Wall clock time and date at job start Tue Mar 31 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47864 * 2 1 4 4 C 1.50696 * 109.47599 * 180.02562 * 3 2 1 5 5 C 1.33813 * 124.52140 * 90.00008 * 4 3 2 6 6 C 1.37475 * 115.10116 * 179.97438 * 5 4 3 7 7 C 1.36647 * 113.29588 * 0.02562 * 6 5 4 8 8 C 1.46586 * 125.45919 * 179.97438 * 7 6 5 9 9 O 1.21704 * 119.99669 * 352.26982 * 8 7 6 10 10 N 1.34772 * 120.00219 * 172.27856 * 8 7 6 11 11 C 1.46504 * 119.99751 * 2.33727 * 10 8 7 12 12 C 1.52990 * 109.47380 * 82.45776 * 11 10 8 13 13 C 1.46501 * 120.00211 * 182.33389 * 10 8 7 14 14 C 1.50702 * 109.46691 * 90.00118 * 13 10 8 15 15 H 1.08000 * 120.00601 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99874 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00224 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47303 * 89.99402 * 18 16 14 20 20 H 1.48492 * 109.47372 * 210.00057 * 18 16 14 21 21 H 1.48501 * 109.47003 * 329.99852 * 18 16 14 22 22 S 1.70614 * 124.52134 * 269.69835 * 4 3 2 23 23 H 1.09000 * 109.46950 * 300.00217 * 1 2 3 24 24 H 1.09005 * 109.47294 * 59.99315 * 1 2 3 25 25 H 1.08995 * 109.47963 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46950 * 239.99783 * 2 1 3 27 27 H 1.09005 * 109.47294 * 120.00685 * 2 1 3 28 28 H 1.09000 * 109.47015 * 59.99822 * 3 2 1 29 29 H 1.08997 * 109.47023 * 300.00582 * 3 2 1 30 30 H 1.07995 * 122.44974 * 359.94192 * 5 4 3 31 31 H 1.08002 * 123.35058 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46970 * 202.45527 * 11 10 8 33 33 H 1.08998 * 109.47177 * 322.44944 * 11 10 8 34 34 H 1.08998 * 109.47594 * 60.00009 * 12 11 10 35 35 H 1.09002 * 109.47309 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47402 * 299.99855 * 12 11 10 37 37 H 1.09001 * 109.47326 * 209.99815 * 13 10 8 38 38 H 1.08997 * 109.47033 * 330.00196 * 13 10 8 39 39 H 0.96992 * 120.00276 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.3049 1.4425 -1.1035 6 6 5.6612 1.4429 -0.8790 7 6 5.9895 1.4426 0.4474 8 6 7.3528 1.4424 0.9861 9 8 8.3025 1.3008 0.2383 10 7 7.5546 1.5989 2.3094 11 6 6.4098 1.7179 3.2158 12 6 5.8801 0.3231 3.5543 13 6 8.9186 1.6500 2.8414 14 6 9.3992 3.0783 2.8550 15 1 8.7534 3.8688 2.5023 16 6 10.6639 3.3757 3.3169 17 7 11.4505 2.4131 3.7460 18 14 11.2599 5.1460 3.3331 19 1 10.9076 5.7751 4.6313 20 1 12.7337 5.1737 3.1534 21 1 10.6122 5.8965 2.2275 22 16 4.5145 1.4495 1.4047 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8820 1.4417 -2.0972 31 1 6.3943 1.4427 -1.6721 32 1 6.7221 2.2200 4.1316 33 1 5.6232 2.2982 2.7335 34 1 6.6667 -0.2572 4.0367 35 1 5.0281 0.4116 4.2283 36 1 5.5678 -0.1791 2.6387 37 1 8.9276 1.2540 3.8569 38 1 9.5767 1.0512 2.2120 39 1 12.3400 2.6223 4.0713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:34 Heat of formation + Delta-G solvation = -16.448947 kcal Electronic energy + Delta-G solvation = -19741.412337 eV Core-core repulsion = 16775.377535 eV Total energy + Delta-G solvation = -2966.034802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.18429 -37.82542 -35.39930 -34.88628 -32.88491 -30.56029 -30.05109 -27.77356 -26.19347 -23.85035 -23.15605 -22.69734 -21.58144 -20.09738 -18.19741 -17.42446 -16.42870 -15.95603 -15.55424 -14.97042 -14.88201 -14.47534 -14.00534 -13.95449 -13.78794 -13.30912 -12.99303 -12.65062 -12.45596 -12.23299 -12.02182 -11.92410 -11.62648 -11.53856 -11.43869 -11.17740 -11.01237 -10.95223 -10.90301 -10.61488 -10.25985 -10.04645 -9.66562 -9.12708 -8.44769 -8.42515 -8.15826 -7.70206 -6.05569 -4.10596 0.81837 1.74418 2.18205 2.68946 3.30033 3.36849 3.41526 3.79987 3.92880 4.44429 4.59489 4.74883 4.83967 5.02192 5.18988 5.20525 5.29299 5.30555 5.46381 5.48028 5.55959 5.57534 5.67229 5.69555 5.82782 5.93421 5.94339 6.04315 6.11446 6.21712 6.39503 6.42200 6.61402 7.03665 7.41086 7.48637 7.90663 8.20697 8.32084 8.86339 9.02050 9.54562 11.02503 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.004085 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.960661 B = 6852.451122 C = 7072.984980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.047 4.047 4 C -0.246 4.246 5 C -0.152 4.152 6 C -0.068 4.068 7 C -0.253 4.253 8 C 0.576 3.424 9 O -0.530 6.530 10 N -0.591 5.591 11 C 0.096 3.904 12 C -0.179 4.179 13 C 0.247 3.753 14 C -0.529 4.529 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 S 0.234 5.766 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.087 -3.929 -3.521 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.364 4.364 5 C -0.182 4.182 6 C -0.101 4.101 7 C -0.373 4.373 8 C 0.362 3.638 9 O -0.409 6.409 10 N -0.322 5.322 11 C -0.030 4.030 12 C -0.238 4.238 13 C 0.129 3.871 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 S 0.504 5.496 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.708 -4.026 -2.295 21.220 hybrid contribution 0.647 1.056 -1.596 2.020 sum -20.061 -2.971 -3.891 20.650 Atomic orbital electron populations 1.21783 0.95607 1.01752 1.01829 1.21552 0.95590 0.95953 1.02710 1.20137 0.87987 0.97543 1.02883 1.24984 1.01393 1.08541 1.01464 1.19815 0.92608 1.06739 0.99084 1.20662 0.95969 0.98064 0.95363 1.24973 0.97309 1.17133 0.97894 1.16966 0.86090 0.77980 0.82736 1.90793 1.41976 1.50483 1.57634 1.48160 1.09115 1.69792 1.05107 1.21709 0.88485 0.96963 0.95850 1.22459 1.01562 0.97764 1.02025 1.19348 0.75565 0.97763 0.94467 1.21444 0.99934 0.92839 1.42560 0.92374 1.24932 0.96321 0.97642 0.95128 1.69929 1.08924 1.31834 1.42605 0.86483 0.77987 0.84584 0.78317 1.20599 1.21052 1.19852 1.83811 0.93458 1.67392 1.04968 0.92661 0.92714 0.92607 0.91654 0.91695 0.91026 0.90603 0.85081 0.83478 0.88323 0.91484 0.91421 0.91294 0.92020 0.94675 0.93522 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.15 0.37 -0.63 16 2 C -0.12 -0.98 5.92 -26.74 -0.16 -1.14 16 3 C -0.05 -0.42 5.65 -27.89 -0.16 -0.58 16 4 C -0.25 -2.96 5.53 -35.86 -0.20 -3.16 16 5 C -0.15 -1.99 9.99 -41.41 -0.41 -2.40 16 6 C -0.07 -1.09 10.02 -40.43 -0.41 -1.49 16 7 C -0.25 -4.50 6.11 -36.79 -0.22 -4.72 16 8 C 0.58 12.96 7.57 -12.90 -0.10 12.87 16 9 O -0.53 -14.10 16.42 5.19 0.09 -14.01 16 10 N -0.59 -12.95 2.48 -176.64 -0.44 -13.39 16 11 C 0.10 1.60 5.67 -4.04 -0.02 1.58 16 12 C -0.18 -2.42 8.94 37.15 0.33 -2.09 16 13 C 0.25 6.51 5.14 -5.19 -0.03 6.49 16 14 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 S 0.23 3.09 15.31 -107.50 -1.65 1.45 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.10 1.63 8.02 -51.92 -0.42 1.21 16 33 H 0.07 1.02 4.42 -21.84 -0.10 0.93 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.84 6.03 -45.47 -0.27 0.57 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.05 1.39 7.39 -51.93 -0.38 1.00 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -32.73 333.10 -8.47 -41.20 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.79 Total: -2.33 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.43 Total: -9.03 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.30 Total: -39.21 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.65 Total: 1.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.73 -8.47 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.752 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds