Wall clock time and date at job start Tue Mar 31 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47055 * 275.41662 * 3 2 1 5 5 H 1.48502 * 109.47032 * 35.41629 * 3 2 1 6 6 H 1.48503 * 109.47445 * 155.41440 * 3 2 1 7 7 C 1.39942 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 341.73120 * 7 2 1 9 9 C 1.41440 * 120.00096 * 161.72894 * 7 2 1 10 10 C 1.40786 * 120.17872 * 330.18176 * 9 7 2 11 11 C 1.37714 * 120.03891 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41111 * 359.69261 * 11 10 9 13 13 C 1.39881 * 120.35630 * 0.55797 * 12 11 10 14 14 C 1.47887 * 120.02228 * 179.74106 * 13 12 11 15 15 O 1.21551 * 120.00129 * 179.72499 * 14 13 12 16 16 N 1.34779 * 119.99946 * 359.72802 * 14 13 12 17 17 C 1.46506 * 119.99911 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46921 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.46973 * 65.00513 * 18 17 16 20 20 C 1.42907 * 114.00176 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47105 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47025 * 65.00247 * 21 20 19 23 23 C 1.39027 * 119.95152 * 359.46962 * 13 12 11 24 24 H 0.96990 * 120.00294 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.97469 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.78757 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.81822 * 180.27970 * 12 11 10 28 28 H 0.96996 * 119.99985 * 359.97438 * 16 14 13 29 29 H 1.09007 * 109.46658 * 60.00395 * 17 16 14 30 30 H 1.08995 * 109.47498 * 300.00456 * 17 16 14 31 31 H 1.09005 * 109.47107 * 184.99852 * 18 17 16 32 32 H 1.08992 * 109.47372 * 305.00528 * 18 17 16 33 33 H 1.08994 * 109.46747 * 299.99763 * 20 19 18 34 34 H 1.09001 * 109.46497 * 59.99903 * 20 19 18 35 35 H 1.08999 * 109.46877 * 185.00196 * 21 20 19 36 36 H 1.08995 * 109.46957 * 304.99930 * 21 20 19 37 37 H 1.08006 * 120.20217 * 180.22812 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5089 -2.1238 0.2922 9 6 3.3689 -1.2425 -0.3846 10 6 3.8625 -0.3098 -1.3165 11 6 5.1880 -0.3426 -1.6888 12 6 6.0444 -1.2850 -1.1474 13 6 5.5709 -2.2230 -0.2241 14 6 6.4915 -3.2305 0.3456 15 8 6.0807 -4.0422 1.1517 16 7 7.7860 -3.2486 -0.0291 17 6 8.6981 -4.2463 0.5357 18 6 10.0968 -4.0492 -0.0522 19 8 10.6149 -2.7844 0.3649 20 6 11.9244 -2.5003 -0.1317 21 6 12.3754 -1.1288 0.3746 22 9 12.5077 -1.1661 1.7669 23 6 4.2354 -2.2038 0.1620 24 1 -0.4850 0.8399 0.0004 25 1 3.2012 0.4318 -1.7396 26 1 5.5622 0.3745 -2.4043 27 1 7.0831 -1.2991 -1.4428 28 1 8.1138 -2.6010 -0.6726 29 1 8.3392 -5.2462 0.2913 30 1 8.7390 -4.1296 1.6186 31 1 10.7540 -4.8447 0.2991 32 1 10.0410 -4.0779 -1.1403 33 1 12.6192 -3.2637 0.2182 34 1 11.9068 -2.4971 -1.2216 35 1 13.3350 -0.8731 -0.0748 36 1 11.6342 -0.3784 0.1000 37 1 3.8663 -2.9238 0.8774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598559491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:22 Heat of formation + Delta-G solvation = -123.007872 kcal Electronic energy + Delta-G solvation = -20982.445213 eV Core-core repulsion = 17445.576493 eV Total energy + Delta-G solvation = -3536.868720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.81819 -39.49778 -38.31176 -37.24962 -34.58507 -33.66958 -31.40977 -30.55327 -30.02971 -28.61789 -25.22628 -23.62124 -23.17178 -22.09619 -20.65441 -20.03044 -17.96298 -17.48942 -16.98090 -16.40752 -15.99421 -15.82322 -15.62158 -15.33397 -14.90163 -14.65127 -14.55187 -13.76242 -13.62035 -13.37511 -12.88650 -12.73760 -12.68042 -12.33090 -11.99171 -11.77014 -11.55903 -11.41285 -11.14011 -11.03239 -10.77051 -10.53254 -10.08352 -9.99447 -9.70950 -9.41742 -9.12986 -8.82070 -7.85506 -7.74541 -6.99577 -4.54244 1.93534 2.52756 3.06253 3.15006 3.18640 3.27524 3.53668 3.64984 3.94485 4.27386 4.44003 4.50269 4.62188 4.68403 4.85168 4.91651 5.01807 5.09657 5.32729 5.43854 5.48640 5.60475 5.81416 5.89890 6.04112 6.39728 6.64532 6.67711 6.70369 6.77707 6.99026 7.22328 7.42226 7.50866 7.76158 7.81957 8.03351 8.29278 8.54375 8.70509 8.74818 10.02684 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.003569 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.319282 B = 7843.442367 C = 8535.080678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.084 3.916 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.222 4.222 11 C -0.084 4.084 12 C -0.215 4.215 13 C -0.108 4.108 14 C 0.563 3.437 15 O -0.550 6.550 16 N -0.729 5.729 17 C 0.123 3.877 18 C 0.051 3.949 19 O -0.378 6.378 20 C 0.027 3.973 21 C 0.065 3.935 22 F -0.212 7.212 23 C -0.136 4.136 24 H 0.286 0.714 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.402 0.598 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.378 -1.863 -3.971 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.471 4.471 8 H 0.112 0.888 9 C 0.079 3.921 10 C -0.241 4.241 11 C -0.102 4.102 12 C -0.235 4.235 13 C -0.111 4.111 14 C 0.353 3.647 15 O -0.428 6.428 16 N -0.384 5.384 17 C -0.001 4.001 18 C -0.026 4.026 19 O -0.298 6.298 20 C -0.050 4.050 21 C 0.011 3.989 22 F -0.194 7.194 23 C -0.156 4.156 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.238 0.762 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.708 -2.253 -3.209 21.076 hybrid contribution 0.593 0.901 -0.542 1.207 sum 21.300 -1.353 -3.751 21.670 Atomic orbital electron populations 1.69687 1.08105 1.30383 1.34636 1.26164 0.94745 1.01750 0.90912 0.86315 0.81426 0.79734 0.78839 1.19564 1.21645 1.16665 1.19523 0.92943 0.96330 1.38317 0.88838 1.17698 0.93145 0.91066 0.90191 1.21178 0.95702 1.04273 1.02972 1.20505 0.93744 0.97367 0.98578 1.20384 0.97913 1.00669 1.04553 1.19425 0.94246 0.96986 1.00414 1.18783 0.81439 0.83941 0.80507 1.90697 1.76881 1.40811 1.34429 1.45844 1.09318 1.35722 1.47468 1.21289 0.86317 0.92985 0.99492 1.22824 0.94785 0.86037 0.98910 1.88021 1.30810 1.36912 1.74022 1.23148 0.85687 0.97284 0.98867 1.22028 1.02620 0.97637 0.76663 1.92800 1.97428 1.97643 1.31489 1.21277 0.91087 1.01948 1.01305 0.90323 0.87893 0.88315 0.88630 0.76172 0.90033 0.90712 0.91598 0.92365 0.92136 0.91438 0.89348 0.89697 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.33 13.93 55.55 0.77 -20.56 16 2 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 3 Si 0.91 20.52 24.52 -169.99 -4.17 16.35 16 4 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.24 -5.65 6.86 56.52 0.39 -5.26 16 7 C -0.44 -12.01 9.57 -37.73 -0.36 -12.37 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.08 2.08 5.10 -106.87 -0.55 1.54 16 10 C -0.22 -5.20 7.17 -38.81 -0.28 -5.48 16 11 C -0.08 -1.72 10.01 -39.72 -0.40 -2.11 16 12 C -0.22 -4.21 9.55 -38.92 -0.37 -4.58 16 13 C -0.11 -2.34 5.87 -105.04 -0.62 -2.96 16 14 C 0.56 11.32 7.77 -12.31 -0.10 11.23 16 15 O -0.55 -12.65 16.33 5.32 0.09 -12.56 16 16 N -0.73 -11.12 5.45 -61.23 -0.33 -11.45 16 17 C 0.12 1.53 6.06 -4.04 -0.02 1.50 16 18 C 0.05 0.46 6.07 37.16 0.23 0.68 16 19 O -0.38 -4.05 10.28 -35.23 -0.36 -4.41 16 20 C 0.03 0.20 6.40 37.16 0.24 0.43 16 21 C 0.07 0.47 7.93 37.16 0.29 0.76 16 22 F -0.21 -2.41 17.35 2.25 0.04 -2.37 16 23 C -0.14 -3.32 9.34 -38.44 -0.36 -3.68 16 24 H 0.29 6.84 8.30 -40.82 -0.34 6.51 16 25 H 0.10 2.39 4.72 -52.49 -0.25 2.14 16 26 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.10 1.51 6.38 -52.49 -0.33 1.18 16 28 H 0.40 5.39 6.49 -40.82 -0.26 5.12 16 29 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.12 2.88 7.64 -52.48 -0.40 2.48 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -31.43 319.53 -6.18 -37.61 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.65 Total: 5.53 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.38 Total: -12.95 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.44 Total: -32.01 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.28 Total: -16.98 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.17 Total: 16.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.43 -6.18 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598559491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.396 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds