Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.50705 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.52200 * 89.99626 * 4 3 2 6 6 C 1.37473 * 115.09827 * 179.72613 * 5 4 3 7 7 C 1.36644 * 113.29794 * 0.46010 * 6 5 4 8 8 C 1.46583 * 125.45465 * 179.83735 * 7 6 5 9 9 O 1.21695 * 120.00467 * 6.84054 * 8 7 6 10 10 N 1.34779 * 119.99596 * 186.84549 * 8 7 6 11 11 C 1.46501 * 120.00216 * 6.07624 * 10 8 7 12 12 C 1.46499 * 119.99800 * 186.08298 * 10 8 7 13 13 H 1.09000 * 109.47243 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.47321 * 119.99901 * 12 10 8 15 15 C 1.50707 * 109.47210 * 239.99698 * 12 10 8 16 16 H 1.08003 * 119.99217 * 359.97438 * 15 12 10 17 17 C 1.37870 * 120.00083 * 179.97438 * 15 12 10 18 18 N 1.31511 * 120.00477 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99566 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46944 * 90.00674 * 19 17 15 21 21 H 1.48510 * 109.46777 * 210.00345 * 19 17 15 22 22 H 1.48502 * 109.47345 * 330.00020 * 19 17 15 23 23 S 1.70616 * 124.52239 * 269.97693 * 4 3 2 24 24 H 1.09000 * 109.47214 * 60.00599 * 1 2 3 25 25 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47648 * 300.00367 * 1 2 3 27 27 H 1.08999 * 109.47195 * 239.99105 * 2 1 3 28 28 H 1.09002 * 109.46842 * 120.00077 * 2 1 3 29 29 H 1.08998 * 109.46947 * 59.99737 * 3 2 1 30 30 H 1.08999 * 109.46976 * 299.99392 * 3 2 1 31 31 H 1.08001 * 122.44882 * 359.96131 * 5 4 3 32 32 H 1.08001 * 123.34674 * 180.27164 * 6 5 4 33 33 H 1.08994 * 109.47551 * 275.93324 * 11 10 8 34 34 H 1.09004 * 109.46965 * 155.93320 * 11 10 8 35 35 H 1.08999 * 109.46883 * 35.93342 * 11 10 8 36 36 H 1.09007 * 109.46767 * 179.97438 * 14 12 10 37 37 H 1.08998 * 109.46963 * 299.99706 * 14 12 10 38 38 H 1.08993 * 109.47452 * 59.99949 * 14 12 10 39 39 H 0.96996 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3059 1.4422 -1.1016 6 6 5.6619 1.4482 -0.8759 7 6 5.9891 1.4433 0.4507 8 6 7.3519 1.4444 0.9904 9 8 8.3027 1.5755 0.2422 10 7 7.5521 1.3000 2.3154 11 6 6.4208 1.0092 3.1998 12 6 8.9008 1.4340 2.8714 13 1 9.6054 1.6482 2.0678 14 6 8.9224 2.5777 3.8874 15 6 9.2931 0.1487 3.5535 16 1 8.6061 -0.6845 3.5714 17 6 10.5288 0.0365 4.1545 18 7 11.3651 1.0512 4.1331 19 14 11.0151 -1.5571 4.9994 20 1 11.6858 -2.4510 4.0215 21 1 11.9457 -1.2602 6.1180 22 1 9.8006 -2.2266 5.5303 23 16 4.5133 1.4432 1.4068 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.8838 1.4414 -2.0957 32 1 6.3956 1.4531 -1.6685 33 1 5.9207 1.9398 3.4680 34 1 6.7827 0.5179 4.1030 35 1 5.7175 0.3536 2.6864 36 1 9.9259 2.6771 4.3014 37 1 8.6388 3.5074 3.3941 38 1 8.2179 2.3632 4.6910 39 1 12.2343 0.9724 4.5563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = -16.407119 kcal Electronic energy + Delta-G solvation = -19676.008983 eV Core-core repulsion = 16709.975994 eV Total energy + Delta-G solvation = -2966.032988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.18526 -37.82523 -35.40933 -34.86242 -32.93372 -30.54783 -29.32182 -26.77850 -26.21441 -25.22816 -23.72169 -21.89712 -21.57371 -19.61711 -18.17221 -17.41312 -16.44742 -15.73471 -15.60157 -15.03886 -14.77003 -14.67046 -14.05435 -13.82529 -13.30729 -12.96245 -12.80034 -12.58581 -12.54784 -12.22722 -12.11486 -11.65402 -11.61183 -11.54374 -11.34116 -11.06905 -10.94888 -10.88151 -10.73264 -10.31467 -10.22151 -10.17315 -9.26028 -9.11547 -8.47059 -8.44421 -8.32250 -7.62369 -6.08700 -4.16925 0.78640 1.70873 2.15075 2.64714 3.27099 3.33643 3.35067 3.80297 3.91460 4.38929 4.57367 4.74363 4.83158 5.12834 5.17839 5.22983 5.28961 5.45959 5.52346 5.55126 5.58953 5.67691 5.81977 5.84626 5.92184 6.04049 6.17861 6.25422 6.36354 6.57446 6.73347 6.81231 7.02783 7.36834 7.49787 7.68929 7.98766 8.16594 8.44309 8.79875 8.97621 9.49472 10.96758 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.004085 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.468609 B = 6852.529791 C = 7255.460469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.047 4.047 4 C -0.235 4.235 5 C -0.151 4.151 6 C -0.069 4.069 7 C -0.249 4.249 8 C 0.573 3.427 9 O -0.540 6.540 10 N -0.586 5.586 11 C 0.069 3.931 12 C 0.259 3.741 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 S 0.222 5.778 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.012 0.988 38 H 0.030 0.970 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.679 0.528 -4.854 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.086 4.086 4 C -0.354 4.354 5 C -0.181 4.181 6 C -0.102 4.102 7 C -0.369 4.369 8 C 0.359 3.641 9 O -0.420 6.420 10 N -0.317 5.317 11 C -0.077 4.077 12 C 0.159 3.841 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 S 0.491 5.509 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.166 0.834 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.298 0.666 -3.604 19.643 hybrid contribution 0.504 -0.871 -1.140 1.520 sum -18.794 -0.205 -4.744 19.385 Atomic orbital electron populations 1.21781 0.95569 1.01793 1.01816 1.21563 0.95642 0.95903 1.02787 1.20153 0.87817 0.97634 1.02964 1.24757 1.01236 1.08817 1.00550 1.19837 0.92619 1.06551 0.99129 1.20667 0.95975 0.98221 0.95339 1.24959 0.97365 1.16735 0.97857 1.17035 0.86163 0.78032 0.82831 1.90777 1.41844 1.51616 1.57759 1.48134 1.10863 1.67452 1.05202 1.21775 0.88815 1.00160 0.96907 1.19006 0.76719 0.94786 0.93552 0.91701 1.22106 1.03808 0.95794 0.98835 1.21310 1.01202 0.98460 1.35632 0.92161 1.24887 0.96077 0.96730 0.96007 1.69873 1.08235 1.30207 1.44208 0.86480 0.78442 0.83322 0.79057 1.20568 1.21100 1.19883 1.83592 0.93669 1.67711 1.05929 0.92720 0.92578 0.92647 0.91609 0.91646 0.90969 0.90450 0.84888 0.83422 0.93038 0.88245 0.92127 0.88632 0.96909 0.95045 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 3 C -0.05 -0.42 5.65 -27.88 -0.16 -0.58 16 4 C -0.24 -2.80 5.53 -35.86 -0.20 -3.00 16 5 C -0.15 -1.93 10.00 -41.41 -0.41 -2.34 16 6 C -0.07 -1.09 10.02 -40.44 -0.41 -1.49 16 7 C -0.25 -4.39 6.20 -36.79 -0.23 -4.62 16 8 C 0.57 12.79 7.62 -12.89 -0.10 12.69 16 9 O -0.54 -14.06 16.19 5.19 0.08 -13.98 16 10 N -0.59 -12.97 2.75 -176.84 -0.49 -13.46 16 11 C 0.07 1.20 7.76 59.85 0.46 1.67 16 12 C 0.26 6.69 2.62 -69.08 -0.18 6.51 16 13 H 0.07 1.94 6.91 -51.93 -0.36 1.58 16 14 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 15 C -0.53 -14.29 7.95 -34.44 -0.27 -14.56 16 16 H 0.06 1.60 7.43 -52.48 -0.39 1.21 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 S 0.22 2.97 17.85 -107.50 -1.92 1.05 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.05 0.78 7.48 -51.93 -0.39 0.39 16 34 H 0.10 1.78 7.12 -51.93 -0.37 1.41 16 35 H 0.06 0.94 5.15 -27.78 -0.14 0.79 16 36 H 0.10 2.50 6.07 -51.92 -0.32 2.18 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -30.87 329.82 -8.51 -39.39 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.73 Total: -0.50 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.04 Total: -9.01 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.14 Total: -37.89 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.92 Total: 1.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.87 -8.51 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds