Wall clock time and date at job start Tue Mar 31 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00013 * 2 1 4 4 N 1.46904 * 109.47253 * 124.20005 * 3 2 1 5 5 C 1.46897 * 111.00178 * 196.16405 * 4 3 2 6 6 C 1.50707 * 109.47172 * 66.04520 * 5 4 3 7 7 H 1.07997 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99757 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00501 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99601 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47156 * 59.99989 * 10 8 6 12 12 H 1.48493 * 109.46879 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47256 * 299.99998 * 10 8 6 14 14 C 1.46896 * 110.99858 * 72.20590 * 4 3 2 15 15 C 1.50698 * 109.47366 * 199.98873 * 14 4 3 16 16 O 1.34036 * 126.78255 * 264.23144 * 15 14 4 17 17 N 1.20918 * 111.56930 * 179.78543 * 16 15 14 18 18 C 1.30180 * 111.60348 * 0.49273 * 17 16 15 19 19 C 1.50700 * 126.80119 * 179.72339 * 18 17 16 20 20 C 1.35458 * 126.77067 * 84.54203 * 15 14 4 21 21 N 1.48017 * 128.00934 * 0.02562 * 20 15 14 22 22 O 1.21806 * 119.99816 * 94.69829 * 21 20 15 23 23 O 1.21801 * 120.00308 * 274.69794 * 21 20 15 24 24 H 1.08003 * 119.99725 * 180.02562 * 1 2 3 25 25 H 1.07990 * 120.00141 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99750 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47067 * 4.20512 * 3 2 1 28 28 H 1.08996 * 109.47462 * 244.20141 * 3 2 1 29 29 H 1.08997 * 109.46930 * 186.04591 * 5 4 3 30 30 H 1.08995 * 109.47055 * 306.04643 * 5 4 3 31 31 H 0.96996 * 120.00218 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47519 * 320.00037 * 14 4 3 33 33 H 1.09004 * 109.46969 * 79.99355 * 14 4 3 34 34 H 1.09005 * 109.46862 * 269.96731 * 19 18 17 35 35 H 1.08998 * 109.47618 * 29.96855 * 19 18 17 36 36 H 1.08998 * 109.47374 * 149.97660 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9826 1.3399 1.1455 5 6 3.4457 2.7091 1.4075 6 6 2.2822 3.5559 1.8554 7 1 1.2973 3.1205 1.9368 8 6 2.4751 4.8866 2.1601 9 7 3.6744 5.4169 2.0605 10 14 1.0331 5.9360 2.7160 11 1 0.4542 5.3638 3.9580 12 1 1.5012 7.3201 2.9807 13 1 -0.0023 5.9581 1.6517 14 6 4.1176 0.4309 0.9376 15 6 4.7553 0.1116 2.2651 16 8 5.8187 0.7178 2.8112 17 7 6.0959 0.2439 3.8885 18 6 5.2893 -0.7270 4.2070 19 6 5.3271 -1.5564 5.4647 20 6 4.3704 -0.8487 3.1395 21 7 3.2480 -1.8046 3.0076 22 8 3.4467 -2.9189 2.5576 23 8 2.1256 -1.4770 3.3489 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3576 2.1322 0.0754 28 1 2.6325 1.3961 -0.9252 29 1 4.2051 2.6925 2.1891 30 1 3.8713 3.1293 0.4963 31 1 3.8101 6.3530 2.2752 32 1 3.7654 -0.4899 0.4727 33 1 4.8511 0.9084 0.2877 34 1 5.9618 -2.4282 5.3059 35 1 5.7291 -0.9583 6.2824 36 1 4.3177 -1.8827 5.7152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595500191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:59 Heat of formation + Delta-G solvation = 91.384996 kcal Electronic energy + Delta-G solvation = -22604.081152 eV Core-core repulsion = 19096.429166 eV Total energy + Delta-G solvation = -3507.651986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.43123 -41.88145 -37.64095 -36.40449 -35.24952 -33.66933 -33.09565 -31.83268 -29.16097 -28.25188 -27.17865 -26.15416 -24.12829 -22.66032 -21.38801 -20.60426 -19.43167 -19.10730 -18.75987 -17.87753 -17.21310 -16.77370 -16.41650 -15.40923 -14.97659 -14.40709 -14.19447 -13.97715 -13.68794 -13.50187 -13.09306 -12.56540 -12.45377 -12.17491 -11.80642 -11.61339 -11.54346 -11.30785 -11.16063 -11.03037 -10.87635 -10.83425 -10.54215 -10.42111 -10.11938 -9.80540 -9.41010 -9.03832 -8.56342 -7.68997 -6.14441 -4.17156 0.55112 0.92623 1.21361 1.59644 2.62902 2.80726 3.28006 3.32546 3.35786 3.75551 3.88775 4.32305 4.42211 4.68490 4.85364 5.00540 5.15387 5.18832 5.23834 5.27471 5.32352 5.48142 5.55506 5.63856 5.88666 6.19112 6.30440 6.33569 6.89095 6.96724 7.04335 7.16494 7.54604 7.67955 7.72830 7.80968 7.92826 8.26394 8.89330 9.47888 10.96220 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.006532 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.846350 B = 4285.420299 C = 5263.670245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.088 3.912 4 N -0.524 5.524 5 C 0.189 3.811 6 C -0.514 4.514 7 H 0.067 0.933 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.899 3.101 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.107 3.893 15 C 0.099 3.901 16 O 0.125 5.875 17 N -0.338 5.338 18 C 0.068 3.932 19 C -0.083 4.083 20 C -0.154 4.154 21 N 0.059 4.941 22 O -0.150 6.150 23 O -0.095 6.095 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.001 0.999 31 H 0.264 0.736 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -13.008 -0.486 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C -0.039 4.039 4 N -0.250 5.250 5 C 0.065 3.935 6 C -0.552 4.552 7 H 0.085 0.915 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.727 3.273 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.201 1.201 14 C -0.023 4.023 15 C 0.032 3.968 16 O 0.067 5.933 17 N -0.046 5.046 18 C -0.094 4.094 19 C -0.140 4.140 20 C -0.241 4.241 21 N 0.591 4.409 22 O -0.367 6.367 23 O -0.327 6.327 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.236 -11.888 0.573 12.334 hybrid contribution -1.070 0.294 -0.447 1.196 sum 2.166 -11.594 0.126 11.795 Atomic orbital electron populations 1.23737 0.95812 1.01539 1.00882 1.22873 0.96214 0.97792 0.99600 1.21220 0.95676 0.96357 0.90608 1.62208 1.12513 1.11532 1.38740 1.19909 0.96795 0.80766 0.96010 1.21026 0.94922 0.93746 1.45498 0.91527 1.24970 0.95993 0.97896 0.95447 1.69933 1.21152 1.13707 1.48597 0.86533 0.82289 0.79080 0.79421 1.20045 1.21281 1.20078 1.20882 0.94688 1.00560 0.86124 1.24376 0.87236 0.88202 0.97030 1.85044 1.37272 1.46964 1.24011 1.74021 1.21999 1.10575 0.97963 1.23181 0.91589 0.96772 0.97892 1.20341 1.04265 0.98341 0.91075 1.21332 0.98517 1.02841 1.01416 1.42035 1.00570 0.99970 0.98310 1.94545 1.90441 1.05825 1.45886 1.94651 1.06822 1.82216 1.49046 0.88870 0.88377 0.88805 0.87887 0.94545 0.95085 0.98139 0.92662 0.88141 0.90903 0.89023 0.88880 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 14.32 29.01 0.42 -2.19 16 2 C -0.15 -2.26 9.26 -36.03 -0.33 -2.60 16 3 C 0.09 1.56 5.25 -4.98 -0.03 1.53 16 4 N -0.52 -10.42 4.36 -238.97 -1.04 -11.46 16 5 C 0.19 4.61 4.54 -4.97 -0.02 4.58 16 6 C -0.51 -13.79 8.28 -34.44 -0.29 -14.07 16 7 H 0.07 1.78 7.26 -52.49 -0.38 1.40 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 10 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.11 1.75 5.39 -4.98 -0.03 1.72 16 15 C 0.10 1.69 6.32 -35.30 -0.22 1.47 16 16 O 0.12 2.22 10.93 17.19 0.19 2.40 16 17 N -0.34 -5.75 12.07 33.42 0.40 -5.34 16 18 C 0.07 1.04 7.33 -82.10 -0.60 0.44 16 19 C -0.08 -0.92 10.47 36.01 0.38 -0.54 16 20 C -0.15 -2.57 6.98 -79.75 -0.56 -3.12 16 21 N 0.06 0.98 4.45 34.06 0.15 1.13 16 22 O -0.15 -2.39 19.26 -29.46 -0.57 -2.96 16 23 O -0.10 -1.72 19.26 -29.46 -0.57 -2.29 16 24 H 0.09 1.16 8.06 -52.48 -0.42 0.74 16 25 H 0.10 1.41 7.84 -52.49 -0.41 1.00 16 26 H 0.09 1.37 7.08 -52.49 -0.37 1.00 16 27 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 28 H 0.04 0.59 8.05 -51.93 -0.42 0.18 16 29 H 0.03 0.82 7.22 -51.93 -0.38 0.45 16 30 H 0.00 0.02 8.12 -51.93 -0.42 -0.40 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.10 1.44 6.56 -51.93 -0.34 1.10 16 33 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -29.51 325.24 -6.48 -35.99 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.28 Total: -2.27 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.38 Total: -11.25 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.25 Total: -40.72 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: -0.95 Total: -2.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.51 -6.48 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595500191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.374 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds