Wall clock time and date at job start Tue Mar 31 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.50705 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.52200 * 89.99626 * 4 3 2 6 6 C 1.37473 * 115.09827 * 179.72613 * 5 4 3 7 7 C 1.36644 * 113.29794 * 0.46010 * 6 5 4 8 8 C 1.46583 * 125.45465 * 179.83735 * 7 6 5 9 9 O 1.21695 * 120.00467 * 6.84054 * 8 7 6 10 10 N 1.34779 * 119.99596 * 186.84549 * 8 7 6 11 11 C 1.46501 * 120.00216 * 6.07624 * 10 8 7 12 12 C 1.46499 * 119.99800 * 186.08298 * 10 8 7 13 13 H 1.09000 * 109.47243 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.47321 * 119.99901 * 12 10 8 15 15 C 1.50707 * 109.47210 * 239.99698 * 12 10 8 16 16 H 1.08003 * 119.99217 * 359.97438 * 15 12 10 17 17 C 1.37870 * 120.00083 * 179.97438 * 15 12 10 18 18 N 1.31511 * 120.00477 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99566 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46944 * 90.00674 * 19 17 15 21 21 H 1.48510 * 109.46777 * 210.00345 * 19 17 15 22 22 H 1.48502 * 109.47345 * 330.00020 * 19 17 15 23 23 S 1.70616 * 124.52239 * 269.97693 * 4 3 2 24 24 H 1.09000 * 109.47214 * 60.00599 * 1 2 3 25 25 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47648 * 300.00367 * 1 2 3 27 27 H 1.08999 * 109.47195 * 239.99105 * 2 1 3 28 28 H 1.09002 * 109.46842 * 120.00077 * 2 1 3 29 29 H 1.08998 * 109.46947 * 59.99737 * 3 2 1 30 30 H 1.08999 * 109.46976 * 299.99392 * 3 2 1 31 31 H 1.08001 * 122.44882 * 359.96131 * 5 4 3 32 32 H 1.08001 * 123.34674 * 180.27164 * 6 5 4 33 33 H 1.08994 * 109.47551 * 275.93324 * 11 10 8 34 34 H 1.09004 * 109.46965 * 155.93320 * 11 10 8 35 35 H 1.08999 * 109.46883 * 35.93342 * 11 10 8 36 36 H 1.09007 * 109.46767 * 179.97438 * 14 12 10 37 37 H 1.08998 * 109.46963 * 299.99706 * 14 12 10 38 38 H 1.08993 * 109.47452 * 59.99949 * 14 12 10 39 39 H 0.96996 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3059 1.4422 -1.1016 6 6 5.6619 1.4482 -0.8759 7 6 5.9891 1.4433 0.4507 8 6 7.3519 1.4444 0.9904 9 8 8.3027 1.5755 0.2422 10 7 7.5521 1.3000 2.3154 11 6 6.4208 1.0092 3.1998 12 6 8.9008 1.4340 2.8714 13 1 9.6054 1.6482 2.0678 14 6 8.9224 2.5777 3.8874 15 6 9.2931 0.1487 3.5535 16 1 8.6061 -0.6845 3.5714 17 6 10.5288 0.0365 4.1545 18 7 11.3651 1.0512 4.1331 19 14 11.0151 -1.5571 4.9994 20 1 11.6858 -2.4510 4.0215 21 1 11.9457 -1.2602 6.1180 22 1 9.8006 -2.2266 5.5303 23 16 4.5133 1.4432 1.4068 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.8838 1.4414 -2.0957 32 1 6.3956 1.4531 -1.6685 33 1 5.9207 1.9398 3.4680 34 1 6.7827 0.5179 4.1030 35 1 5.7175 0.3536 2.6864 36 1 9.9259 2.6771 4.3014 37 1 8.6388 3.5074 3.3941 38 1 8.2179 2.3632 4.6910 39 1 12.2343 0.9724 4.5563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:53 Heat of formation + Delta-G solvation = -33.995418 kcal Electronic energy + Delta-G solvation = -19676.771669 eV Core-core repulsion = 16709.975994 eV Total energy + Delta-G solvation = -2966.795674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84314 -38.96190 -37.17852 -35.73075 -34.87883 -32.02415 -30.71944 -28.06995 -27.57147 -27.28984 -24.79271 -23.41943 -22.28026 -21.25955 -19.45539 -18.96079 -18.38195 -17.33438 -16.85950 -16.48583 -16.30133 -15.79185 -15.43430 -14.77329 -14.53732 -14.45058 -14.17623 -14.10252 -13.84880 -13.53118 -13.30390 -13.19511 -12.95194 -12.78739 -12.74136 -12.63124 -12.29186 -12.23224 -12.10971 -12.02380 -11.62211 -11.32239 -11.24012 -10.91276 -10.54184 -9.75779 -9.45185 -9.25492 -8.16422 -6.33476 -0.42516 0.54076 1.04672 1.41209 1.43115 1.46181 1.53164 2.18305 2.29575 2.45054 3.11827 3.67090 3.77920 4.11446 4.18491 4.21642 4.35010 4.47935 4.49779 4.67049 4.70644 4.77378 4.86247 4.87561 4.89495 5.00403 5.01167 5.09628 5.21508 5.27302 5.34117 5.43538 5.48101 5.51212 5.55061 5.63012 5.99000 6.12467 6.66487 6.73206 7.20388 7.39877 8.88404 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.004085 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.468609 B = 6852.529791 C = 7255.460469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.048 4.048 4 C -0.210 4.210 5 C -0.161 4.161 6 C -0.061 4.061 7 C -0.303 4.303 8 C 0.564 3.436 9 O -0.599 6.599 10 N -0.594 5.594 11 C 0.066 3.934 12 C 0.263 3.737 13 H 0.009 0.991 14 C -0.132 4.132 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.259 1.259 23 S 0.267 5.733 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.051 0.949 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.275 -0.195 -4.258 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.087 4.087 4 C -0.329 4.329 5 C -0.190 4.190 6 C -0.095 4.095 7 C -0.423 4.423 8 C 0.354 3.646 9 O -0.483 6.483 10 N -0.323 5.323 11 C -0.078 4.078 12 C 0.161 3.839 13 H 0.027 0.973 14 C -0.191 4.191 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.791 3.209 20 H -0.210 1.210 21 H -0.203 1.203 22 H -0.183 1.183 23 S 0.537 5.463 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.179 0.821 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.940 -0.058 -2.975 23.132 hybrid contribution 1.489 -0.622 -1.413 2.145 sum -21.451 -0.680 -4.388 21.905 Atomic orbital electron populations 1.21759 0.94186 1.02262 1.02510 1.21558 0.96834 0.95096 1.02374 1.20346 0.85115 0.98559 1.04668 1.25228 1.02894 1.05306 0.99507 1.19985 0.91056 1.07043 1.00896 1.20860 0.97471 0.96660 0.94531 1.24550 0.96827 1.21474 0.99472 1.17685 0.87739 0.76766 0.82433 1.90718 1.44338 1.54263 1.58985 1.48098 1.10720 1.67512 1.06000 1.22012 0.87751 1.01960 0.96061 1.18626 0.78022 0.95236 0.91988 0.97302 1.21890 1.02913 0.95485 0.98781 1.21558 1.01707 0.98960 1.35792 0.92021 1.25743 0.95956 1.00020 0.96621 1.70014 1.08545 1.32158 1.44817 0.85429 0.78498 0.79062 0.77873 1.20976 1.20342 1.18346 1.83185 0.90857 1.66781 1.05491 0.91958 0.92309 0.92052 0.91994 0.92227 0.89502 0.88576 0.82077 0.84474 0.90400 0.88692 0.90044 0.91014 0.96104 0.93007 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 3 C -0.05 -0.64 5.65 29.85 0.17 -0.47 16 4 C -0.21 -4.29 5.53 24.68 0.14 -4.15 16 5 C -0.16 -3.69 10.00 21.08 0.21 -3.48 16 6 C -0.06 -1.89 10.02 21.72 0.22 -1.68 16 7 C -0.30 -10.73 6.20 24.08 0.15 -10.58 16 8 C 0.56 26.33 7.62 86.42 0.66 26.99 16 9 O -0.60 -33.55 16.19 -4.33 -0.07 -33.62 16 10 N -0.59 -27.00 2.75 -831.61 -2.29 -29.29 16 11 C 0.07 2.22 7.76 127.77 0.99 3.22 16 12 C 0.26 14.17 2.62 44.25 0.12 14.29 16 13 H 0.01 0.58 6.91 -2.39 -0.02 0.56 16 14 C -0.13 -6.48 8.97 71.98 0.65 -5.83 16 15 C -0.54 -30.04 7.95 25.60 0.20 -29.83 16 16 H 0.06 3.31 7.43 -2.91 -0.02 3.29 16 17 C 0.02 0.91 5.30 84.65 0.45 1.36 16 18 N -0.92 -53.32 11.32 21.44 0.24 -53.08 16 19 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 S 0.27 6.47 17.85 -56.49 -1.01 5.47 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.08 2.19 7.48 -2.39 -0.02 2.18 16 34 H 0.09 3.28 7.12 -2.38 -0.02 3.27 16 35 H 0.08 2.38 5.15 -17.74 -0.09 2.28 16 36 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 2.26 7.67 -2.39 -0.02 2.24 16 39 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -71.06 329.82 4.69 -66.36 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.95 Total: 11.07 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.84 Total: -12.24 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.05 Total: -82.36 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.07 Total: -33.62 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.01 Total: 5.47 kcal Total: -71.06 4.69 -66.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.365 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds