Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47218 * 2 1 4 4 C 1.50694 * 109.46969 * 239.99549 * 2 1 3 5 5 H 1.08001 * 119.99977 * 240.00132 * 4 2 1 6 6 C 1.37874 * 120.00041 * 60.00527 * 4 2 1 7 7 N 1.31513 * 120.00281 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47456 * 59.99868 * 8 6 4 10 10 H 1.48504 * 109.46822 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47116 * 299.99922 * 8 6 4 12 12 C 1.53004 * 109.46679 * 119.99875 * 2 1 3 13 13 N 1.46502 * 109.46853 * 299.99616 * 12 2 1 14 14 C 1.39193 * 119.99533 * 180.02562 * 13 12 2 15 15 C 1.39645 * 120.83685 * 0.02562 * 14 13 12 16 16 C 1.37752 * 119.19397 * 179.97438 * 15 14 13 17 17 N 1.32080 * 120.91210 * 359.97438 * 16 15 14 18 18 C 1.32376 * 121.83166 * 359.70733 * 17 16 15 19 19 O 1.35685 * 119.64535 * 180.31593 * 18 17 16 20 20 C 1.38608 * 120.70637 * 0.57999 * 18 17 16 21 21 N 1.48029 * 120.48636 * 179.70986 * 20 18 17 22 22 O 1.21803 * 119.99705 * 269.72309 * 21 20 18 23 23 O 1.21799 * 120.00092 * 89.45206 * 21 20 18 24 24 H 1.09009 * 109.47233 * 300.00723 * 1 2 3 25 25 H 1.09004 * 109.47046 * 59.99834 * 1 2 3 26 26 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47040 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46981 * 299.99121 * 3 2 1 29 29 H 1.08993 * 109.47613 * 59.99930 * 3 2 1 30 30 H 0.96996 * 120.00343 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46859 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.47525 * 59.99679 * 12 2 1 33 33 H 0.97000 * 120.00321 * 0.02562 * 13 12 2 34 34 H 1.07998 * 120.39880 * 0.02562 * 15 14 13 35 35 H 1.07994 * 119.54263 * 179.97438 * 16 15 14 36 36 H 0.96701 * 113.99901 * 270.26197 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5201 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1193 -4.0075 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8882 -0.5057 3.7096 15 6 2.6907 -1.6389 3.8581 16 6 3.0034 -2.0795 5.1253 17 7 2.5557 -1.4453 6.1939 18 6 1.7978 -0.3642 6.0977 19 8 1.3675 0.2562 7.2251 20 6 1.4347 0.1376 4.8578 21 7 0.5817 1.3432 4.7560 22 8 -0.6303 1.2299 4.7148 23 8 1.0917 2.4486 4.7183 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6768 1.9563 0.8899 30 1 0.7083 1.1607 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6765 -1.7489 1.2494 33 1 0.9937 0.7580 2.3564 34 1 3.0622 -2.1630 2.9900 35 1 3.6232 -2.9555 5.2466 36 1 0.5212 -0.0737 7.5570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596265590.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = -7.879355 kcal Electronic energy + Delta-G solvation = -22395.501830 eV Core-core repulsion = 18883.545419 eV Total energy + Delta-G solvation = -3511.956411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19889 -40.53098 -38.27040 -37.04988 -36.36244 -34.87099 -32.14041 -31.14199 -29.97909 -26.54949 -26.07099 -25.92401 -25.17603 -22.98171 -22.69126 -19.49560 -19.35130 -18.96233 -18.67022 -18.09066 -17.03531 -16.22858 -16.04522 -15.55306 -15.03575 -14.68293 -14.48647 -14.37180 -13.41210 -13.12728 -12.92314 -12.40774 -12.23182 -11.95376 -11.56243 -11.38501 -11.24184 -11.18678 -11.01275 -10.87358 -10.84951 -10.51058 -10.35878 -9.94218 -9.82487 -9.63635 -9.57220 -9.02803 -8.55775 -8.13500 -6.18182 -4.31248 0.40172 0.61172 1.01464 1.45031 2.87034 3.17323 3.18250 3.24640 3.26454 3.39704 4.23489 4.25269 4.46669 4.70117 4.86085 5.08472 5.29417 5.44087 5.68497 5.82599 5.95903 6.13971 6.31594 6.46417 6.63349 6.67950 6.78194 6.86515 6.96856 7.14613 7.32870 7.34401 7.51041 7.52462 7.68455 7.80443 7.92954 8.16796 8.68030 9.35943 10.83260 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.004570 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.314862 B = 6125.316061 C = 6834.812023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 C -0.134 4.134 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.122 3.878 13 N -0.697 5.697 14 C 0.317 3.683 15 C -0.250 4.250 16 C 0.185 3.815 17 N -0.534 5.534 18 C 0.409 3.591 19 O -0.478 6.478 20 C -0.196 4.196 21 N 0.034 4.966 22 O -0.148 6.148 23 O -0.135 6.135 24 H 0.004 0.996 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.004 0.996 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.407 0.593 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -4.847 12.355 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C -0.192 4.192 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.000 4.000 13 N -0.318 5.318 14 C 0.193 3.807 15 C -0.276 4.276 16 C 0.033 3.967 17 N -0.258 5.258 18 C 0.226 3.774 19 O -0.286 6.286 20 C -0.289 4.289 21 N 0.563 4.437 22 O -0.368 6.368 23 O -0.359 6.359 24 H 0.023 0.977 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.176 0.824 35 H 0.193 0.807 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.482 -5.413 12.763 14.084 hybrid contribution -0.741 0.284 -1.599 1.785 sum 1.742 -5.130 11.164 12.409 Atomic orbital electron populations 1.21869 0.97440 0.99378 1.00447 1.18362 0.93045 0.92894 0.89915 1.21868 0.98719 0.98125 1.00452 1.20815 1.32407 1.12419 0.89634 0.92369 1.24890 0.94628 0.94832 0.98997 1.69782 1.35896 1.22442 1.23748 0.86579 0.79207 0.79718 0.82044 1.20212 1.21163 1.20201 1.22178 0.98451 0.96192 0.83182 1.45734 1.52034 1.31361 1.02691 1.17702 0.88400 0.90258 0.84295 1.21752 1.06133 0.98958 1.00717 1.22527 0.92002 0.96054 0.86086 1.67599 1.15650 1.08607 1.33986 1.18303 0.89373 0.87066 0.82619 1.84783 1.43693 1.59545 1.40573 1.21542 1.13906 0.97416 0.96013 1.43162 1.01028 1.02017 0.97457 1.94547 0.96553 1.93478 1.52266 1.94570 1.77431 1.12480 1.51458 0.97681 0.89151 0.95171 0.95158 0.89151 0.97664 0.92617 0.91726 0.91724 0.75592 0.82361 0.80742 0.72939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 4 C -0.51 -12.41 8.01 -34.44 -0.28 -12.69 16 5 H 0.06 1.37 7.74 -52.49 -0.41 0.96 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -22.71 9.35 55.43 0.52 -22.19 16 8 Si 0.90 19.59 29.54 -169.99 -5.02 14.57 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.12 2.16 3.78 -4.04 -0.02 2.14 16 13 N -0.70 -11.69 5.12 -58.48 -0.30 -11.99 16 14 C 0.32 4.76 6.69 -83.63 -0.56 4.20 16 15 C -0.25 -2.99 9.38 -39.23 -0.37 -3.36 16 16 C 0.19 1.96 11.17 -17.62 -0.20 1.76 16 17 N -0.53 -6.90 10.39 -13.43 -0.14 -7.03 16 18 C 0.41 5.71 7.74 -17.18 -0.13 5.58 16 19 O -0.48 -5.94 13.32 -18.76 -0.25 -6.19 16 20 C -0.20 -3.04 6.22 -79.45 -0.49 -3.53 16 21 N 0.03 0.58 3.36 34.21 0.11 0.69 16 22 O -0.15 -2.54 19.26 -29.46 -0.57 -3.11 16 23 O -0.14 -2.46 19.26 -29.46 -0.57 -3.03 16 24 H 0.00 0.09 6.86 -51.92 -0.36 -0.27 16 25 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.06 1.11 7.99 -51.93 -0.41 0.69 16 32 H 0.06 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.41 7.39 5.52 -40.82 -0.23 7.17 16 34 H 0.16 1.65 6.89 -52.49 -0.36 1.29 16 35 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.41 3.05 9.06 45.56 0.41 3.46 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -27.86 309.40 -6.32 -34.18 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.16 Total: 7.83 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.61 Total: -8.40 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.19 Total: -40.52 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.38 Total: -12.32 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.86 -6.32 -34.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265590.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.301 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds