Wall clock time and date at job start Tue Mar 31 2020 05:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47042 * 2 1 4 4 N 1.30173 * 126.80839 * 270.16180 * 3 2 1 5 5 O 1.20913 * 111.61060 * 180.25216 * 4 3 2 6 6 C 1.34048 * 111.56644 * 359.75121 * 5 4 3 7 7 C 1.50699 * 126.78084 * 179.97438 * 6 5 4 8 8 C 1.35455 * 106.44458 * 359.97438 * 6 5 4 9 9 C 1.50691 * 128.00672 * 179.97438 * 8 6 5 10 10 S 1.81408 * 109.47213 * 90.02525 * 9 8 6 11 11 C 1.81392 * 103.00033 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.50705 * 115.55013 * 297.82508 * 12 11 10 14 14 H 1.07998 * 119.99773 * 95.15356 * 13 12 11 15 15 C 1.37877 * 119.99810 * 274.88017 * 13 12 11 16 16 N 1.31515 * 119.99919 * 6.56582 * 15 13 12 17 17 Si 1.86794 * 119.99692 * 186.57166 * 15 13 12 18 18 H 1.48503 * 109.47493 * 90.00104 * 17 15 13 19 19 H 1.48507 * 109.47003 * 209.99621 * 17 15 13 20 20 H 1.48504 * 109.47373 * 329.99664 * 17 15 13 21 21 C 1.53001 * 117.49942 * 83.49065 * 12 11 10 22 22 C 1.53001 * 117.50182 * 152.15097 * 12 11 10 23 23 H 1.09000 * 109.46880 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46900 * 299.99835 * 1 2 3 25 25 H 1.09000 * 109.46815 * 59.99711 * 1 2 3 26 26 H 1.09003 * 109.47365 * 240.00415 * 2 1 3 27 27 H 1.08999 * 109.47546 * 120.00391 * 2 1 3 28 28 H 1.09000 * 109.47154 * 270.00688 * 7 6 5 29 29 H 1.09006 * 109.46793 * 29.99946 * 7 6 5 30 30 H 1.09001 * 109.46980 * 149.99843 * 7 6 5 31 31 H 1.09001 * 109.47625 * 330.02295 * 9 8 6 32 32 H 1.09000 * 109.47156 * 210.02154 * 9 8 6 33 33 H 1.08998 * 109.47687 * 60.00144 * 11 10 9 34 34 H 1.09003 * 109.47466 * 299.99497 * 11 10 9 35 35 H 0.97004 * 119.99783 * 184.58326 * 16 15 13 36 36 H 1.09003 * 117.50287 * 215.00334 * 21 12 11 37 37 H 1.09001 * 117.49614 * 0.02754 * 21 12 11 38 38 H 1.08993 * 117.49862 * 359.97438 * 22 12 11 39 39 H 1.09004 * 117.49936 * 144.97194 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1571 -1.0422 5 8 2.6839 3.2553 -0.7253 6 6 2.7357 3.3947 0.6069 7 6 3.1760 4.6175 1.3698 8 6 2.3141 2.2194 1.1322 9 6 2.1828 1.8470 2.5864 10 16 0.5203 2.2755 3.1726 11 6 0.5559 1.7617 4.9118 12 6 -0.7971 2.0618 5.5601 13 6 -1.1906 3.5160 5.5997 14 1 -1.8202 3.9263 4.8241 15 6 -0.7513 4.3212 6.6291 16 7 0.1134 3.8566 7.5043 17 14 -1.3847 6.0720 6.7807 18 1 -2.6072 6.0850 7.6237 19 1 -0.3418 6.9230 7.4081 20 1 -1.7085 6.5999 5.4310 21 6 -1.9138 1.0327 5.3733 22 6 -1.2289 1.1809 6.7342 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.2494 4.5649 1.5523 29 1 2.9501 5.5103 0.7867 30 1 2.6472 4.6617 2.3218 31 1 2.9253 2.3918 3.1696 32 1 2.3441 0.7754 2.7030 33 1 1.3390 2.3089 5.4365 34 1 0.7581 0.6922 4.9708 35 1 0.3719 4.3991 8.2657 36 1 -2.9330 1.4074 5.2790 37 1 -1.6843 0.1416 4.7889 38 1 -0.5493 0.3873 7.0445 39 1 -1.7972 1.6533 7.5355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596343421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:51 Heat of formation + Delta-G solvation = 62.376551 kcal Electronic energy + Delta-G solvation = -19744.583450 eV Core-core repulsion = 16781.966778 eV Total energy + Delta-G solvation = -2962.616672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.81261 -36.59656 -35.84068 -33.91587 -31.95886 -31.27962 -29.22755 -27.71589 -26.84817 -25.31475 -24.25196 -21.52752 -21.14415 -19.85072 -19.20879 -17.55858 -16.91501 -16.20711 -15.18799 -14.80304 -14.63713 -14.46935 -13.93458 -13.66938 -13.59925 -13.33969 -13.21747 -12.80120 -12.60929 -12.55753 -12.19231 -11.88131 -11.51388 -11.45263 -11.27308 -11.04487 -10.87991 -10.70454 -10.51225 -10.26745 -9.84742 -9.66012 -9.46820 -8.86160 -8.77152 -8.45973 -8.03748 -6.83723 -6.07132 -4.11857 1.43937 1.99595 2.82036 3.19882 3.28693 3.35929 3.40464 3.47970 4.20749 4.40290 4.51539 4.82393 4.99163 5.17116 5.22499 5.31818 5.34755 5.40997 5.45056 5.53161 5.62458 5.68164 5.83185 5.88835 5.93747 5.99265 6.12028 6.17098 6.20671 6.36865 6.37631 6.49530 6.70579 6.77995 7.03446 7.36759 7.45364 7.86587 8.37254 8.37449 8.89963 9.54325 11.02105 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.005225 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.005080 B = 5357.060617 C = 6303.178951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.042 4.042 3 C 0.037 3.963 4 N -0.371 5.371 5 O 0.092 5.908 6 C -0.016 4.016 7 C -0.077 4.077 8 C -0.175 4.175 9 C -0.027 4.027 10 S -0.225 6.225 11 C -0.030 4.030 12 C 0.056 3.944 13 C -0.483 4.483 14 H 0.062 0.938 15 C 0.073 3.927 16 N -0.882 5.882 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.205 4.205 22 C -0.149 4.149 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 -4.449 -9.983 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 C -0.123 4.123 4 N -0.078 5.078 5 O 0.029 5.971 6 C -0.082 4.082 7 C -0.135 4.135 8 C -0.180 4.180 9 C -0.175 4.175 10 S 0.005 5.995 11 C -0.179 4.179 12 C 0.054 3.946 13 C -0.521 4.521 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.196 1.196 21 C -0.243 4.243 22 C -0.189 4.189 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.442 -4.093 -11.735 13.568 hybrid contribution 0.708 0.267 1.797 1.950 sum 6.150 -3.826 -9.938 12.297 Atomic orbital electron populations 1.21787 0.93450 1.02234 1.03439 1.19907 0.97000 0.87998 1.03127 1.23375 1.01438 0.99191 0.88286 1.73782 1.17314 0.92769 1.23915 1.84769 1.62824 1.27005 1.22532 1.24242 1.01930 0.98511 0.83529 1.20419 1.02198 0.91381 0.99481 1.20235 1.07858 0.94080 0.95807 1.21493 1.00787 1.03623 0.91563 1.87164 1.14414 1.84249 1.13654 1.23112 1.03891 0.99439 0.91414 1.18439 0.87773 0.92225 0.96115 1.20376 1.30714 0.91502 1.09498 0.92000 1.24922 0.94040 0.97995 0.96023 1.70007 1.30796 1.37940 1.13148 0.86669 0.78562 0.84894 0.78456 1.20726 1.21287 1.19630 1.23022 0.98714 1.01508 1.01017 1.22582 1.02965 1.01773 0.91619 0.91935 0.90544 0.92819 0.90586 0.89842 0.89658 0.89832 0.87993 0.89460 0.89895 0.89794 0.93489 0.93092 0.90312 0.91458 0.91904 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.04 -0.51 6.44 -27.88 -0.18 -0.69 16 3 C 0.04 0.55 6.58 -82.10 -0.54 0.01 16 4 N -0.37 -5.85 12.07 33.42 0.40 -5.45 16 5 O 0.09 1.37 11.20 17.16 0.19 1.57 16 6 C -0.02 -0.22 7.49 -35.30 -0.26 -0.49 16 7 C -0.08 -0.83 10.24 36.01 0.37 -0.46 16 8 C -0.17 -2.59 5.58 -104.42 -0.58 -3.17 16 9 C -0.03 -0.40 6.19 36.00 0.22 -0.18 16 10 S -0.22 -4.29 21.32 -107.50 -2.29 -6.58 16 11 C -0.03 -0.64 5.81 37.16 0.22 -0.42 16 12 C 0.06 1.32 1.37 -155.66 -0.21 1.11 16 13 C -0.48 -12.72 8.38 -34.44 -0.29 -13.01 16 14 H 0.06 1.69 7.82 -52.49 -0.41 1.27 16 15 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 16 N -0.88 -23.97 12.93 55.43 0.72 -23.25 16 17 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 22 C -0.15 -3.37 9.45 -26.69 -0.25 -3.62 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.92 7.65 -51.93 -0.40 0.52 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.23 8.05 -51.93 -0.42 0.81 16 31 H 0.09 1.24 8.08 -51.92 -0.42 0.82 16 32 H 0.08 1.13 7.65 -51.92 -0.40 0.74 16 33 H 0.08 1.93 8.14 -51.92 -0.42 1.50 16 34 H 0.05 0.90 8.11 -51.92 -0.42 0.48 16 35 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -28.41 346.40 -8.54 -36.95 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.25 Total: 1.06 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.51 Total: -25.20 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 1.12 Total: -28.70 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -2.29 Total: -6.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.41 -8.54 -36.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596343421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.327 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds