Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47042 * 2 1 4 4 N 1.30173 * 126.80839 * 270.16180 * 3 2 1 5 5 O 1.20913 * 111.61060 * 180.25216 * 4 3 2 6 6 C 1.34048 * 111.56644 * 359.75121 * 5 4 3 7 7 C 1.50699 * 126.78084 * 179.97438 * 6 5 4 8 8 C 1.35455 * 106.44458 * 359.97438 * 6 5 4 9 9 C 1.50691 * 128.00672 * 179.97438 * 8 6 5 10 10 S 1.81408 * 109.47213 * 90.02525 * 9 8 6 11 11 C 1.81392 * 103.00033 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.50705 * 115.55013 * 297.82508 * 12 11 10 14 14 H 1.07998 * 119.99773 * 95.15356 * 13 12 11 15 15 C 1.37877 * 119.99810 * 274.88017 * 13 12 11 16 16 N 1.31515 * 119.99919 * 6.56582 * 15 13 12 17 17 Si 1.86794 * 119.99692 * 186.57166 * 15 13 12 18 18 H 1.48503 * 109.47493 * 90.00104 * 17 15 13 19 19 H 1.48507 * 109.47003 * 209.99621 * 17 15 13 20 20 H 1.48504 * 109.47373 * 329.99664 * 17 15 13 21 21 C 1.53001 * 117.49942 * 83.49065 * 12 11 10 22 22 C 1.53001 * 117.50182 * 152.15097 * 12 11 10 23 23 H 1.09000 * 109.46880 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46900 * 299.99835 * 1 2 3 25 25 H 1.09000 * 109.46815 * 59.99711 * 1 2 3 26 26 H 1.09003 * 109.47365 * 240.00415 * 2 1 3 27 27 H 1.08999 * 109.47546 * 120.00391 * 2 1 3 28 28 H 1.09000 * 109.47154 * 270.00688 * 7 6 5 29 29 H 1.09006 * 109.46793 * 29.99946 * 7 6 5 30 30 H 1.09001 * 109.46980 * 149.99843 * 7 6 5 31 31 H 1.09001 * 109.47625 * 330.02295 * 9 8 6 32 32 H 1.09000 * 109.47156 * 210.02154 * 9 8 6 33 33 H 1.08998 * 109.47687 * 60.00144 * 11 10 9 34 34 H 1.09003 * 109.47466 * 299.99497 * 11 10 9 35 35 H 0.97004 * 119.99783 * 184.58326 * 16 15 13 36 36 H 1.09003 * 117.50287 * 215.00334 * 21 12 11 37 37 H 1.09001 * 117.49614 * 0.02754 * 21 12 11 38 38 H 1.08993 * 117.49862 * 359.97438 * 22 12 11 39 39 H 1.09004 * 117.49936 * 144.97194 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1571 -1.0422 5 8 2.6839 3.2553 -0.7253 6 6 2.7357 3.3947 0.6069 7 6 3.1760 4.6175 1.3698 8 6 2.3141 2.2194 1.1322 9 6 2.1828 1.8470 2.5864 10 16 0.5203 2.2755 3.1726 11 6 0.5559 1.7617 4.9118 12 6 -0.7971 2.0618 5.5601 13 6 -1.1906 3.5160 5.5997 14 1 -1.8202 3.9263 4.8241 15 6 -0.7513 4.3212 6.6291 16 7 0.1134 3.8566 7.5043 17 14 -1.3847 6.0720 6.7807 18 1 -2.6072 6.0850 7.6237 19 1 -0.3418 6.9230 7.4081 20 1 -1.7085 6.5999 5.4310 21 6 -1.9138 1.0327 5.3733 22 6 -1.2289 1.1809 6.7342 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.2494 4.5649 1.5523 29 1 2.9501 5.5103 0.7867 30 1 2.6472 4.6617 2.3218 31 1 2.9253 2.3918 3.1696 32 1 2.3441 0.7754 2.7030 33 1 1.3390 2.3089 5.4365 34 1 0.7581 0.6922 4.9708 35 1 0.3719 4.3991 8.2657 36 1 -2.9330 1.4074 5.2790 37 1 -1.6843 0.1416 4.7889 38 1 -0.5493 0.3873 7.0445 39 1 -1.7972 1.6533 7.5355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596343421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = 49.909383 kcal Electronic energy + Delta-G solvation = -19745.124067 eV Core-core repulsion = 16781.966778 eV Total energy + Delta-G solvation = -2963.157289 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.93858 -38.38315 -36.91928 -34.96276 -33.96246 -32.31294 -30.35122 -29.33878 -27.97693 -27.27738 -25.26234 -22.90259 -22.68059 -21.08722 -20.84517 -18.69494 -18.25956 -17.85589 -16.74173 -16.56171 -15.84709 -15.67954 -15.47764 -15.02754 -14.87343 -14.72012 -14.25625 -13.98655 -13.94992 -13.55694 -13.46153 -13.31085 -13.05669 -12.95821 -12.77842 -12.47452 -12.35029 -12.32278 -12.01743 -11.72502 -11.48990 -11.18132 -10.78031 -10.66359 -10.43930 -9.95748 -9.79884 -8.34130 -8.08171 -6.17172 0.26832 0.78270 1.41847 1.45002 1.53242 1.54921 2.01977 2.15078 2.46254 3.15046 3.21231 3.48117 3.56798 3.72127 3.92417 4.21256 4.24659 4.35716 4.43676 4.46725 4.47272 4.56950 4.62805 4.65374 4.67514 4.72681 4.82618 4.97476 4.99371 5.03069 5.04144 5.16074 5.21159 5.26214 5.38178 5.62511 5.65153 5.81401 6.42384 6.86295 7.26362 7.50518 8.99983 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.005225 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.005080 B = 5357.060617 C = 6303.178951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.036 3.964 4 N -0.394 5.394 5 O 0.084 5.916 6 C -0.008 4.008 7 C -0.077 4.077 8 C -0.197 4.197 9 C -0.007 4.007 10 S -0.256 6.256 11 C -0.019 4.019 12 C 0.030 3.970 13 C -0.493 4.493 14 H 0.044 0.956 15 C 0.034 3.966 16 N -0.904 5.904 17 Si 0.938 3.062 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.273 1.273 21 C -0.185 4.185 22 C -0.152 4.152 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -4.991 -10.681 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.124 4.124 4 N -0.102 5.102 5 O 0.023 5.977 6 C -0.074 4.074 7 C -0.135 4.135 8 C -0.202 4.202 9 C -0.155 4.155 10 S -0.025 6.025 11 C -0.167 4.167 12 C 0.028 3.972 13 C -0.531 4.531 14 H 0.062 0.938 15 C -0.166 4.166 16 N -0.542 5.542 17 Si 0.764 3.236 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.222 4.222 22 C -0.192 4.192 23 H 0.103 0.897 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.132 -4.623 -12.427 14.608 hybrid contribution 0.508 0.443 1.937 2.051 sum 6.640 -4.179 -10.490 13.100 Atomic orbital electron populations 1.21731 0.93586 1.03244 1.01831 1.20051 0.96739 0.86829 1.04521 1.23812 1.00484 1.00134 0.87965 1.73776 1.18586 0.93256 1.24620 1.84751 1.62996 1.26921 1.22997 1.24804 1.00262 0.99087 0.83286 1.20564 1.03599 0.90763 0.98525 1.20303 1.09436 0.94808 0.95671 1.21426 0.97733 1.04787 0.91555 1.87200 1.18335 1.84878 1.12133 1.22806 1.01485 1.00129 0.92285 1.18551 0.89746 0.91385 0.97484 1.20519 1.30284 0.93307 1.08978 0.93765 1.25474 0.94335 1.00882 0.95957 1.70081 1.31632 1.38980 1.13525 0.85867 0.78098 0.81450 0.78152 1.20516 1.20862 1.19766 1.23003 0.97762 1.01417 1.00029 1.22506 1.03356 1.01984 0.91351 0.89651 0.92713 0.93739 0.89207 0.88406 0.86989 0.88195 0.89285 0.88621 0.88165 0.92322 0.91598 0.93163 0.90819 0.88980 0.90328 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.89 71.98 0.71 -2.63 16 2 C -0.04 -0.97 6.44 29.85 0.19 -0.77 16 3 C 0.04 1.02 6.58 43.58 0.29 1.30 16 4 N -0.39 -11.98 12.07 -49.55 -0.60 -12.58 16 5 O 0.08 2.41 11.20 71.57 0.80 3.21 16 6 C -0.01 -0.21 7.49 25.04 0.19 -0.02 16 7 C -0.08 -1.52 10.24 71.24 0.73 -0.79 16 8 C -0.20 -5.52 5.58 -19.74 -0.11 -5.63 16 9 C -0.01 -0.20 6.19 71.23 0.44 0.24 16 10 S -0.26 -9.53 21.32 -56.49 -1.20 -10.73 16 11 C -0.02 -0.77 5.81 71.98 0.42 -0.36 16 12 C 0.03 1.39 1.37 -52.93 -0.07 1.32 16 13 C -0.49 -26.15 8.38 25.60 0.21 -25.94 16 14 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 15 C 0.03 1.80 5.39 84.65 0.46 2.26 16 16 N -0.90 -49.43 12.93 21.45 0.28 -49.15 16 17 Si 0.94 42.67 29.54 68.60 2.03 44.70 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.18 -7.64 9.96 30.62 0.30 -7.33 16 22 C -0.15 -6.78 9.45 30.62 0.29 -6.49 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.88 7.65 -2.39 -0.02 1.87 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.09 2.04 8.05 -2.39 -0.02 2.02 16 31 H 0.10 2.54 8.08 -2.39 -0.02 2.52 16 32 H 0.10 2.48 7.65 -2.39 -0.02 2.46 16 33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 35 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 36 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -60.44 346.40 6.37 -54.07 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.02 Total: 15.33 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.05 Total: -44.85 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.32 Total: -61.73 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.21 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.20 Total: -10.73 kcal Total: -60.44 6.37 -54.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596343421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.975 kcal (2) G-P(sol) polarization free energy of solvation -60.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds