1.5021 22 16 2.3709 2.3766 -1.4372 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.1518 1.7604 2.0895 29 1 2.9971 4.1186 1.6349 30 1 3.0609 5.8643 -0.2716 31 1 2.8527 5.2747 -1.9382 32 1 4.3552 4.0967 -2.9886 33 1 5.4073 3.1632 -1.8899 34 1 7.2634 4.1012 -2.8483 35 1 6.2102 5.0042 -3.9774 36 1 8.5361 5.5896 -1.4819 37 1 9.7890 5.8779 -4.2642 38 1 4.6529 6.8822 -2.2211 39 1 5.4295 7.0042 -0.6089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592521982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = -39.801923 kcal Electronic energy + Delta-G solvation = -19789.887775 eV Core-core repulsion = 16822.840312 eV Total energy + Delta-G solvation = -2967.047463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20903 -38.89533 -36.71412 -34.71407 -34.17024 -32.24109 -29.92599 -29.45410 -27.08380 -25.83631 -24.09128 -23.05325 -21.90832 -21.43653 -19.51272 -18.99677 -17.86671 -17.14669 -16.87495 -16.25154 -16.09055 -15.75032 -15.20091 -14.93339 -14.77686 -14.44166 -14.12380 -13.82296 -13.71763 -13.27549 -13.20086 -13.04934 -12.73899 -12.67583 -12.65100 -12.50067 -12.26409 -12.18242 -12.13368 -11.86215 -11.64806 -11.47706 -11.08550 -10.61190 -10.11399 -9.47445 -9.34629 -9.22963 -8.21521 -6.37677 0.08744 0.71364 1.12480 1.39152 1.42471 1.52980 1.86951 2.38154 3.02923 3.21819 3.74774 3.87636 3.94966 4.06103 4.20328 4.24130 4.29756 4.40188 4.45022 4.56421 4.61475 4.70321 4.76308 4.83100 4.90106 5.02079 5.07077 5.08169 5.18800 5.34294 5.35453 5.44187 5.46061 5.55238 5.67585 5.73921 5.87714 6.12479 6.23504 6.68807 7.34290 7.47075 8.84194 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041259 B = 0.003650 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.477893 B = 7669.279732 C = 7807.042370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.174 4.174 4 C -0.146 4.146 5 C -0.124 4.124 6 C -0.180 4.180 7 C 0.115 3.885 8 N -0.513 5.513 9 C 0.052 3.948 10 C -0.119 4.119 11 C 0.240 3.760 12 O -0.589 6.589 13 C -0.561 4.561 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.911 5.911 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.060 3.940 22 S 0.070 5.930 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.371 0.629 37 H 0.268 0.732 38 H 0.053 0.947 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.453 -9.845 6.046 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.292 4.292 4 C -0.175 4.175 5 C -0.155 4.155 6 C -0.297 4.297 7 C -0.014 4.014 8 N -0.238 5.238 9 C -0.076 4.076 10 C -0.158 4.158 11 C 0.200 3.800 12 O -0.396 6.396 13 C -0.599 4.599 14 H 0.075 0.925 15 C -0.172 4.172 16 N -0.551 5.551 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.067 4.067 22 S 0.334 5.666 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.219 0.781 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.691 -10.197 5.307 19.451 hybrid contribution 0.955 1.166 -0.468 1.578 sum -14.736 -9.031 4.839 17.948 Atomic orbital electron populations 1.21761 0.93458 1.02822 1.02062 1.20205 0.96815 0.88260 1.03945 1.24846 1.07856 1.01631 0.94826 1.20265 1.03312 0.93761 1.00184 1.20286 1.01661 0.97786 0.95805 1.24276 1.08871 0.99540 0.96995 1.20743 0.87694 0.92889 1.00106 1.64777 1.10521 1.07840 1.40628 1.22745 0.96669 0.96852 0.91305 1.22733 0.95928 0.98633 0.98538 1.19620 0.85088 0.91006 0.84332 1.86135 1.24464 1.91328 1.37672 1.21889 1.09845 1.03995 1.24181 0.92531 1.25714 0.95992 0.97822 0.97673 1.69839 1.15891 1.27457 1.41879 0.85474 0.78088 0.79404 0.78415 1.19404 1.20522 1.20434 1.23078 0.94823 0.89997 0.98809 1.84260 1.65212 1.06119 1.11041 0.90426 0.92239 0.93356 0.90742 0.88583 0.82369 0.83707 0.88048 0.93841 0.94258 0.91790 0.93542 0.93664 0.78072 0.92242 0.92933 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.05 -0.85 6.43 29.85 0.19 -0.66 16 3 C -0.17 -3.89 5.76 24.59 0.14 -3.75 16 4 C -0.15 -3.28 10.05 21.22 0.21 -3.07 16 5 C -0.12 -3.28 10.05 21.22 0.21 -3.06 16 6 C -0.18 -5.24 5.56 24.59 0.14 -5.10 16 7 C 0.12 3.64 5.26 85.56 0.45 4.09 16 8 N -0.51 -20.17 5.26 -887.23 -4.66 -24.83 16 9 C 0.05 2.12 5.89 86.45 0.51 2.63 16 10 C -0.12 -5.74 5.26 31.48 0.17 -5.58 16 11 C 0.24 12.20 0.96 -10.28 -0.01 12.19 16 12 O -0.59 -32.02 13.09 -148.98 -1.95 -33.98 16 13 C -0.56 -30.42 8.15 25.60 0.21 -30.21 16 14 H 0.06 3.04 7.78 -2.91 -0.02 3.01 16 15 C 0.03 1.53 5.28 84.65 0.45 1.97 16 16 N -0.91 -49.54 11.02 21.45 0.24 -49.30 16 17 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.06 2.63 5.69 86.70 0.49 3.12 16 22 S 0.07 1.85 23.01 -56.49 -1.30 0.55 16 23 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.25 8.14 -2.38 -0.02 1.24 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.10 2.89 8.11 -2.39 -0.02 2.87 16 31 H 0.04 1.35 7.81 -2.39 -0.02 1.33 16 32 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 2.37 7.99 -2.39 -0.02 2.35 16 35 H 0.04 2.26 7.84 -2.39 -0.02 2.24 16 36 H 0.37 20.53 7.48 -74.06 -0.55 19.98 16 37 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 39 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.24 331.38 -1.30 -60.55 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.48 Total: 31.23 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.87 Total: -28.64 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -4.43 Total: -74.13 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.95 Total: -33.98 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.30 Total: 0.55 kcal Total: -59.24 -1.30 -60.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.744 kcal (2) G-P(sol) polarization free energy of solvation -59.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds