Wall clock time and date at job start Tue Mar 31 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00233 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47008 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47283 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99680 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99526 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00279 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47015 * 90.00295 * 18 16 14 20 20 H 1.48499 * 109.47394 * 209.99904 * 18 16 14 21 21 H 1.48502 * 109.47241 * 330.00375 * 18 16 14 22 22 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 23 23 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 27 27 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 28 28 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 30 30 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 31 31 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 32 32 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47124 * 299.99869 * 11 10 8 34 34 H 1.09002 * 109.46842 * 60.00015 * 11 10 8 35 35 H 1.09004 * 109.47681 * 300.00097 * 12 11 10 36 36 H 1.09002 * 109.47015 * 60.00478 * 12 11 10 37 37 H 1.08996 * 109.47178 * 300.00342 * 13 12 11 38 38 H 1.09005 * 109.47369 * 60.00406 * 13 12 11 39 39 H 0.96997 * 119.99690 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 6 8.9108 1.4409 2.8632 12 6 8.8538 1.4423 4.3921 13 6 10.2762 1.4411 4.9555 14 6 10.2201 1.4417 6.4615 15 1 9.2654 1.4425 6.9662 16 6 11.3878 1.4414 7.1948 17 7 11.3387 1.4425 8.5090 18 14 13.0391 1.4393 6.3217 19 1 13.4779 2.8389 6.0893 20 1 14.0429 0.7392 7.1628 21 1 12.9094 0.7384 5.0189 22 16 4.5134 1.4419 1.4068 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8838 1.4322 -2.0957 31 1 6.3957 1.4406 -1.6686 32 1 6.7884 1.4422 2.9262 33 1 9.4373 0.5505 2.5196 34 1 9.4383 2.3305 2.5188 35 1 8.3274 2.3329 4.7354 36 1 8.3262 0.5529 4.7368 37 1 10.8022 0.5502 4.6122 38 1 10.8043 2.3302 4.6109 39 1 12.1601 1.4419 9.0249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:36 Heat of formation + Delta-G solvation = -58.119871 kcal Electronic energy + Delta-G solvation = -18401.091328 eV Core-core repulsion = 15433.249539 eV Total energy + Delta-G solvation = -2967.841789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86604 -38.99864 -37.04810 -35.76515 -35.19775 -33.40242 -31.38219 -29.33322 -27.59849 -25.12513 -24.31822 -22.42844 -22.33549 -22.16242 -20.23210 -19.00941 -18.84870 -17.29090 -16.86355 -16.82697 -16.29679 -15.88001 -15.64214 -15.59667 -14.79689 -14.78016 -14.64967 -14.16390 -13.84476 -13.74094 -13.54950 -13.30114 -12.78441 -12.73488 -12.71947 -12.36961 -12.07224 -11.97447 -11.90126 -11.79473 -11.62436 -11.51189 -11.34915 -11.18804 -10.76518 -10.29742 -9.65505 -9.55726 -8.29669 -6.33572 -0.54185 0.43103 0.88292 1.35950 1.36885 1.38505 1.50329 2.05957 2.12046 2.36174 3.06014 3.65688 3.76488 4.05458 4.07044 4.15751 4.16729 4.28974 4.41483 4.46174 4.62209 4.72874 4.83428 4.84814 4.85585 4.97066 5.00373 5.04098 5.15303 5.23802 5.26633 5.29673 5.42002 5.44805 5.46476 5.53339 5.64148 6.26859 6.36716 6.74217 7.02134 7.31106 8.86708 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030899 B = 0.002756 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.960636 B =10158.615275 C =10922.653024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.052 4.052 4 C -0.180 4.180 5 C -0.160 4.160 6 C -0.051 4.051 7 C -0.303 4.303 8 C 0.584 3.416 9 O -0.577 6.577 10 N -0.715 5.715 11 C 0.126 3.874 12 C -0.102 4.102 13 C -0.012 4.012 14 C -0.531 4.531 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.248 1.248 22 S 0.225 5.775 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.168 0.832 31 H 0.149 0.851 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.791 -0.765 -20.957 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.300 4.300 5 C -0.190 4.190 6 C -0.085 4.085 7 C -0.423 4.423 8 C 0.372 3.628 9 O -0.459 6.459 10 N -0.366 5.366 11 C 0.003 3.997 12 C -0.140 4.140 13 C -0.050 4.050 14 C -0.569 4.569 15 H 0.056 0.944 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.171 1.171 22 S 0.494 5.506 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.186 0.814 31 H 0.166 0.834 32 H 0.244 0.756 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.309 -0.764 -19.732 29.793 hybrid contribution 1.089 -0.002 -0.972 1.460 sum -21.220 -0.765 -20.705 29.657 Atomic orbital electron populations 1.21768 0.94370 1.02275 1.02490 1.21558 0.96749 0.95047 1.02476 1.20401 0.85132 0.98655 1.04924 1.24668 1.02355 1.05799 0.97167 1.20123 0.91465 1.06428 1.00939 1.20949 0.97329 0.95529 0.94704 1.24458 0.96623 1.22007 0.99254 1.17367 0.87595 0.75620 0.82189 1.90785 1.43512 1.52621 1.58989 1.45900 1.09989 1.74534 1.06177 1.21404 0.82355 1.01893 0.94053 1.21504 0.98587 1.02286 0.91574 1.19465 0.94517 0.96952 0.94039 1.21449 0.93378 1.50298 0.91732 0.94384 1.25987 1.03645 0.94223 0.95410 1.70056 1.29392 1.52646 1.06944 0.85695 0.78564 0.79199 0.79440 1.19229 1.21004 1.17135 1.82963 0.92687 1.67478 1.07508 0.92285 0.91820 0.92347 0.91576 0.92365 0.89674 0.88041 0.81444 0.83359 0.75576 0.91913 0.91836 0.91611 0.91649 0.95958 0.96056 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.08 5.92 30.59 0.18 -0.90 16 3 C -0.05 -0.47 5.64 29.85 0.17 -0.30 16 4 C -0.18 -2.57 5.53 24.68 0.14 -2.44 16 5 C -0.16 -2.46 10.00 21.08 0.21 -2.25 16 6 C -0.05 -1.08 10.01 21.72 0.22 -0.86 16 7 C -0.30 -7.39 6.45 24.07 0.16 -7.24 16 8 C 0.58 18.21 7.78 86.42 0.67 18.88 16 9 O -0.58 -22.23 16.84 -4.34 -0.07 -22.30 16 10 N -0.72 -20.70 5.55 -467.19 -2.59 -23.29 16 11 C 0.13 4.18 5.67 86.38 0.49 4.67 16 12 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 13 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 14 C -0.53 -30.24 9.66 25.60 0.25 -29.99 16 15 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 16 C 0.00 0.25 5.47 84.66 0.46 0.71 16 17 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 18 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 22 S 0.22 3.91 22.10 -56.49 -1.25 2.66 16 23 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 32 H 0.41 9.80 7.59 -92.70 -0.70 9.10 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 38 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -70.80 342.37 2.48 -68.32 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.27 Total: 11.42 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 3.94 Total: -24.08 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.29 Total: -82.47 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.66 kcal Total: -70.80 2.48 -68.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.201 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds