Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47218 * 2 1 4 4 C 1.50694 * 109.46969 * 239.99549 * 2 1 3 5 5 H 1.08001 * 119.99977 * 240.00132 * 4 2 1 6 6 C 1.37874 * 120.00041 * 60.00527 * 4 2 1 7 7 N 1.31513 * 120.00281 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47456 * 59.99868 * 8 6 4 10 10 H 1.48504 * 109.46822 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47116 * 299.99922 * 8 6 4 12 12 C 1.53004 * 109.46679 * 119.99875 * 2 1 3 13 13 N 1.46502 * 109.46853 * 299.99616 * 12 2 1 14 14 C 1.39193 * 119.99533 * 180.02562 * 13 12 2 15 15 C 1.39645 * 120.83685 * 0.02562 * 14 13 12 16 16 C 1.37752 * 119.19397 * 179.97438 * 15 14 13 17 17 N 1.32080 * 120.91210 * 359.97438 * 16 15 14 18 18 C 1.32376 * 121.83166 * 359.70733 * 17 16 15 19 19 O 1.35685 * 119.64535 * 180.31593 * 18 17 16 20 20 C 1.38608 * 120.70637 * 0.57999 * 18 17 16 21 21 N 1.48029 * 120.48636 * 179.70986 * 20 18 17 22 22 O 1.21803 * 119.99705 * 269.72309 * 21 20 18 23 23 O 1.21799 * 120.00092 * 89.45206 * 21 20 18 24 24 H 1.09009 * 109.47233 * 300.00723 * 1 2 3 25 25 H 1.09004 * 109.47046 * 59.99834 * 1 2 3 26 26 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47040 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46981 * 299.99121 * 3 2 1 29 29 H 1.08993 * 109.47613 * 59.99930 * 3 2 1 30 30 H 0.96996 * 120.00343 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46859 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.47525 * 59.99679 * 12 2 1 33 33 H 0.97000 * 120.00321 * 0.02562 * 13 12 2 34 34 H 1.07998 * 120.39880 * 0.02562 * 15 14 13 35 35 H 1.07994 * 119.54263 * 179.97438 * 16 15 14 36 36 H 0.96701 * 113.99901 * 270.26197 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5201 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1193 -4.0075 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8882 -0.5057 3.7096 15 6 2.6907 -1.6389 3.8581 16 6 3.0034 -2.0795 5.1253 17 7 2.5557 -1.4453 6.1939 18 6 1.7978 -0.3642 6.0977 19 8 1.3675 0.2562 7.2251 20 6 1.4347 0.1376 4.8578 21 7 0.5817 1.3432 4.7560 22 8 -0.6303 1.2299 4.7148 23 8 1.0917 2.4486 4.7183 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6768 1.9563 0.8899 30 1 0.7083 1.1607 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6765 -1.7489 1.2494 33 1 0.9937 0.7580 2.3564 34 1 3.0622 -2.1630 2.9900 35 1 3.6232 -2.9555 5.2466 36 1 0.5212 -0.0737 7.5570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596265590.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = -27.575302 kcal Electronic energy + Delta-G solvation = -22396.355911 eV Core-core repulsion = 18883.545419 eV Total energy + Delta-G solvation = -3512.810491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.44294 -41.60885 -39.49286 -38.26604 -37.69032 -36.27351 -33.68255 -32.40798 -31.18507 -27.77627 -27.71799 -27.62061 -26.80441 -24.10839 -23.84081 -20.89628 -20.65875 -20.08008 -19.95906 -19.38262 -18.23563 -17.63868 -17.43030 -16.84433 -16.36287 -16.02492 -15.74671 -15.50520 -14.82933 -14.54334 -14.28333 -13.84651 -13.50274 -13.20986 -13.15073 -12.93277 -12.88918 -12.65154 -12.48790 -12.45634 -12.38436 -12.17228 -12.06985 -11.51365 -11.32460 -10.96387 -10.80750 -10.59461 -10.42775 -9.30944 -8.05003 -6.22950 -0.74138 -0.59010 -0.03336 0.24448 1.45869 1.47473 1.53188 1.77373 2.17252 2.37428 2.45555 3.20003 3.23051 3.44666 3.69119 3.95029 4.13383 4.35379 4.38192 4.56160 4.62282 4.78831 4.89162 4.95523 4.99522 5.05174 5.16213 5.32672 5.52791 5.62399 5.68075 5.96110 5.98659 6.14078 6.16764 6.31724 6.33779 6.55770 6.83456 7.46605 8.94393 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.004570 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.314862 B = 6125.316061 C = 6834.812023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.293 1.293 11 H -0.273 1.273 12 C 0.138 3.862 13 N -0.710 5.710 14 C 0.302 3.698 15 C -0.244 4.244 16 C 0.201 3.799 17 N -0.537 5.537 18 C 0.409 3.591 19 O -0.487 6.487 20 C -0.213 4.213 21 N 0.038 4.962 22 O -0.145 6.145 23 O -0.171 6.171 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.396 0.604 34 H 0.179 0.821 35 H 0.224 0.776 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -7.133 13.506 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.198 1.198 12 C 0.016 3.984 13 N -0.332 5.332 14 C 0.181 3.819 15 C -0.270 4.270 16 C 0.049 3.951 17 N -0.261 5.261 18 C 0.226 3.774 19 O -0.298 6.298 20 C -0.305 4.305 21 N 0.565 4.435 22 O -0.370 6.370 23 O -0.388 6.388 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.197 0.803 35 H 0.240 0.760 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 3.751 -7.684 13.956 16.367 hybrid contribution -1.139 0.925 -1.837 2.351 sum 2.612 -6.759 12.119 14.120 Atomic orbital electron populations 1.21710 0.97996 0.98992 0.99411 1.18357 0.92619 0.92646 0.91387 1.21717 0.98430 0.98643 0.99382 1.21194 1.31897 1.12471 0.90534 0.91757 1.25569 0.95056 0.95478 1.01533 1.69938 1.37062 1.23646 1.23729 0.85723 0.78721 0.78770 0.79038 1.19704 1.21852 1.19794 1.21832 0.98713 0.95976 0.81893 1.45521 1.53051 1.31469 1.03118 1.18007 0.89328 0.91310 0.83261 1.22083 1.04982 0.97694 1.02204 1.23322 0.90647 0.96322 0.84791 1.67775 1.15336 1.08131 1.34882 1.18443 0.89376 0.87195 0.82425 1.84737 1.45092 1.59998 1.39997 1.21791 1.14693 0.96883 0.97089 1.43433 1.01058 1.02412 0.96625 1.94518 0.97281 1.93598 1.51610 1.94564 1.77459 1.13648 1.53142 0.96739 0.92089 0.95093 0.95269 0.92047 0.96830 0.93163 0.90882 0.90618 0.76828 0.80347 0.75987 0.70637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 2 C 0.05 2.17 0.50 -52.93 -0.03 2.14 16 3 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 4 C -0.52 -24.81 8.01 25.60 0.21 -24.61 16 5 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 6 C 0.02 1.17 5.15 84.65 0.44 1.60 16 7 N -0.91 -47.56 9.35 21.45 0.20 -47.36 16 8 Si 0.95 39.93 29.54 68.60 2.03 41.96 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.14 4.64 3.78 86.38 0.33 4.96 16 13 N -0.71 -22.94 5.12 -338.95 -1.73 -24.67 16 14 C 0.30 8.47 6.69 38.54 0.26 8.73 16 15 C -0.24 -4.96 9.38 22.49 0.21 -4.75 16 16 C 0.20 3.34 11.17 84.54 0.94 4.28 16 17 N -0.54 -12.05 10.39 -309.19 -3.21 -15.26 16 18 C 0.41 10.58 7.74 84.70 0.66 11.23 16 19 O -0.49 -11.33 13.32 -90.04 -1.20 -12.53 16 20 C -0.21 -6.30 6.22 36.69 0.23 -6.07 16 21 N 0.04 1.29 3.36 -45.69 -0.15 1.14 16 22 O -0.15 -4.97 19.26 18.88 0.36 -4.61 16 23 O -0.17 -6.32 19.26 18.89 0.36 -5.96 16 24 H 0.01 0.57 6.86 -2.38 -0.02 0.56 16 25 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 29 H 0.01 0.54 6.86 -2.39 -0.02 0.53 16 30 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 31 H 0.07 2.32 7.99 -2.39 -0.02 2.30 16 32 H 0.08 2.36 8.00 -2.39 -0.02 2.34 16 33 H 0.40 14.31 5.52 -92.71 -0.51 13.80 16 34 H 0.18 2.91 6.89 -2.91 -0.02 2.89 16 35 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.43 5.68 9.06 -74.06 -0.67 5.01 16 Total: -1.00 -60.30 309.40 1.02 -59.28 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.04 Total: 20.32 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.40 Total: -12.32 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -4.90 Total: -86.15 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.47 Total: -23.09 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -60.30 1.02 -59.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265590.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.708 kcal (2) G-P(sol) polarization free energy of solvation -60.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds