Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46976 * 299.99732 * 3 2 1 6 6 H 1.48497 * 109.47016 * 59.99841 * 3 2 1 7 7 C 1.37876 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47440 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47449 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47208 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47200 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00440 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99673 * 179.97438 * 13 12 11 16 16 C 1.40134 * 119.99502 * 185.53099 * 15 13 12 17 17 C 1.38781 * 120.07821 * 24.81278 * 16 15 13 18 18 C 1.38172 * 120.02668 * 179.97438 * 17 16 15 19 19 C 1.38291 * 120.17430 * 359.97438 * 18 17 16 20 20 C 1.38410 * 120.15606 * 359.78754 * 19 18 17 21 21 F 1.35096 * 120.01494 * 180.25110 * 20 19 18 22 22 C 1.38746 * 119.97294 * 0.46713 * 20 19 18 23 23 O 1.36032 * 120.09210 * 179.78877 * 22 20 19 24 24 H 0.97002 * 119.99822 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47374 * 60.00158 * 9 7 2 26 26 H 1.09000 * 109.47519 * 300.00083 * 9 7 2 27 27 H 1.09004 * 109.46845 * 59.99666 * 10 9 7 28 28 H 1.09000 * 109.46696 * 300.00420 * 10 9 7 29 29 H 1.08993 * 109.47256 * 59.99517 * 11 10 9 30 30 H 1.09006 * 109.46625 * 299.99543 * 11 10 9 31 31 H 1.09003 * 109.47444 * 59.99714 * 12 11 10 32 32 H 1.09001 * 109.47204 * 299.99702 * 12 11 10 33 33 H 0.96999 * 120.00392 * 5.52836 * 15 13 12 34 34 H 1.08007 * 119.98997 * 359.95215 * 17 16 15 35 35 H 1.07993 * 119.91361 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.92054 * 180.02562 * 19 18 17 37 37 H 0.96706 * 113.99842 * 269.72704 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7210 -7.4551 -0.0005 14 8 0.5081 -7.4552 -0.0005 15 7 2.3950 -8.6223 -0.0005 16 6 1.6992 -9.8330 -0.1175 17 6 0.4541 -9.8633 -0.7297 18 6 -0.2308 -11.0578 -0.8450 19 6 0.3212 -12.2260 -0.3519 20 6 1.5647 -12.2051 0.2556 21 9 2.1035 -13.3488 0.7318 22 6 2.2556 -11.0082 0.3795 23 8 3.4760 -10.9842 0.9800 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8539 -5.0445 -0.8913 30 1 0.8534 -5.0450 0.8887 31 1 3.1006 -6.0923 0.8899 32 1 3.1018 -6.0922 -0.8901 33 1 3.3616 -8.6242 0.0804 34 1 0.0201 -8.9529 -1.1160 35 1 -1.1997 -11.0793 -1.3213 36 1 -0.2175 -13.1574 -0.4445 37 1 3.4419 -10.8304 1.9341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600444524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = -117.992788 kcal Electronic energy + Delta-G solvation = -20630.509277 eV Core-core repulsion = 17093.858028 eV Total energy + Delta-G solvation = -3536.651250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.20395 -40.99396 -39.11681 -37.06978 -35.18793 -34.81581 -32.70818 -30.54660 -29.99547 -29.11600 -25.82922 -23.69269 -23.12127 -22.07503 -20.43251 -20.06984 -19.09140 -18.18706 -17.60474 -16.64392 -16.22318 -16.12617 -15.87326 -15.80715 -15.47522 -14.66728 -14.51422 -14.25318 -14.09677 -13.79932 -12.81687 -12.76881 -12.67692 -12.22629 -12.18059 -11.79657 -11.65211 -11.30233 -11.03811 -10.80281 -10.61754 -10.51575 -10.48245 -9.93209 -9.67013 -9.28529 -9.01919 -8.97654 -8.45413 -8.33736 -5.98314 -4.00881 0.66567 0.77635 2.38566 2.65864 3.17538 3.31282 3.38689 3.42424 3.59358 4.02071 4.43664 4.47246 4.56488 4.68576 4.96450 5.05834 5.18605 5.22064 5.37339 5.43867 5.67796 5.71330 5.74990 6.00057 6.04084 6.09490 6.19880 6.44628 6.47241 6.75728 6.93012 7.06629 7.12435 7.15520 7.70657 7.85427 7.87978 8.02686 8.44436 9.07023 9.63133 11.13038 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049897 B = 0.002433 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.021841 B =11506.737994 C =11964.746591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.513 3.487 14 O -0.509 6.509 15 N -0.672 5.672 16 C 0.163 3.837 17 C -0.132 4.132 18 C -0.074 4.074 19 C -0.165 4.165 20 C 0.095 3.905 21 F -0.132 7.132 22 C 0.031 3.969 23 O -0.484 6.484 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.159 0.841 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 -25.184 0.308 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.303 3.697 14 O -0.383 6.383 15 N -0.317 5.317 16 C 0.066 3.934 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.185 4.185 20 C 0.075 3.925 21 F -0.111 7.111 22 C -0.018 4.018 23 O -0.294 6.294 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.176 0.824 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.510 -25.100 -0.245 25.345 hybrid contribution 0.939 0.730 0.694 1.377 sum 4.449 -24.369 0.449 24.776 Atomic orbital electron populations 1.69981 1.06058 1.26443 1.50977 1.25044 0.94844 0.99271 0.95431 0.86555 0.80079 0.83899 0.77570 1.19775 1.21029 1.21043 1.21310 0.93023 0.91164 1.50353 0.92689 1.19101 0.94043 0.91276 0.97338 1.21652 0.99117 0.93839 1.00208 1.21488 0.96972 0.92638 1.03146 1.21850 1.00256 0.90989 1.04618 1.21449 0.88599 0.85311 0.74381 1.90682 1.14102 1.87160 1.46383 1.43752 1.11458 1.03846 1.72659 1.17963 0.93313 0.84791 0.97289 1.21542 0.94001 1.00315 0.99347 1.20995 0.99950 0.90819 0.97483 1.21090 0.94519 1.00488 1.02392 1.17744 0.92943 0.81512 1.00296 1.91499 1.85903 1.47507 1.86167 1.17953 0.88559 0.90908 1.04334 1.84891 1.23821 1.94335 1.26318 0.93070 0.96556 0.96582 0.93379 0.93362 0.91594 0.91627 0.88610 0.88440 0.74579 0.82388 0.84200 0.84285 0.75494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C -0.10 -1.72 4.50 -26.74 -0.12 -1.84 16 12 C -0.14 -1.61 5.70 -27.89 -0.16 -1.77 16 13 C 0.51 6.33 7.64 -10.98 -0.08 6.25 16 14 O -0.51 -8.03 13.15 5.55 0.07 -7.96 16 15 N -0.67 -6.59 5.29 -9.75 -0.05 -6.65 16 16 C 0.16 1.75 6.44 -83.50 -0.54 1.21 16 17 C -0.13 -1.44 8.72 -39.41 -0.34 -1.79 16 18 C -0.07 -0.64 10.04 -39.59 -0.40 -1.04 16 19 C -0.17 -1.41 10.02 -39.50 -0.40 -1.80 16 20 C 0.10 0.96 7.30 -39.33 -0.29 0.67 16 21 F -0.13 -1.41 17.11 2.25 0.04 -1.37 16 22 C 0.03 0.31 6.73 -39.03 -0.26 0.05 16 23 O -0.48 -4.14 12.78 -19.84 -0.25 -4.40 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.42 3.04 8.34 -40.82 -0.34 2.70 16 34 H 0.16 1.97 5.79 -52.48 -0.30 1.66 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.39 1.79 9.07 45.56 0.41 2.20 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -33.78 324.67 -6.86 -40.64 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.00 Total: 0.24 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.28 Total: -15.56 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.68 Total: -33.11 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.18 Total: -12.36 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.78 -6.86 -40.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600444524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.357 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds