Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33814 * 124.52157 * 2 1 4 4 C 1.37480 * 115.09889 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.34718 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29715 * 0.23213 * 4 3 2 7 7 C 1.46583 * 125.45533 * 179.76610 * 6 4 3 8 8 O 1.21699 * 120.00432 * 351.52133 * 7 6 4 9 9 N 1.34779 * 119.99616 * 171.51691 * 7 6 4 10 10 C 1.46499 * 120.00054 * 2.11288 * 9 7 6 11 11 C 1.50704 * 109.46915 * 82.05781 * 10 9 7 12 12 H 1.08001 * 120.00048 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00114 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99731 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00143 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47150 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46959 * 120.00177 * 15 13 11 18 18 H 1.48500 * 109.47128 * 240.00028 * 15 13 11 19 19 C 1.46503 * 119.99492 * 182.11241 * 9 7 6 20 20 C 1.53006 * 109.46883 * 114.95770 * 19 9 7 21 21 C 1.53006 * 109.46997 * 234.95375 * 19 9 7 22 22 S 1.70616 * 124.52185 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47065 * 90.00015 * 1 2 3 24 24 H 1.09001 * 109.46813 * 209.99783 * 1 2 3 25 25 H 1.09001 * 109.46925 * 329.99837 * 1 2 3 26 26 H 1.07998 * 122.45228 * 0.03956 * 3 2 1 27 27 H 1.08995 * 109.47260 * 90.02642 * 5 4 3 28 28 H 1.09006 * 109.47297 * 330.02296 * 5 4 3 29 29 H 1.09007 * 109.47086 * 210.02296 * 5 4 3 30 30 H 1.08997 * 109.46903 * 202.05090 * 10 9 7 31 31 H 1.08989 * 109.47342 * 322.05824 * 10 9 7 32 32 H 0.96999 * 119.99894 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47658 * 354.95710 * 19 9 7 34 34 H 1.09003 * 109.46953 * 59.99929 * 20 19 9 35 35 H 1.08998 * 109.47054 * 179.97438 * 20 19 9 36 36 H 1.08999 * 109.47094 * 299.99502 * 20 19 9 37 37 H 1.08995 * 109.46670 * 60.00423 * 21 19 9 38 38 H 1.08998 * 109.47197 * 180.02562 * 21 19 9 39 39 H 1.09002 * 109.46845 * 300.00793 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9883 -0.0129 8 8 6.2611 -0.2423 -0.1693 9 7 5.5149 -2.3102 0.1543 10 6 4.3710 -3.2144 0.2963 11 6 3.8260 -3.5530 -1.0673 12 1 4.2855 -3.1360 -1.9513 13 6 2.7408 -4.3951 -1.1864 14 7 2.1816 -4.9032 -0.1100 15 14 2.0648 -4.8142 -2.8765 16 1 2.8660 -4.1198 -3.9162 17 1 2.1423 -6.2817 -3.0906 18 1 0.6491 -4.3750 -2.9663 19 6 6.8791 -2.8429 0.1938 20 6 7.1605 -3.4217 1.5820 21 6 7.0271 -3.9445 -0.8576 22 16 2.4739 -1.4057 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8429 2.0964 0.0006 27 1 4.8925 2.2503 1.0262 28 1 4.2380 2.8549 -0.5147 29 1 5.5447 1.6461 -0.5158 30 1 4.6903 -4.1283 0.7971 31 1 3.5949 -2.7283 0.8873 32 1 1.4179 -5.4954 -0.1937 33 1 7.5881 -2.0422 -0.0165 34 1 6.4515 -4.2224 1.7923 35 1 8.1753 -3.8184 1.6113 36 1 7.0551 -2.6369 2.3310 37 1 6.8267 -3.5322 -1.8465 38 1 8.0420 -4.3412 -0.8279 39 1 6.3180 -4.7452 -0.6472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601025813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -17.911958 kcal Electronic energy + Delta-G solvation = -20892.873033 eV Core-core repulsion = 17926.774790 eV Total energy + Delta-G solvation = -2966.098243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.29199 -37.44917 -35.59628 -33.35142 -32.03133 -31.36647 -27.84008 -27.39653 -26.61725 -26.52532 -23.25460 -21.77769 -21.14741 -19.00425 -17.35747 -17.24045 -16.70467 -15.33808 -15.11607 -14.55699 -14.34427 -13.86006 -13.52225 -13.36277 -12.88287 -12.77429 -12.47664 -12.39872 -12.38788 -12.29847 -12.10314 -11.66617 -11.63442 -11.18708 -11.12602 -11.07665 -10.93387 -10.77435 -10.65498 -10.41777 -10.04138 -9.80442 -9.10455 -8.97425 -8.73821 -7.95033 -7.68619 -7.31982 -6.35780 -4.36655 1.41181 2.61753 3.03332 3.11350 3.15385 3.23099 3.28219 3.88985 4.04761 4.22752 4.98412 5.35442 5.41147 5.65091 5.67430 5.72246 5.80112 5.87189 5.89567 6.01155 6.08782 6.13024 6.16322 6.23158 6.28175 6.35606 6.37459 6.56395 6.65197 6.70198 6.79715 6.93368 6.99349 7.15639 7.24333 7.48276 7.61844 7.80202 8.26903 8.64384 9.02221 9.23039 10.68295 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.010765 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.033657 B = 2600.290258 C = 4332.134543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.299 4.299 3 C -0.171 4.171 4 C -0.048 4.048 5 C -0.098 4.098 6 C -0.299 4.299 7 C 0.593 3.407 8 O -0.567 6.567 9 N -0.593 5.593 10 C 0.227 3.773 11 C -0.529 4.529 12 H 0.069 0.931 13 C 0.075 3.925 14 N -0.877 5.877 15 Si 0.888 3.112 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.278 1.278 19 C 0.138 3.862 20 C -0.159 4.159 21 C -0.152 4.152 22 S 0.395 5.605 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 4.126 1.801 4.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.418 4.418 3 C -0.202 4.202 4 C -0.064 4.064 5 C -0.157 4.157 6 C -0.421 4.421 7 C 0.383 3.617 8 O -0.451 6.451 9 N -0.323 5.323 10 C 0.104 3.896 11 C -0.571 4.571 12 H 0.087 0.913 13 C -0.131 4.131 14 N -0.514 5.514 15 Si 0.715 3.285 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.204 1.204 19 C 0.034 3.966 20 C -0.217 4.217 21 C -0.210 4.210 22 S 0.674 5.326 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.591 2.817 1.817 3.404 hybrid contribution -0.426 1.238 -0.934 1.608 sum 0.165 4.055 0.883 4.153 Atomic orbital electron populations 1.20187 0.89290 1.02023 1.01799 1.25710 1.02326 1.05060 1.08685 1.19436 0.92142 0.98398 1.10192 1.19116 0.94277 0.93133 0.99907 1.20607 0.98509 0.94805 1.01733 1.24454 0.98457 0.97841 1.21306 1.17002 0.86848 0.81927 0.75915 1.90613 1.42886 1.58308 1.53263 1.48114 1.07734 1.06510 1.69981 1.19606 0.82429 0.89748 0.97784 1.21546 1.14214 1.28674 0.92679 0.91285 1.24893 0.96122 0.94948 0.97111 1.69916 1.22458 1.31007 1.28007 0.86554 0.79269 0.78508 0.84190 1.19281 1.20577 1.20407 1.20863 0.84201 0.96590 0.94912 1.22144 1.01301 1.01279 0.96984 1.22056 1.00752 0.99162 0.99006 1.85989 0.89809 0.97150 1.59688 0.91666 0.91784 0.91990 0.86527 0.92189 0.92952 0.89138 0.92875 0.94269 0.92133 0.89315 0.91939 0.92212 0.92923 0.92500 0.93100 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.31 36.01 0.37 -0.76 16 2 C -0.30 -5.55 6.28 -35.86 -0.23 -5.77 16 3 C -0.17 -3.14 9.82 -41.41 -0.41 -3.55 16 4 C -0.05 -0.95 5.90 -105.47 -0.62 -1.58 16 5 C -0.10 -1.72 9.67 36.01 0.35 -1.37 16 6 C -0.30 -6.51 6.23 -36.79 -0.23 -6.74 16 7 C 0.59 13.39 7.54 -12.89 -0.10 13.30 16 8 O -0.57 -13.33 13.57 5.19 0.07 -13.26 16 9 N -0.59 -12.63 2.38 -169.04 -0.40 -13.03 16 10 C 0.23 5.10 3.87 -5.19 -0.02 5.08 16 11 C -0.53 -12.62 6.14 -34.44 -0.21 -12.83 16 12 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.07 1.80 5.01 -17.82 -0.09 1.71 16 14 N -0.88 -21.63 13.29 55.43 0.74 -20.90 16 15 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.14 2.54 3.22 -67.92 -0.22 2.32 16 20 C -0.16 -2.51 9.26 37.16 0.34 -2.16 16 21 C -0.15 -2.62 8.70 37.16 0.32 -2.30 16 22 S 0.40 8.31 15.79 -107.50 -1.70 6.61 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.76 5.84 -51.93 -0.30 1.45 16 30 H 0.05 1.23 6.45 -51.93 -0.33 0.90 16 31 H 0.04 0.94 4.53 -22.56 -0.10 0.84 16 32 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 33 H 0.09 1.68 6.91 -51.93 -0.36 1.32 16 34 H 0.06 1.02 6.93 -51.93 -0.36 0.66 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -26.13 323.03 -7.78 -33.91 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.60 Total: 2.13 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.73 Total: -14.65 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.33 Total: -33.93 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 8.31 SS G_CDS: -1.70 Total: 6.61 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.13 -7.78 -33.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601025813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.999 kcal (2) G-P(sol) polarization free energy of solvation -26.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds