Wall clock time and date at job start Tue Mar 31 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86811 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47344 * 300.00412 * 3 2 1 6 6 H 1.48503 * 109.46574 * 60.00390 * 3 2 1 7 7 C 1.39937 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99893 * 197.89959 * 7 2 1 9 9 C 1.41434 * 120.00071 * 17.90739 * 7 2 1 10 10 C 1.40786 * 120.17592 * 204.46851 * 9 7 2 11 11 C 1.37712 * 120.03770 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41373 * 0.29812 * 11 10 9 13 13 C 1.39873 * 120.35453 * 359.44505 * 12 11 10 14 14 C 1.47894 * 120.02108 * 180.25621 * 13 12 11 15 15 O 1.21554 * 119.99662 * 180.27317 * 14 13 12 16 16 N 1.34771 * 119.99889 * 0.27362 * 14 13 12 17 17 C 1.46505 * 119.99667 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47197 * 324.99542 * 17 16 14 19 19 C 1.52994 * 109.47156 * 85.00135 * 17 16 14 20 20 O 1.42900 * 109.47146 * 64.99722 * 19 17 16 21 21 C 1.53004 * 109.47132 * 205.00110 * 17 16 14 22 22 C 1.53001 * 109.46928 * 64.99775 * 21 17 16 23 23 F 1.39899 * 109.47065 * 179.97438 * 22 21 17 24 24 C 1.39035 * 119.95215 * 0.53184 * 13 12 11 25 25 H 0.96999 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.98056 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.78624 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.82052 * 179.70447 * 12 11 10 29 29 H 0.96991 * 120.00246 * 0.02562 * 16 14 13 30 30 H 1.08999 * 109.47303 * 185.00017 * 19 17 16 31 31 H 1.08999 * 109.47051 * 304.99901 * 19 17 16 32 32 H 0.96701 * 113.99776 * 179.97438 * 20 19 17 33 33 H 1.08997 * 109.47144 * 184.99848 * 21 17 16 34 34 H 1.09002 * 109.46676 * 305.00286 * 21 17 16 35 35 H 1.08997 * 109.47268 * 299.99998 * 22 21 17 36 36 H 1.09002 * 109.47024 * 60.00724 * 22 21 17 37 37 H 1.08007 * 120.20323 * 179.77355 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2869 9 6 1.3522 -2.4069 -0.3777 10 6 1.8260 -3.6499 0.0833 11 6 1.1850 -4.8117 -0.2853 12 6 0.0776 -4.7682 -1.1137 13 6 -0.4107 -3.5422 -1.5773 14 6 -1.5982 -3.5039 -2.4579 15 8 -2.0192 -2.4385 -2.8644 16 7 -2.2136 -4.6502 -2.8095 17 6 -3.3904 -4.6122 -3.6814 18 1 -3.9779 -3.7211 -3.4601 19 6 -2.9409 -4.5768 -5.1434 20 8 -2.2710 -5.7972 -5.4655 21 6 -4.2442 -5.8587 -3.4404 22 6 -4.7963 -5.8306 -2.0137 23 9 -5.5775 -6.9701 -1.7935 24 6 0.2246 -2.3600 -1.2142 25 1 -0.4850 0.8400 0.0004 26 1 2.6926 -3.6923 0.7263 27 1 1.5517 -5.7631 0.0711 28 1 -0.4149 -5.6856 -1.4006 29 1 -1.8779 -5.5002 -2.4848 30 1 -3.8116 -4.4590 -5.7884 31 1 -2.2610 -3.7383 -5.2942 32 1 -1.9581 -5.8448 -6.3792 33 1 -5.0715 -5.8752 -4.1499 34 1 -3.6317 -6.7502 -3.5754 35 1 -3.9690 -5.8141 -1.3042 36 1 -5.4088 -4.9391 -1.8787 37 1 -0.1468 -1.4112 -1.5727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593861925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:25 Heat of formation + Delta-G solvation = -133.542072 kcal Electronic energy + Delta-G solvation = -21686.862146 eV Core-core repulsion = 18149.536629 eV Total energy + Delta-G solvation = -3537.325517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.63361 -39.56142 -37.59068 -36.71208 -34.92194 -33.76607 -31.83520 -29.98641 -29.44889 -28.13798 -25.32756 -23.67586 -22.77178 -21.09145 -20.57580 -19.66336 -17.87314 -17.43285 -16.54874 -16.22766 -15.83505 -15.56803 -15.23173 -14.83860 -14.70169 -14.48798 -13.97779 -13.64072 -13.34218 -13.27777 -12.79373 -12.51941 -12.42960 -12.14303 -11.67570 -11.43224 -11.18894 -11.09347 -10.96118 -10.80788 -10.73617 -10.50469 -10.10401 -10.02656 -9.70427 -9.23966 -9.05701 -8.73976 -7.65360 -7.53848 -6.82423 -4.43216 2.17456 2.78876 3.06500 3.11166 3.13444 3.56980 3.80422 3.90310 4.24496 4.32820 4.60906 4.72200 4.73691 5.05108 5.26107 5.29445 5.40385 5.52506 5.58395 5.62656 5.74013 5.90988 6.05568 6.11404 6.26987 6.70194 6.80334 6.96872 7.00050 7.19282 7.36247 7.53892 7.68400 7.74094 7.90644 8.06373 8.16842 8.48783 8.78335 8.81374 8.89517 10.12395 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.004213 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.772568 B = 6644.338765 C = 6891.736263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.216 4.216 13 C -0.129 4.129 14 C 0.566 3.434 15 O -0.549 6.549 16 N -0.727 5.727 17 C 0.152 3.848 18 H 0.101 0.899 19 C 0.064 3.936 20 O -0.568 6.568 21 C -0.152 4.152 22 C 0.058 3.942 23 F -0.221 7.221 24 C -0.093 4.093 25 H 0.284 0.716 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.402 0.598 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.377 0.623 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -7.728 -7.152 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.236 4.236 13 C -0.132 4.132 14 C 0.357 3.643 15 O -0.427 6.427 16 N -0.381 5.381 17 C 0.046 3.954 18 H 0.119 0.881 19 C -0.015 4.015 20 O -0.373 6.373 21 C -0.191 4.191 22 C 0.003 3.997 23 F -0.203 7.203 24 C -0.113 4.113 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.238 0.762 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.052 -6.943 -6.790 12.002 hybrid contribution 0.548 0.422 -0.405 0.802 sum -6.504 -6.521 -7.195 11.687 Atomic orbital electron populations 1.69796 1.07596 1.29657 1.33784 1.25961 0.94754 1.01549 0.92265 0.86247 0.80925 0.80831 0.78688 1.18315 1.19565 1.19896 1.19624 0.98273 0.91070 1.39926 0.90038 1.17602 0.91203 0.92457 0.89179 1.21111 1.03430 0.92779 1.05739 1.20444 0.96087 0.96757 0.98324 1.20355 1.01411 0.94634 1.07243 1.19452 0.96573 0.95295 1.01856 1.18886 0.83244 0.82795 0.79407 1.90690 1.66096 1.29910 1.56021 1.45986 1.30643 1.09934 1.51535 1.20854 0.87263 0.98726 0.88566 0.88091 1.22632 0.96071 0.87016 0.95742 1.86462 1.78148 1.38519 1.34161 1.22322 1.00392 0.99715 0.96623 1.22062 0.94569 0.85156 0.97942 1.92749 1.77281 1.54169 1.96058 1.21636 0.96478 0.96454 0.96761 0.90511 0.88605 0.88877 0.89196 0.76209 0.93125 0.92555 0.77703 0.89679 0.89330 0.90242 0.90667 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.57 10.96 55.55 0.61 -19.96 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.01 9.05 -37.73 -0.34 -12.35 16 8 H 0.08 2.03 7.91 -52.48 -0.42 1.61 16 9 C 0.10 2.58 5.57 -106.87 -0.60 1.98 16 10 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 11 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 12 C -0.22 -4.52 9.55 -38.92 -0.37 -4.89 16 13 C -0.13 -2.99 5.87 -105.04 -0.62 -3.60 16 14 C 0.57 11.89 7.74 -12.31 -0.10 11.80 16 15 O -0.55 -13.08 16.00 5.32 0.09 -12.99 16 16 N -0.73 -11.56 4.43 -54.73 -0.24 -11.81 16 17 C 0.15 1.98 2.37 -67.93 -0.16 1.81 16 18 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 19 C 0.06 0.77 6.85 37.15 0.25 1.02 16 20 O -0.57 -6.44 12.83 -35.23 -0.45 -6.89 16 21 C -0.15 -1.63 4.93 -26.73 -0.13 -1.76 16 22 C 0.06 0.65 7.44 37.16 0.28 0.93 16 23 F -0.22 -2.86 17.36 2.25 0.04 -2.82 16 24 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 25 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 26 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 27 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.09 1.57 6.38 -52.49 -0.33 1.24 16 29 H 0.40 5.88 6.62 -40.82 -0.27 5.61 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.38 2.69 9.12 45.56 0.42 3.11 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.00 7.73 -51.93 -0.40 0.59 16 35 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.13 3.80 5.74 -52.48 -0.30 3.50 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -30.32 320.80 -6.90 -37.22 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -3.77 Total: 12.76 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.96 Total: -13.91 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.37 Total: -31.77 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.37 Total: -19.88 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.32 -6.90 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593861925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.324 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds