Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00233 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47008 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47283 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99680 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99526 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00279 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47015 * 90.00295 * 18 16 14 20 20 H 1.48499 * 109.47394 * 209.99904 * 18 16 14 21 21 H 1.48502 * 109.47241 * 330.00375 * 18 16 14 22 22 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 23 23 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 27 27 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 28 28 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 30 30 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 31 31 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 32 32 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47124 * 299.99869 * 11 10 8 34 34 H 1.09002 * 109.46842 * 60.00015 * 11 10 8 35 35 H 1.09004 * 109.47681 * 300.00097 * 12 11 10 36 36 H 1.09002 * 109.47015 * 60.00478 * 12 11 10 37 37 H 1.08996 * 109.47178 * 300.00342 * 13 12 11 38 38 H 1.09005 * 109.47369 * 60.00406 * 13 12 11 39 39 H 0.96997 * 119.99690 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 6 8.9108 1.4409 2.8632 12 6 8.8538 1.4423 4.3921 13 6 10.2762 1.4411 4.9555 14 6 10.2201 1.4417 6.4615 15 1 9.2654 1.4425 6.9662 16 6 11.3878 1.4414 7.1948 17 7 11.3387 1.4425 8.5090 18 14 13.0391 1.4393 6.3217 19 1 13.4779 2.8389 6.0893 20 1 14.0429 0.7392 7.1628 21 1 12.9094 0.7384 5.0189 22 16 4.5134 1.4419 1.4068 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8838 1.4322 -2.0957 31 1 6.3957 1.4406 -1.6686 32 1 6.7884 1.4422 2.9262 33 1 9.4373 0.5505 2.5196 34 1 9.4383 2.3305 2.5188 35 1 8.3274 2.3329 4.7354 36 1 8.3262 0.5529 4.7368 37 1 10.8022 0.5502 4.6122 38 1 10.8043 2.3302 4.6109 39 1 12.1601 1.4419 9.0249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = -38.426997 kcal Electronic energy + Delta-G solvation = -18400.237380 eV Core-core repulsion = 15433.249539 eV Total energy + Delta-G solvation = -2966.987842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.69098 -38.20700 -35.61652 -35.16030 -33.35025 -31.60927 -30.58540 -27.94884 -26.50168 -24.15177 -22.96323 -21.86342 -21.24709 -20.53460 -19.20115 -17.99121 -16.85871 -16.31914 -15.74282 -15.49082 -15.30527 -14.90165 -14.35218 -14.17282 -13.96763 -13.75570 -13.40677 -12.93842 -12.74252 -12.65455 -12.15605 -12.04810 -11.93711 -11.83775 -11.59826 -11.26658 -11.11220 -11.00838 -10.90433 -10.29354 -10.01518 -9.82061 -9.66328 -9.23632 -9.06936 -8.83487 -8.76139 -8.55931 -6.06739 -4.05474 0.30428 1.22134 1.64912 2.19314 3.20584 3.23704 3.31236 3.38845 3.43093 4.24854 4.44137 4.51242 4.60000 4.79278 4.89618 5.04508 5.12078 5.25874 5.27318 5.34027 5.35433 5.50575 5.62272 5.63022 5.65892 5.79119 5.84072 5.93844 5.99112 6.13621 6.28118 6.42200 6.64846 6.76420 7.21493 7.35043 7.52355 7.75493 8.19716 8.49810 8.97053 9.55447 11.06479 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030899 B = 0.002756 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.960636 B =10158.615275 C =10922.653024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.195 4.195 5 C -0.153 4.153 6 C -0.056 4.056 7 C -0.263 4.263 8 C 0.585 3.415 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.115 3.885 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 S 0.203 5.797 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.439 -0.860 -19.060 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.314 4.314 5 C -0.184 4.184 6 C -0.089 4.089 7 C -0.384 4.384 8 C 0.370 3.630 9 O -0.413 6.413 10 N -0.371 5.371 11 C -0.008 4.008 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 S 0.471 5.529 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.917 -0.858 -17.845 27.508 hybrid contribution 0.851 0.033 -1.588 1.802 sum -20.067 -0.825 -19.433 27.946 Atomic orbital electron populations 1.21780 0.95259 1.02028 1.01975 1.21573 0.95999 0.95483 1.02878 1.20259 0.87069 0.98138 1.03611 1.24255 1.01132 1.08192 0.97848 1.19942 0.92566 1.06335 0.99530 1.20744 0.96144 0.96782 0.95221 1.24691 0.97019 1.18531 0.98114 1.16986 0.86652 0.76791 0.82558 1.90822 1.41810 1.50500 1.58152 1.46067 1.10447 1.74697 1.05934 1.21718 0.81161 1.02260 0.95641 1.21725 1.01263 1.01856 0.90382 1.19505 0.91550 0.96726 0.97112 1.21090 0.94673 1.51119 0.89120 0.90985 1.25031 0.99272 0.94467 0.94735 1.69911 1.28139 1.50977 1.05133 0.86773 0.83799 0.78598 0.80114 1.20236 1.21362 1.18890 1.83069 0.94259 1.67998 1.07553 0.92522 0.92596 0.92398 0.91477 0.91573 0.90514 0.89797 0.83968 0.83017 0.76925 0.91429 0.91437 0.92016 0.92000 0.96245 0.96678 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.15 0.37 -0.36 16 2 C -0.12 -0.70 5.92 -26.74 -0.16 -0.86 16 3 C -0.05 -0.31 5.64 -27.88 -0.16 -0.47 16 4 C -0.19 -1.64 5.53 -35.86 -0.20 -1.84 16 5 C -0.15 -1.36 10.00 -41.41 -0.41 -1.77 16 6 C -0.06 -0.62 10.01 -40.43 -0.40 -1.03 16 7 C -0.26 -3.30 6.45 -36.79 -0.24 -3.54 16 8 C 0.58 9.14 7.78 -12.90 -0.10 9.04 16 9 O -0.53 -10.16 16.84 5.19 0.09 -10.07 16 10 N -0.72 -10.64 5.55 -61.66 -0.34 -10.98 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 12 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 18 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 22 S 0.20 1.93 22.10 -107.50 -2.38 -0.44 16 23 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.40 4.94 7.59 -40.82 -0.31 4.63 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 38 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -32.58 342.37 -9.53 -42.11 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.16 Total: -1.13 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.01 Total: -14.78 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.43 Total: -37.95 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.58 -9.53 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.684 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds