Wall clock time and date at job start Tue Mar 31 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47055 * 275.41662 * 3 2 1 5 5 H 1.48502 * 109.47032 * 35.41629 * 3 2 1 6 6 H 1.48503 * 109.47445 * 155.41440 * 3 2 1 7 7 C 1.39942 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 341.73120 * 7 2 1 9 9 C 1.41440 * 120.00096 * 161.72894 * 7 2 1 10 10 C 1.40786 * 120.17872 * 330.18176 * 9 7 2 11 11 C 1.37714 * 120.03891 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41111 * 359.69261 * 11 10 9 13 13 C 1.39881 * 120.35630 * 0.55797 * 12 11 10 14 14 C 1.47887 * 120.02228 * 179.74106 * 13 12 11 15 15 O 1.21551 * 120.00129 * 179.72499 * 14 13 12 16 16 N 1.34779 * 119.99946 * 359.72802 * 14 13 12 17 17 C 1.46506 * 119.99911 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46921 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.46973 * 65.00513 * 18 17 16 20 20 C 1.42907 * 114.00176 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47105 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47025 * 65.00247 * 21 20 19 23 23 C 1.39027 * 119.95152 * 359.46962 * 13 12 11 24 24 H 0.96990 * 120.00294 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.97469 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.78757 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.81822 * 180.27970 * 12 11 10 28 28 H 0.96996 * 119.99985 * 359.97438 * 16 14 13 29 29 H 1.09007 * 109.46658 * 60.00395 * 17 16 14 30 30 H 1.08995 * 109.47498 * 300.00456 * 17 16 14 31 31 H 1.09005 * 109.47107 * 184.99852 * 18 17 16 32 32 H 1.08992 * 109.47372 * 305.00528 * 18 17 16 33 33 H 1.08994 * 109.46747 * 299.99763 * 20 19 18 34 34 H 1.09001 * 109.46497 * 59.99903 * 20 19 18 35 35 H 1.08999 * 109.46877 * 185.00196 * 21 20 19 36 36 H 1.08995 * 109.46957 * 304.99930 * 21 20 19 37 37 H 1.08006 * 120.20217 * 180.22812 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5089 -2.1238 0.2922 9 6 3.3689 -1.2425 -0.3846 10 6 3.8625 -0.3098 -1.3165 11 6 5.1880 -0.3426 -1.6888 12 6 6.0444 -1.2850 -1.1474 13 6 5.5709 -2.2230 -0.2241 14 6 6.4915 -3.2305 0.3456 15 8 6.0807 -4.0422 1.1517 16 7 7.7860 -3.2486 -0.0291 17 6 8.6981 -4.2463 0.5357 18 6 10.0968 -4.0492 -0.0522 19 8 10.6149 -2.7844 0.3649 20 6 11.9244 -2.5003 -0.1317 21 6 12.3754 -1.1288 0.3746 22 9 12.5077 -1.1661 1.7669 23 6 4.2354 -2.2038 0.1620 24 1 -0.4850 0.8399 0.0004 25 1 3.2012 0.4318 -1.7396 26 1 5.5622 0.3745 -2.4043 27 1 7.0831 -1.2991 -1.4428 28 1 8.1138 -2.6010 -0.6726 29 1 8.3392 -5.2462 0.2913 30 1 8.7390 -4.1296 1.6186 31 1 10.7540 -4.8447 0.2991 32 1 10.0410 -4.0779 -1.1403 33 1 12.6192 -3.2637 0.2182 34 1 11.9068 -2.4971 -1.2216 35 1 13.3350 -0.8731 -0.0748 36 1 11.6342 -0.3784 0.1000 37 1 3.8663 -2.9238 0.8774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598559491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:22 Heat of formation + Delta-G solvation = -145.492746 kcal Electronic energy + Delta-G solvation = -20983.420230 eV Core-core repulsion = 17445.576493 eV Total energy + Delta-G solvation = -3537.843737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.50756 -41.02613 -39.27932 -38.79949 -35.90160 -35.52946 -32.79524 -31.90374 -31.49934 -29.62353 -27.08908 -25.03074 -23.68332 -23.30660 -22.41727 -21.63931 -19.66508 -18.20176 -18.07216 -17.70230 -17.27339 -17.08707 -16.49116 -16.40989 -16.32000 -15.82856 -15.80842 -15.44025 -15.03593 -14.57796 -14.44943 -14.25469 -13.99698 -13.69871 -13.36500 -13.00328 -12.83590 -12.67658 -12.49242 -12.31163 -11.98945 -11.76651 -11.71643 -11.56478 -11.21142 -10.88108 -10.62593 -10.18996 -9.62923 -9.55171 -8.91893 -6.55814 0.17996 0.74171 1.25222 1.41820 1.48672 1.95080 2.12682 2.20293 2.58013 2.65756 3.45433 3.72802 3.89875 3.96878 4.03993 4.18348 4.19045 4.26543 4.38858 4.40910 4.47708 4.57360 4.57850 4.69882 4.85096 4.89214 4.92098 5.01054 5.15904 5.40881 5.42376 5.65221 5.71374 5.84241 6.10752 6.15932 6.29636 6.57630 6.66082 6.73828 7.23519 8.17370 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.003569 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.319282 B = 7843.442367 C = 8535.080678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.968 3.032 4 H -0.244 1.244 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.490 4.490 8 H 0.049 0.951 9 C 0.066 3.934 10 C -0.225 4.225 11 C -0.082 4.082 12 C -0.181 4.181 13 C -0.114 4.114 14 C 0.559 3.441 15 O -0.589 6.589 16 N -0.705 5.705 17 C 0.116 3.884 18 C 0.059 3.941 19 O -0.411 6.411 20 C 0.023 3.977 21 C 0.054 3.946 22 F -0.241 7.241 23 C -0.168 4.168 24 H 0.295 0.705 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.415 0.585 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.835 -0.286 -6.480 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.169 1.169 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.520 4.520 8 H 0.067 0.933 9 C 0.064 3.936 10 C -0.244 4.244 11 C -0.100 4.100 12 C -0.201 4.201 13 C -0.117 4.117 14 C 0.348 3.652 15 O -0.471 6.471 16 N -0.358 5.358 17 C -0.007 4.007 18 C -0.017 4.017 19 O -0.331 6.331 20 C -0.053 4.053 21 C -0.001 4.001 22 F -0.222 7.222 23 C -0.189 4.189 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.253 0.747 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 25.212 -0.678 -5.753 25.869 hybrid contribution -0.514 0.281 0.178 0.612 sum 24.698 -0.397 -5.575 25.322 Atomic orbital electron populations 1.69718 1.09334 1.31673 1.36853 1.26902 0.95418 1.04379 0.90189 0.85465 0.79484 0.75928 0.80156 1.16872 1.20387 1.17702 1.19469 0.94555 0.95755 1.42172 0.93253 1.17772 0.92462 0.92328 0.91083 1.21402 0.97493 1.03417 1.02099 1.21050 0.92244 0.98015 0.98647 1.20999 1.00225 0.97741 1.01093 1.19723 0.93394 0.97945 1.00676 1.18631 0.82886 0.83309 0.80351 1.90685 1.77907 1.42229 1.36280 1.45690 1.07727 1.35948 1.46483 1.21522 0.88038 0.92475 0.98642 1.22797 0.92477 0.86417 1.00010 1.87970 1.32635 1.37498 1.75028 1.23355 0.84209 0.97233 1.00503 1.22400 1.04580 0.98033 0.75045 1.92743 1.97614 1.97771 1.34079 1.21201 0.92917 1.02397 1.02383 0.89411 0.87487 0.83321 0.83397 0.74658 0.89380 0.92619 0.89336 0.89881 0.91361 0.88537 0.85937 0.89715 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.41 13.93 21.83 0.30 -47.10 16 2 C 0.05 2.48 5.40 85.26 0.46 2.94 16 3 Si 0.97 42.13 24.52 68.60 1.68 43.81 16 4 H -0.24 -9.56 6.71 99.48 0.67 -8.90 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.25 -11.29 6.86 99.48 0.68 -10.61 16 7 C -0.49 -28.61 9.57 23.47 0.22 -28.38 16 8 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 9 C 0.07 3.46 5.10 -21.32 -0.11 3.36 16 10 C -0.22 -10.13 7.17 22.77 0.16 -9.97 16 11 C -0.08 -2.95 10.01 22.18 0.22 -2.73 16 12 C -0.18 -6.22 9.55 22.70 0.22 -6.00 16 13 C -0.11 -4.83 5.87 -20.14 -0.12 -4.95 16 14 C 0.56 21.90 7.77 86.80 0.67 22.58 16 15 O -0.59 -27.71 16.33 -3.88 -0.06 -27.77 16 16 N -0.71 -19.36 5.45 -465.92 -2.54 -21.90 16 17 C 0.12 2.61 6.06 86.38 0.52 3.13 16 18 C 0.06 0.82 6.07 71.98 0.44 1.25 16 19 O -0.41 -7.28 10.28 -148.98 -1.53 -8.82 16 20 C 0.02 0.24 6.40 71.98 0.46 0.70 16 21 C 0.05 0.60 7.93 71.98 0.57 1.17 16 22 F -0.24 -5.05 17.35 44.97 0.78 -4.27 16 23 C -0.17 -8.59 9.34 23.01 0.21 -8.37 16 24 H 0.30 14.66 8.30 -92.72 -0.77 13.89 16 25 H 0.11 4.72 4.72 -2.91 -0.01 4.70 16 26 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.15 3.57 6.38 -2.91 -0.02 3.56 16 28 H 0.42 9.02 6.49 -92.71 -0.60 8.42 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 4.82 7.64 -2.91 -0.02 4.80 16 Total: -1.00 -74.79 319.53 3.00 -71.79 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.43 Total: 19.54 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.94 Total: -25.28 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -2.24 Total: -69.01 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.60 Total: -36.59 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.78 Total: -4.27 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.68 Total: 43.81 kcal Total: -74.79 3.00 -71.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598559491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.705 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds