Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 C 1.50693 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.33823 * 124.52455 * 89.99969 * 4 3 2 6 6 C 1.37470 * 115.10540 * 179.72330 * 5 4 3 7 7 C 1.36657 * 113.29392 * 0.45909 * 6 5 4 8 8 C 1.46583 * 125.45392 * 179.83454 * 7 6 5 9 9 O 1.21694 * 120.00071 * 359.72072 * 8 7 6 10 10 N 1.34776 * 119.99673 * 179.71744 * 8 7 6 11 11 C 1.46502 * 120.00080 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46581 * 35.00344 * 11 10 8 13 13 C 1.50700 * 109.46969 * 154.99546 * 11 10 8 14 14 H 1.07998 * 120.00370 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99824 * 180.02562 * 13 11 10 16 16 N 1.31523 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99983 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47402 * 60.00067 * 17 15 13 19 19 H 1.48504 * 109.47024 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46769 * 299.99484 * 17 15 13 21 21 C 1.52992 * 109.47005 * 275.00208 * 11 10 8 22 22 C 1.52997 * 109.47482 * 64.99872 * 21 11 10 23 23 S 1.70622 * 124.52633 * 269.97785 * 4 3 2 24 24 H 1.08997 * 109.47314 * 59.99920 * 1 2 3 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47531 * 299.99855 * 1 2 3 27 27 H 1.09006 * 109.47505 * 239.99913 * 2 1 3 28 28 H 1.09002 * 109.46866 * 120.00207 * 2 1 3 29 29 H 1.08998 * 109.46786 * 60.00247 * 3 2 1 30 30 H 1.08997 * 109.47097 * 300.00212 * 3 2 1 31 31 H 1.08003 * 122.44163 * 359.95899 * 5 4 3 32 32 H 1.07998 * 123.35382 * 180.26993 * 6 5 4 33 33 H 0.97001 * 120.00217 * 359.97438 * 10 8 7 34 34 H 0.96993 * 119.99651 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47103 * 304.99625 * 21 11 10 36 36 H 1.08998 * 109.46862 * 185.00437 * 21 11 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 22 21 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 22 21 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.3058 1.4423 -1.1016 6 6 5.6619 1.4484 -0.8760 7 6 5.9890 1.4434 0.4508 8 6 7.3519 1.4445 0.9904 9 8 8.3056 1.4450 0.2346 10 7 7.5487 1.4450 2.3237 11 6 8.9107 1.4466 2.8632 12 1 9.5578 2.0367 2.2142 13 6 8.9029 2.0474 4.2452 14 1 7.9761 2.3931 4.6786 15 6 10.0791 2.1559 4.9564 16 7 11.2080 1.7354 4.4285 17 14 10.0694 2.9000 6.6698 18 1 9.1885 2.0954 7.5540 19 1 11.4503 2.9028 7.2161 20 1 9.5620 4.2938 6.6011 21 6 9.4328 0.0102 2.9343 22 6 9.5586 -0.5574 1.5191 23 16 4.5133 1.4433 1.4067 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.8836 1.4415 -2.0957 32 1 6.3956 1.4532 -1.6685 33 1 6.7884 1.4450 2.9262 34 1 12.0355 1.8120 4.9287 35 1 8.7379 -0.6008 3.5105 36 1 10.4099 0.0023 3.4172 37 1 10.2535 0.0536 0.9430 38 1 8.5814 -0.5495 1.0363 39 1 9.9309 -1.5806 1.5698 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601444968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = -32.256430 kcal Electronic energy + Delta-G solvation = -19455.673289 eV Core-core repulsion = 16488.953024 eV Total energy + Delta-G solvation = -2966.720266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.17015 -37.85419 -35.24930 -34.76385 -32.41655 -31.13864 -30.13109 -27.47096 -26.31518 -23.85159 -22.99052 -21.65556 -21.26760 -19.47779 -19.01796 -17.75949 -16.47914 -15.71034 -15.36158 -15.08026 -14.74655 -14.62875 -14.11294 -13.86524 -13.46103 -13.07229 -12.75252 -12.60780 -12.59422 -11.94116 -11.84303 -11.62533 -11.55289 -11.33879 -11.24364 -11.02753 -10.97571 -10.82116 -10.71736 -10.33548 -10.18000 -9.63446 -9.20296 -9.05582 -8.52210 -8.50515 -8.48036 -7.84562 -6.12503 -4.22189 0.71137 1.59749 2.02980 2.58353 3.26006 3.31193 3.32422 3.86779 4.05691 4.38116 4.50490 4.70560 4.78894 5.12787 5.18733 5.24078 5.38010 5.45224 5.51708 5.54496 5.61812 5.78635 5.87998 6.00593 6.11130 6.31088 6.40185 6.47273 6.48773 6.66798 7.05202 7.19658 7.34896 7.41309 7.61242 7.71879 7.89000 8.16870 8.61089 8.75556 9.05688 9.44743 10.92894 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.004020 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.723729 B = 6964.248996 C = 7646.703197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.048 4.048 4 C -0.208 4.208 5 C -0.149 4.149 6 C -0.071 4.071 7 C -0.244 4.244 8 C 0.572 3.428 9 O -0.536 6.536 10 N -0.702 5.702 11 C 0.271 3.729 12 H 0.052 0.948 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.128 4.128 22 C -0.138 4.138 23 S 0.195 5.805 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.385 0.615 34 H 0.265 0.735 35 H 0.031 0.969 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.342 -2.365 -7.345 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.087 4.087 4 C -0.328 4.328 5 C -0.180 4.180 6 C -0.104 4.104 7 C -0.365 4.365 8 C 0.356 3.644 9 O -0.416 6.416 10 N -0.349 5.349 11 C 0.170 3.830 12 H 0.070 0.930 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.519 5.519 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.166 4.166 22 C -0.196 4.196 23 S 0.463 5.537 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.218 0.782 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.712 -2.373 -6.238 18.927 hybrid contribution -0.043 0.371 -0.417 0.560 sum -17.755 -2.002 -6.655 19.067 Atomic orbital electron populations 1.21779 0.95481 1.01848 1.01868 1.21573 0.95743 0.95778 1.02837 1.20191 0.87446 0.97828 1.03262 1.24164 1.00820 1.09693 0.98085 1.19897 0.92694 1.06196 0.99224 1.20701 0.95932 0.98340 0.95386 1.25071 0.97601 1.15962 0.97835 1.16960 0.85970 0.77908 0.83514 1.90792 1.41312 1.51221 1.58306 1.46453 1.11760 1.71941 1.04729 1.18841 0.76763 0.93668 0.93751 0.93049 1.21186 0.94522 1.41594 1.00163 0.92107 1.24879 0.95216 0.95107 0.98377 1.69886 0.98610 1.45668 1.37743 0.86504 0.77190 0.79708 0.83694 1.20111 1.21108 1.20147 1.21940 1.03561 0.96673 0.94471 1.21851 1.00601 0.98165 0.98964 1.83048 0.94726 1.68219 1.07698 0.92672 0.92536 0.92614 0.91539 0.91616 0.90769 0.90102 0.84397 0.83228 0.78231 0.92461 0.94967 0.88137 0.93082 0.94299 0.95744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 3 C -0.05 -0.41 5.65 -27.88 -0.16 -0.57 16 4 C -0.21 -2.39 5.53 -35.86 -0.20 -2.59 16 5 C -0.15 -1.80 9.99 -41.41 -0.41 -2.21 16 6 C -0.07 -1.06 10.01 -40.43 -0.40 -1.46 16 7 C -0.24 -4.13 6.45 -36.79 -0.24 -4.36 16 8 C 0.57 12.07 6.35 -12.90 -0.08 11.99 16 9 O -0.54 -12.94 13.97 5.19 0.07 -12.87 16 10 N -0.70 -15.21 5.02 -56.28 -0.28 -15.49 16 11 C 0.27 6.92 2.24 -69.08 -0.15 6.77 16 12 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 13 C -0.54 -14.26 8.73 -34.44 -0.30 -14.56 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 16 N -0.88 -24.70 11.30 55.43 0.63 -24.07 16 17 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 C -0.13 -3.14 5.45 -26.74 -0.15 -3.29 16 22 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 23 S 0.20 2.59 22.10 -107.50 -2.38 0.21 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.39 7.46 7.65 -40.82 -0.31 7.14 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 37 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 38 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -29.63 333.39 -9.53 -39.15 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.91 Total: 5.58 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.66 Total: -13.12 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.34 Total: -39.56 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.38 Total: 0.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.63 -9.53 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.897 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds