Wall clock time and date at job start Tue Mar 31 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86811 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47344 * 300.00412 * 3 2 1 6 6 H 1.48503 * 109.46574 * 60.00390 * 3 2 1 7 7 C 1.39937 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99893 * 197.89959 * 7 2 1 9 9 C 1.41434 * 120.00071 * 17.90739 * 7 2 1 10 10 C 1.40786 * 120.17592 * 204.46851 * 9 7 2 11 11 C 1.37712 * 120.03770 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41373 * 0.29812 * 11 10 9 13 13 C 1.39873 * 120.35453 * 359.44505 * 12 11 10 14 14 C 1.47894 * 120.02108 * 180.25621 * 13 12 11 15 15 O 1.21554 * 119.99662 * 180.27317 * 14 13 12 16 16 N 1.34771 * 119.99889 * 0.27362 * 14 13 12 17 17 C 1.46505 * 119.99667 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47197 * 324.99542 * 17 16 14 19 19 C 1.52994 * 109.47156 * 85.00135 * 17 16 14 20 20 O 1.42900 * 109.47146 * 64.99722 * 19 17 16 21 21 C 1.53004 * 109.47132 * 205.00110 * 17 16 14 22 22 C 1.53001 * 109.46928 * 64.99775 * 21 17 16 23 23 F 1.39899 * 109.47065 * 179.97438 * 22 21 17 24 24 C 1.39035 * 119.95215 * 0.53184 * 13 12 11 25 25 H 0.96999 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.98056 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.78624 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.82052 * 179.70447 * 12 11 10 29 29 H 0.96991 * 120.00246 * 0.02562 * 16 14 13 30 30 H 1.08999 * 109.47303 * 185.00017 * 19 17 16 31 31 H 1.08999 * 109.47051 * 304.99901 * 19 17 16 32 32 H 0.96701 * 113.99776 * 179.97438 * 20 19 17 33 33 H 1.08997 * 109.47144 * 184.99848 * 21 17 16 34 34 H 1.09002 * 109.46676 * 305.00286 * 21 17 16 35 35 H 1.08997 * 109.47268 * 299.99998 * 22 21 17 36 36 H 1.09002 * 109.47024 * 60.00724 * 22 21 17 37 37 H 1.08007 * 120.20323 * 179.77355 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2869 9 6 1.3522 -2.4069 -0.3777 10 6 1.8260 -3.6499 0.0833 11 6 1.1850 -4.8117 -0.2853 12 6 0.0776 -4.7682 -1.1137 13 6 -0.4107 -3.5422 -1.5773 14 6 -1.5982 -3.5039 -2.4579 15 8 -2.0192 -2.4385 -2.8644 16 7 -2.2136 -4.6502 -2.8095 17 6 -3.3904 -4.6122 -3.6814 18 1 -3.9779 -3.7211 -3.4601 19 6 -2.9409 -4.5768 -5.1434 20 8 -2.2710 -5.7972 -5.4655 21 6 -4.2442 -5.8587 -3.4404 22 6 -4.7963 -5.8306 -2.0137 23 9 -5.5775 -6.9701 -1.7935 24 6 0.2246 -2.3600 -1.2142 25 1 -0.4850 0.8400 0.0004 26 1 2.6926 -3.6923 0.7263 27 1 1.5517 -5.7631 0.0711 28 1 -0.4149 -5.6856 -1.4006 29 1 -1.8779 -5.5002 -2.4848 30 1 -3.8116 -4.4590 -5.7884 31 1 -2.2610 -3.7383 -5.2942 32 1 -1.9581 -5.8448 -6.3792 33 1 -5.0715 -5.8752 -4.1499 34 1 -3.6317 -6.7502 -3.5754 35 1 -3.9690 -5.8141 -1.3042 36 1 -5.4088 -4.9391 -1.8787 37 1 -0.1468 -1.4112 -1.5727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593861925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:25 Heat of formation + Delta-G solvation = -154.644346 kcal Electronic energy + Delta-G solvation = -21687.777209 eV Core-core repulsion = 18149.536629 eV Total energy + Delta-G solvation = -3538.240580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.59197 -41.08880 -39.09766 -38.10988 -36.07654 -35.58807 -33.22103 -31.62989 -31.25227 -29.19678 -27.19473 -24.91868 -24.07789 -22.84255 -21.82689 -21.25575 -19.56299 -18.45382 -18.02567 -17.42652 -16.99077 -16.83560 -16.70813 -16.44186 -15.94874 -15.90510 -15.31781 -15.07538 -14.94050 -14.52267 -14.32577 -14.24057 -13.54329 -13.48776 -13.17688 -12.94924 -12.79372 -12.55498 -12.38805 -12.16486 -11.92531 -11.89937 -11.68591 -11.50027 -11.08116 -11.01997 -10.72128 -10.13977 -9.47361 -9.38733 -8.67232 -6.38405 0.38035 1.00301 1.36653 1.46404 1.52779 2.09688 2.19258 2.21086 2.78229 3.36153 3.37724 3.69778 3.78151 3.87434 4.03069 4.17760 4.28667 4.39048 4.42849 4.53757 4.58682 4.62382 4.76255 4.85408 4.95448 5.09024 5.17414 5.19483 5.31424 5.49048 5.53302 5.86454 5.92947 6.05177 6.28522 6.50851 6.67861 6.86296 6.87980 6.94242 7.30482 8.29904 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.004213 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.772568 B = 6644.338765 C = 6891.736263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.083 0.917 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.139 4.139 14 C 0.564 3.436 15 O -0.586 6.586 16 N -0.705 5.705 17 C 0.145 3.855 18 H 0.092 0.908 19 C 0.070 3.930 20 O -0.577 6.577 21 C -0.137 4.137 22 C 0.055 3.945 23 F -0.229 7.229 24 C -0.131 4.131 25 H 0.287 0.713 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.411 0.589 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.396 0.604 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -9.867 -7.768 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.527 4.527 8 H 0.101 0.899 9 C 0.065 3.935 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.142 4.142 14 C 0.354 3.646 15 O -0.467 6.467 16 N -0.357 5.357 17 C 0.040 3.960 18 H 0.110 0.890 19 C -0.009 4.009 20 O -0.385 6.385 21 C -0.175 4.175 22 C 0.000 4.000 23 F -0.210 7.210 24 C -0.152 4.152 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.248 0.752 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.245 0.755 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.356 -9.150 -7.425 13.891 hybrid contribution 0.581 0.849 -0.267 1.062 sum -6.776 -8.301 -7.692 13.190 Atomic orbital electron populations 1.69888 1.09230 1.30573 1.35372 1.26834 0.95394 1.04886 0.91276 0.85166 0.79661 0.76141 0.78817 1.17517 1.19464 1.18838 1.19892 0.98601 0.92286 1.41960 0.89899 1.17946 0.91835 0.93844 0.89877 1.21408 1.03885 0.92832 1.05640 1.20916 0.95464 0.97683 0.97364 1.20837 1.00632 0.95142 1.05146 1.19793 0.97149 0.95342 1.01894 1.18660 0.83037 0.83603 0.79276 1.90669 1.67034 1.31597 1.57412 1.45809 1.30622 1.08565 1.50749 1.21115 0.86242 0.99782 0.88855 0.88965 1.22485 0.96709 0.86358 0.95321 1.86403 1.78282 1.37750 1.36103 1.22211 1.00476 0.98091 0.96730 1.22128 0.94523 0.85115 0.98219 1.92736 1.77504 1.54680 1.96126 1.21448 0.98243 0.96483 0.99016 0.90265 0.87444 0.84547 0.84917 0.75157 0.89875 0.95444 0.75484 0.87427 0.89154 0.90805 0.89852 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.73 10.96 21.82 0.24 -45.49 16 2 C 0.03 1.62 5.14 85.25 0.44 2.05 16 3 Si 0.98 39.41 29.60 68.60 2.03 41.44 16 4 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.50 -27.14 9.05 23.47 0.21 -26.92 16 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 10 C -0.22 -10.21 9.78 22.77 0.22 -9.99 16 11 C -0.10 -3.83 10.01 22.18 0.22 -3.61 16 12 C -0.20 -7.77 9.55 22.70 0.22 -7.55 16 13 C -0.14 -6.47 5.87 -20.13 -0.12 -6.59 16 14 C 0.56 23.83 7.74 86.80 0.67 24.50 16 15 O -0.59 -28.92 16.00 -3.89 -0.06 -28.98 16 16 N -0.70 -21.27 4.43 -445.36 -1.97 -23.24 16 17 C 0.14 3.49 2.37 44.99 0.11 3.60 16 18 H 0.09 2.45 7.58 -2.39 -0.02 2.43 16 19 C 0.07 1.53 6.85 71.98 0.49 2.02 16 20 O -0.58 -11.37 12.83 -148.98 -1.91 -13.28 16 21 C -0.14 -2.51 4.93 30.60 0.15 -2.36 16 22 C 0.06 1.11 7.44 71.98 0.54 1.65 16 23 F -0.23 -5.38 17.36 44.97 0.78 -4.60 16 24 C -0.13 -7.24 8.24 23.01 0.19 -7.05 16 25 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 26 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 27 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.13 4.03 6.38 -2.91 -0.02 4.01 16 29 H 0.41 10.79 6.62 -92.72 -0.61 10.18 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.40 4.50 9.12 -74.06 -0.68 3.83 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.69 7.73 -2.39 -0.02 1.67 16 35 H 0.07 1.57 7.75 -2.39 -0.02 1.55 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 6.13 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -69.47 320.80 2.15 -67.32 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.18 Total: 33.56 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.22 Total: -26.73 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -1.73 Total: -68.73 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.97 Total: -42.26 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -69.47 2.15 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593861925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.324 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds