Wall clock time and date at job start Tue Mar 31 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47864 * 2 1 4 4 C 1.50696 * 109.47599 * 180.02562 * 3 2 1 5 5 C 1.33813 * 124.52140 * 90.00008 * 4 3 2 6 6 C 1.37475 * 115.10116 * 179.97438 * 5 4 3 7 7 C 1.36647 * 113.29588 * 0.02562 * 6 5 4 8 8 C 1.46586 * 125.45919 * 179.97438 * 7 6 5 9 9 O 1.21704 * 119.99669 * 352.26982 * 8 7 6 10 10 N 1.34772 * 120.00219 * 172.27856 * 8 7 6 11 11 C 1.46504 * 119.99751 * 2.33727 * 10 8 7 12 12 C 1.52990 * 109.47380 * 82.45776 * 11 10 8 13 13 C 1.46501 * 120.00211 * 182.33389 * 10 8 7 14 14 C 1.50702 * 109.46691 * 90.00118 * 13 10 8 15 15 H 1.08000 * 120.00601 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99874 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00224 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47303 * 89.99402 * 18 16 14 20 20 H 1.48492 * 109.47372 * 210.00057 * 18 16 14 21 21 H 1.48501 * 109.47003 * 329.99852 * 18 16 14 22 22 S 1.70614 * 124.52134 * 269.69835 * 4 3 2 23 23 H 1.09000 * 109.46950 * 300.00217 * 1 2 3 24 24 H 1.09005 * 109.47294 * 59.99315 * 1 2 3 25 25 H 1.08995 * 109.47963 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46950 * 239.99783 * 2 1 3 27 27 H 1.09005 * 109.47294 * 120.00685 * 2 1 3 28 28 H 1.09000 * 109.47015 * 59.99822 * 3 2 1 29 29 H 1.08997 * 109.47023 * 300.00582 * 3 2 1 30 30 H 1.07995 * 122.44974 * 359.94192 * 5 4 3 31 31 H 1.08002 * 123.35058 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46970 * 202.45527 * 11 10 8 33 33 H 1.08998 * 109.47177 * 322.44944 * 11 10 8 34 34 H 1.08998 * 109.47594 * 60.00009 * 12 11 10 35 35 H 1.09002 * 109.47309 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47402 * 299.99855 * 12 11 10 37 37 H 1.09001 * 109.47326 * 209.99815 * 13 10 8 38 38 H 1.08997 * 109.47033 * 330.00196 * 13 10 8 39 39 H 0.96992 * 120.00276 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.3049 1.4425 -1.1035 6 6 5.6612 1.4429 -0.8790 7 6 5.9895 1.4426 0.4474 8 6 7.3528 1.4424 0.9861 9 8 8.3025 1.3008 0.2383 10 7 7.5546 1.5989 2.3094 11 6 6.4098 1.7179 3.2158 12 6 5.8801 0.3231 3.5543 13 6 8.9186 1.6500 2.8414 14 6 9.3992 3.0783 2.8550 15 1 8.7534 3.8688 2.5023 16 6 10.6639 3.3757 3.3169 17 7 11.4505 2.4131 3.7460 18 14 11.2599 5.1460 3.3331 19 1 10.9076 5.7751 4.6313 20 1 12.7337 5.1737 3.1534 21 1 10.6122 5.8965 2.2275 22 16 4.5145 1.4495 1.4047 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8820 1.4417 -2.0972 31 1 6.3943 1.4427 -1.6721 32 1 6.7221 2.2200 4.1316 33 1 5.6232 2.2982 2.7335 34 1 6.6667 -0.2572 4.0367 35 1 5.0281 0.4116 4.2283 36 1 5.5678 -0.1791 2.6387 37 1 8.9276 1.2540 3.8569 38 1 9.5767 1.0512 2.2120 39 1 12.3400 2.6223 4.0713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:34 Heat of formation + Delta-G solvation = -35.824103 kcal Electronic energy + Delta-G solvation = -19742.252507 eV Core-core repulsion = 16775.377535 eV Total energy + Delta-G solvation = -2966.874972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84799 -38.95658 -37.07653 -35.73177 -34.98053 -32.07319 -31.16503 -29.41766 -27.57347 -25.26307 -24.64152 -24.08618 -22.26967 -21.56741 -19.48543 -18.95758 -18.57390 -17.39410 -16.81644 -16.54089 -16.22495 -15.78996 -15.48050 -15.21823 -14.73677 -14.52079 -14.30736 -14.10754 -13.71439 -13.47527 -13.38098 -13.31787 -13.11782 -12.79641 -12.65270 -12.50812 -12.37170 -12.25284 -12.17522 -11.96754 -11.78359 -11.60821 -11.23036 -10.89971 -10.66174 -9.77320 -9.42126 -9.21608 -8.25218 -6.40616 -0.41358 0.55514 1.06320 1.35282 1.38732 1.47428 1.50094 2.14584 2.32080 2.40075 3.04271 3.61426 3.78742 3.91141 4.13034 4.20884 4.22628 4.35539 4.44683 4.50425 4.68307 4.76805 4.82446 4.84072 4.89993 4.95685 5.02243 5.10683 5.16050 5.25127 5.29239 5.31294 5.35435 5.49068 5.50183 5.53314 5.76935 6.01421 6.58869 6.68016 7.19416 7.34704 8.82152 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.004085 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.960661 B = 6852.451122 C = 7072.984980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.048 4.048 4 C -0.221 4.221 5 C -0.163 4.163 6 C -0.062 4.062 7 C -0.309 4.309 8 C 0.568 3.432 9 O -0.593 6.593 10 N -0.597 5.597 11 C 0.088 3.912 12 C -0.172 4.172 13 C 0.263 3.737 14 C -0.548 4.548 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.970 3.030 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.275 1.275 22 S 0.290 5.710 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.032 0.968 38 H -0.001 1.001 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.664 -2.919 -3.062 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.087 4.087 4 C -0.340 4.340 5 C -0.193 4.193 6 C -0.096 4.096 7 C -0.429 4.429 8 C 0.357 3.643 9 O -0.477 6.477 10 N -0.327 5.327 11 C -0.037 4.037 12 C -0.230 4.230 13 C 0.142 3.858 14 C -0.587 4.587 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.200 1.200 22 S 0.561 5.439 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.176 0.824 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.334 -3.021 -1.792 24.586 hybrid contribution 1.620 0.687 -1.775 2.500 sum -22.714 -2.333 -3.567 23.110 Atomic orbital electron populations 1.21761 0.94215 1.02273 1.02479 1.21547 0.96780 0.95017 1.02406 1.20335 0.85217 0.98609 1.04547 1.25470 1.03133 1.04934 1.00511 1.19941 0.91022 1.07428 1.00860 1.20840 0.97466 0.96717 0.94569 1.24559 0.96891 1.21900 0.99554 1.17638 0.87705 0.76609 0.82342 1.90728 1.44583 1.53397 1.58992 1.48148 1.08907 1.69608 1.06029 1.22064 0.87210 0.99466 0.94919 1.22423 1.02570 0.95249 1.02796 1.18812 0.77667 0.96149 0.93135 1.21684 1.00567 0.93478 1.42934 0.93029 1.25859 0.96297 1.02357 0.94408 1.70045 1.09362 1.34119 1.43024 0.85388 0.77401 0.78888 0.78974 1.18446 1.20464 1.20005 1.83295 0.90249 1.66147 1.04221 0.91998 0.92107 0.92239 0.92119 0.91996 0.89429 0.88945 0.82426 0.84755 0.88377 0.89604 0.92673 0.86955 0.92055 0.95042 0.98267 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 3 C -0.05 -0.66 5.65 29.85 0.17 -0.49 16 4 C -0.22 -4.59 5.53 24.68 0.14 -4.46 16 5 C -0.16 -3.90 9.99 21.08 0.21 -3.69 16 6 C -0.06 -1.98 10.02 21.72 0.22 -1.76 16 7 C -0.31 -11.15 6.11 24.08 0.15 -11.00 16 8 C 0.57 27.03 7.57 86.42 0.65 27.68 16 9 O -0.59 -34.18 16.42 -4.36 -0.07 -34.25 16 10 N -0.60 -27.42 2.48 -830.98 -2.06 -29.48 16 11 C 0.09 2.88 5.67 86.38 0.49 3.37 16 12 C -0.17 -4.38 8.94 71.98 0.64 -3.74 16 13 C 0.26 14.74 5.14 85.63 0.44 15.18 16 14 C -0.55 -32.53 9.39 25.60 0.24 -32.29 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.59 5.46 84.66 0.46 1.05 16 17 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 18 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 S 0.29 6.97 15.31 -56.49 -0.87 6.10 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.10 3.21 8.02 -2.38 -0.02 3.19 16 33 H 0.09 2.48 4.42 -21.52 -0.10 2.39 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.58 6.03 -6.50 -0.04 1.54 16 37 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 38 H 0.00 -0.05 7.39 -2.39 -0.02 -0.07 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -76.05 333.10 4.94 -71.12 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.92 Total: 7.39 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.71 Total: -12.14 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.77 Total: -85.81 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.07 Total: -34.25 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -0.87 Total: 6.10 kcal Total: -76.05 4.94 -71.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.292 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds