Wall clock time and date at job start Tue Mar 31 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 120.00341 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00158 * 3 2 1 5 5 H 1.48498 * 109.46657 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47148 * 119.99604 * 3 2 1 7 7 C 1.39945 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99753 * 197.88621 * 7 2 1 9 9 C 1.41431 * 119.99947 * 17.87803 * 7 2 1 10 10 C 1.40785 * 120.17728 * 204.44725 * 9 7 2 11 11 C 1.37712 * 120.04370 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40620 * 359.66824 * 11 10 9 13 13 C 1.39874 * 120.35803 * 0.61057 * 12 11 10 14 14 C 1.47892 * 120.02615 * 179.69321 * 13 12 11 15 15 O 1.21539 * 120.00336 * 179.72560 * 14 13 12 16 16 N 1.34780 * 119.99388 * 359.72538 * 14 13 12 17 17 C 1.46506 * 119.99397 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.47083 * 34.99975 * 17 16 14 19 19 C 1.53001 * 109.46977 * 274.99684 * 17 16 14 20 20 O 1.42897 * 109.47448 * 295.00489 * 19 17 16 21 21 C 1.52995 * 109.47032 * 154.99997 * 17 16 14 22 22 C 1.52993 * 109.47160 * 294.99884 * 21 17 16 23 23 F 1.39907 * 109.47410 * 179.97438 * 22 21 17 24 24 C 1.39028 * 119.95175 * 359.41658 * 13 12 11 25 25 H 0.96997 * 119.99784 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.97859 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.79771 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.81858 * 180.30344 * 12 11 10 29 29 H 0.96992 * 120.00139 * 0.02562 * 16 14 13 30 30 H 1.08998 * 109.47361 * 174.99912 * 19 17 16 31 31 H 1.09008 * 109.46960 * 55.00116 * 19 17 16 32 32 H 0.96694 * 114.00480 * 180.02562 * 20 19 17 33 33 H 1.09001 * 109.47126 * 54.99872 * 21 17 16 34 34 H 1.09000 * 109.47320 * 174.99654 * 21 17 16 35 35 H 1.09001 * 109.47091 * 300.00009 * 22 21 17 36 36 H 1.09000 * 109.47400 * 60.00202 * 22 21 17 37 37 H 1.08002 * 120.20480 * 180.25016 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3520 -2.4070 -0.3771 10 6 1.8262 -3.6500 0.0836 11 6 1.1857 -4.8120 -0.2852 12 6 0.0705 -4.7677 -1.1032 13 6 -0.4116 -3.5425 -1.5754 14 6 -1.6001 -3.5042 -2.4547 15 8 -2.0217 -2.4390 -2.8608 16 7 -2.2157 -4.6507 -2.8059 17 6 -3.3927 -4.6128 -3.6775 18 1 -3.2820 -3.8065 -4.4026 19 6 -4.6452 -4.3708 -2.8327 20 8 -4.8551 -5.4842 -1.9621 21 6 -3.5246 -5.9470 -4.4145 22 6 -2.3311 -6.1309 -5.3538 23 9 -2.4514 -7.3513 -6.0274 24 6 0.2237 -2.3603 -1.2128 25 1 -0.4850 0.8400 0.0004 26 1 2.6929 -3.6923 0.7267 27 1 1.5526 -5.7633 0.0709 28 1 -0.4274 -5.6844 -1.3825 29 1 -1.8795 -5.5007 -2.4815 30 1 -5.5084 -4.2540 -3.4880 31 1 -4.5141 -3.4655 -2.2397 32 1 -5.6342 -5.3993 -1.3957 33 1 -3.5460 -6.7615 -3.6904 34 1 -4.4476 -5.9521 -4.9943 35 1 -2.3098 -5.3164 -6.0779 36 1 -1.4082 -6.1259 -4.7740 37 1 -0.1475 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593861926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:27 Heat of formation + Delta-G solvation = -154.614406 kcal Electronic energy + Delta-G solvation = -21688.098165 eV Core-core repulsion = 18149.858883 eV Total energy + Delta-G solvation = -3538.239282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.58083 -41.08911 -39.09634 -38.11328 -36.07966 -35.58696 -33.21882 -31.62733 -31.25059 -29.19591 -27.19171 -24.91804 -24.07268 -22.84109 -21.82638 -21.25434 -19.56028 -18.46011 -18.01777 -17.42377 -17.00131 -16.82339 -16.70019 -16.44333 -15.94808 -15.89672 -15.31890 -15.07378 -14.94946 -14.49550 -14.33764 -14.23994 -13.55390 -13.47437 -13.16800 -12.94239 -12.80533 -12.53735 -12.37982 -12.19115 -11.91853 -11.90471 -11.67678 -11.51207 -11.06691 -11.02351 -10.72329 -10.13937 -9.47377 -9.38496 -8.66851 -6.38314 0.38328 1.01407 1.36513 1.47935 1.50747 2.09381 2.18984 2.21898 2.78566 3.36046 3.37978 3.69851 3.78470 3.88387 4.03216 4.18556 4.28715 4.38837 4.42833 4.53701 4.59030 4.62532 4.76442 4.85619 4.95660 5.08880 5.17947 5.19736 5.31423 5.49152 5.53423 5.86502 5.93088 6.05190 6.28729 6.50735 6.67911 6.84875 6.87882 6.94459 7.30563 8.29829 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.004240 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.658887 B = 6601.906578 C = 6994.822182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.139 4.139 14 C 0.564 3.436 15 O -0.585 6.585 16 N -0.705 5.705 17 C 0.145 3.855 18 H 0.094 0.906 19 C 0.069 3.931 20 O -0.578 6.578 21 C -0.137 4.137 22 C 0.056 3.944 23 F -0.229 7.229 24 C -0.131 4.131 25 H 0.287 0.713 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.411 0.589 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.395 0.605 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.828 -9.689 -6.166 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.529 4.529 8 H 0.102 0.898 9 C 0.065 3.935 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.142 4.142 14 C 0.354 3.646 15 O -0.467 6.467 16 N -0.358 5.358 17 C 0.041 3.959 18 H 0.112 0.888 19 C -0.010 4.010 20 O -0.386 6.386 21 C -0.176 4.176 22 C 0.001 3.999 23 F -0.211 7.211 24 C -0.152 4.152 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.248 0.752 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.245 0.755 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.830 -9.052 -6.760 13.746 hybrid contribution -0.069 0.919 0.639 1.121 sum -7.899 -8.134 -6.121 12.885 Atomic orbital electron populations 1.69882 1.09234 1.30679 1.35238 1.26837 0.95391 1.04882 0.91257 0.85250 0.78734 0.75492 0.80272 1.18491 1.19598 1.17689 1.19852 0.98627 0.92294 1.42080 0.89845 1.17939 0.91836 0.93829 0.89870 1.21408 1.03963 0.92814 1.05618 1.20916 0.95388 0.97680 0.97442 1.20836 1.00407 0.95178 1.05376 1.19792 0.97127 0.95353 1.01912 1.18659 0.82964 0.83624 0.79323 1.90665 1.67598 1.31518 1.56906 1.45815 1.30227 1.08623 1.51094 1.21111 0.84011 0.99271 0.91516 0.88775 1.22507 0.97401 0.88251 0.92852 1.86395 1.52831 1.42830 1.56505 1.22208 0.99750 0.96762 0.98830 1.22128 1.00137 0.82280 0.95378 1.92739 1.97501 1.48225 1.82614 1.21450 0.98273 0.96470 0.99002 0.90268 0.87449 0.84557 0.84933 0.75163 0.89837 0.95692 0.75522 0.89268 0.87469 0.89694 0.90670 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.76 10.96 21.83 0.24 -45.52 16 2 C 0.03 1.64 5.14 85.26 0.44 2.07 16 3 Si 0.98 39.37 29.60 68.60 2.03 41.40 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.50 -27.18 9.05 23.47 0.21 -26.96 16 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 10 C -0.22 -10.23 9.78 22.77 0.22 -10.01 16 11 C -0.10 -3.84 10.01 22.18 0.22 -3.61 16 12 C -0.20 -7.79 9.55 22.70 0.22 -7.58 16 13 C -0.14 -6.47 5.87 -20.14 -0.12 -6.59 16 14 C 0.56 23.83 7.74 86.80 0.67 24.51 16 15 O -0.59 -28.89 16.00 -3.84 -0.06 -28.95 16 16 N -0.70 -21.28 4.43 -445.36 -1.97 -23.25 16 17 C 0.15 3.51 2.37 44.99 0.11 3.62 16 18 H 0.09 2.45 7.58 -2.39 -0.02 2.44 16 19 C 0.07 1.55 6.85 71.98 0.49 2.05 16 20 O -0.58 -11.95 12.83 -148.98 -1.91 -13.86 16 21 C -0.14 -2.49 4.93 30.59 0.15 -2.34 16 22 C 0.06 1.08 7.44 71.98 0.54 1.61 16 23 F -0.23 -5.24 17.36 44.97 0.78 -4.46 16 24 C -0.13 -7.25 8.24 23.01 0.19 -7.06 16 25 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 26 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 27 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.13 4.03 6.38 -2.91 -0.02 4.01 16 29 H 0.41 10.80 6.62 -92.71 -0.61 10.18 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.40 4.97 9.12 -74.06 -0.68 4.29 16 33 H 0.09 1.67 7.73 -2.39 -0.02 1.65 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.51 7.75 -2.39 -0.02 1.49 16 37 H 0.10 6.14 5.74 -2.91 -0.02 6.13 16 Total: -1.00 -69.41 320.80 2.15 -67.26 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.18 Total: 34.12 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 3.22 Total: -26.75 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.73 Total: -68.76 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.97 Total: -42.81 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -69.41 2.15 -67.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593861926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.357 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds