Wall clock time and date at job start Tue Mar 31 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33814 * 124.52157 * 2 1 4 4 C 1.37480 * 115.09889 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.34718 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29715 * 0.23213 * 4 3 2 7 7 C 1.46583 * 125.45533 * 179.76610 * 6 4 3 8 8 O 1.21699 * 120.00432 * 351.52133 * 7 6 4 9 9 N 1.34779 * 119.99616 * 171.51691 * 7 6 4 10 10 C 1.46499 * 120.00054 * 2.11288 * 9 7 6 11 11 C 1.50704 * 109.46915 * 82.05781 * 10 9 7 12 12 H 1.08001 * 120.00048 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00114 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99731 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00143 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47150 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46959 * 120.00177 * 15 13 11 18 18 H 1.48500 * 109.47128 * 240.00028 * 15 13 11 19 19 C 1.46503 * 119.99492 * 182.11241 * 9 7 6 20 20 C 1.53006 * 109.46883 * 114.95770 * 19 9 7 21 21 C 1.53006 * 109.46997 * 234.95375 * 19 9 7 22 22 S 1.70616 * 124.52185 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47065 * 90.00015 * 1 2 3 24 24 H 1.09001 * 109.46813 * 209.99783 * 1 2 3 25 25 H 1.09001 * 109.46925 * 329.99837 * 1 2 3 26 26 H 1.07998 * 122.45228 * 0.03956 * 3 2 1 27 27 H 1.08995 * 109.47260 * 90.02642 * 5 4 3 28 28 H 1.09006 * 109.47297 * 330.02296 * 5 4 3 29 29 H 1.09007 * 109.47086 * 210.02296 * 5 4 3 30 30 H 1.08997 * 109.46903 * 202.05090 * 10 9 7 31 31 H 1.08989 * 109.47342 * 322.05824 * 10 9 7 32 32 H 0.96999 * 119.99894 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47658 * 354.95710 * 19 9 7 34 34 H 1.09003 * 109.46953 * 59.99929 * 20 19 9 35 35 H 1.08998 * 109.47054 * 179.97438 * 20 19 9 36 36 H 1.08999 * 109.47094 * 299.99502 * 20 19 9 37 37 H 1.08995 * 109.46670 * 60.00423 * 21 19 9 38 38 H 1.08998 * 109.47197 * 180.02562 * 21 19 9 39 39 H 1.09002 * 109.46845 * 300.00793 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9883 -0.0129 8 8 6.2611 -0.2423 -0.1693 9 7 5.5149 -2.3102 0.1543 10 6 4.3710 -3.2144 0.2963 11 6 3.8260 -3.5530 -1.0673 12 1 4.2855 -3.1360 -1.9513 13 6 2.7408 -4.3951 -1.1864 14 7 2.1816 -4.9032 -0.1100 15 14 2.0648 -4.8142 -2.8765 16 1 2.8660 -4.1198 -3.9162 17 1 2.1423 -6.2817 -3.0906 18 1 0.6491 -4.3750 -2.9663 19 6 6.8791 -2.8429 0.1938 20 6 7.1605 -3.4217 1.5820 21 6 7.0271 -3.9445 -0.8576 22 16 2.4739 -1.4057 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8429 2.0964 0.0006 27 1 4.8925 2.2503 1.0262 28 1 4.2380 2.8549 -0.5147 29 1 5.5447 1.6461 -0.5158 30 1 4.6903 -4.1283 0.7971 31 1 3.5949 -2.7283 0.8873 32 1 1.4179 -5.4954 -0.1937 33 1 7.5881 -2.0422 -0.0165 34 1 6.4515 -4.2224 1.7923 35 1 8.1753 -3.8184 1.6113 36 1 7.0551 -2.6369 2.3310 37 1 6.8267 -3.5322 -1.8465 38 1 8.0420 -4.3412 -0.8279 39 1 6.3180 -4.7452 -0.6472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601025813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:24 Heat of formation + Delta-G solvation = -30.226300 kcal Electronic energy + Delta-G solvation = -20893.407023 eV Core-core repulsion = 17926.774790 eV Total energy + Delta-G solvation = -2966.632233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95525 -38.96871 -37.25679 -35.09055 -33.56910 -32.87637 -29.42481 -29.01378 -27.99068 -27.98574 -25.07364 -23.29333 -22.60869 -20.54372 -19.03367 -18.85084 -18.53674 -16.91848 -16.73700 -16.29155 -15.99886 -15.33540 -14.91996 -14.82888 -14.51825 -14.27877 -14.06688 -13.91866 -13.82194 -13.72969 -13.53035 -13.21730 -12.98290 -12.82305 -12.72433 -12.57640 -12.35772 -12.28400 -12.22765 -12.05630 -11.65311 -11.55362 -10.77373 -10.60671 -10.52901 -9.62038 -9.25226 -8.93459 -8.20087 -6.25106 -0.15601 1.02957 1.37151 1.44897 1.52233 1.52514 1.60323 2.25364 2.38515 2.45476 3.11792 3.80978 4.04187 4.15221 4.26372 4.40941 4.44788 4.47089 4.64126 4.67707 4.75446 4.78140 4.81316 4.86625 4.86952 4.97745 5.04233 5.06261 5.11887 5.24636 5.32850 5.37432 5.46646 5.62332 5.69520 5.78803 5.89239 5.97855 6.52310 6.78409 7.28250 7.39208 8.83960 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.010765 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.033657 B = 2600.290258 C = 4332.134543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.282 4.282 3 C -0.174 4.174 4 C -0.045 4.045 5 C -0.095 4.095 6 C -0.331 4.331 7 C 0.583 3.417 8 O -0.586 6.586 9 N -0.595 5.595 10 C 0.239 3.761 11 C -0.527 4.527 12 H 0.048 0.952 13 C 0.050 3.950 14 N -0.897 5.897 15 Si 0.930 3.070 16 H -0.277 1.277 17 H -0.276 1.276 18 H -0.273 1.273 19 C 0.128 3.872 20 C -0.149 4.149 21 C -0.141 4.141 22 S 0.342 5.658 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.271 0.729 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.059 5.156 1.845 5.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.402 4.402 3 C -0.204 4.204 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.451 4.451 7 C 0.374 3.626 8 O -0.471 6.471 9 N -0.325 5.325 10 C 0.117 3.883 11 C -0.569 4.569 12 H 0.066 0.934 13 C -0.154 4.154 14 N -0.534 5.534 15 Si 0.756 3.244 16 H -0.202 1.202 17 H -0.202 1.202 18 H -0.198 1.198 19 C 0.025 3.975 20 C -0.207 4.207 21 C -0.199 4.199 22 S 0.619 5.381 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.168 0.832 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.113 3.820 1.860 4.250 hybrid contribution -0.216 1.047 -0.932 1.418 sum -0.329 4.867 0.928 4.965 Atomic orbital electron populations 1.20337 0.86604 1.03512 1.03058 1.25994 1.04028 1.03532 1.06617 1.19743 0.91341 0.99851 1.09452 1.19611 0.95718 0.92995 0.97932 1.20611 0.97134 0.95006 1.02538 1.24541 0.98079 0.98773 1.23726 1.17276 0.87285 0.82233 0.75846 1.90586 1.43476 1.58647 1.54432 1.48221 1.08588 1.06186 1.69485 1.19367 0.82682 0.89314 0.96985 1.21396 1.14362 1.28746 0.92379 0.93370 1.25273 0.96184 0.94889 0.99076 1.69961 1.22895 1.31569 1.29008 0.85919 0.78830 0.78265 0.81426 1.20176 1.20166 1.19786 1.21135 0.82697 0.96736 0.96911 1.22064 1.03014 1.00704 0.94914 1.21962 1.02407 0.98085 0.97467 1.86007 0.90978 0.99340 1.61780 0.90379 0.91634 0.89188 0.83235 0.91028 0.89943 0.91344 0.93929 0.94769 0.91916 0.89919 0.92685 0.88941 0.93382 0.94419 0.89548 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 10.31 71.24 0.73 -1.36 16 2 C -0.28 -9.92 6.28 24.68 0.15 -9.77 16 3 C -0.17 -5.93 9.82 21.08 0.21 -5.72 16 4 C -0.05 -1.75 5.90 -20.42 -0.12 -1.87 16 5 C -0.09 -3.16 9.67 71.24 0.69 -2.47 16 6 C -0.33 -14.49 6.23 24.08 0.15 -14.34 16 7 C 0.58 26.94 7.54 86.42 0.65 27.59 16 8 O -0.59 -28.10 13.57 -4.34 -0.06 -28.16 16 9 N -0.60 -26.00 2.38 -806.92 -1.92 -27.92 16 10 C 0.24 11.08 3.87 85.63 0.33 11.41 16 11 C -0.53 -25.79 6.14 25.60 0.16 -25.63 16 12 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 13 C 0.05 2.40 5.01 84.66 0.42 2.82 16 14 N -0.90 -44.56 13.29 21.45 0.28 -44.28 16 15 Si 0.93 39.64 29.54 68.60 2.03 41.67 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 19 C 0.13 4.73 3.22 44.99 0.14 4.88 16 20 C -0.15 -4.59 9.26 71.98 0.67 -3.93 16 21 C -0.14 -4.88 8.70 71.98 0.63 -4.25 16 22 S 0.34 14.44 15.79 -56.49 -0.89 13.55 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.07 2.63 5.84 -2.38 -0.01 2.61 16 30 H 0.04 2.04 6.45 -2.39 -0.02 2.02 16 31 H 0.04 1.70 4.53 -21.07 -0.10 1.60 16 32 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 33 H 0.08 3.16 6.91 -2.39 -0.02 3.14 16 34 H 0.05 1.77 6.93 -2.39 -0.02 1.76 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.13 7.10 -2.39 -0.02 2.12 16 Total: -1.00 -56.49 323.03 5.21 -51.27 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.95 Total: 16.50 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 4.82 Total: -22.64 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.63 Total: -72.20 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 16 Polarization: 14.44 SS G_CDS: -0.89 Total: 13.55 kcal Total: -56.49 5.21 -51.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601025813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.048 kcal (2) G-P(sol) polarization free energy of solvation -56.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds