Wall clock time and date at job start Tue Mar 31 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 124.51986 * 2 1 4 4 C 1.37477 * 115.09687 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47376 * 299.99712 * 11 10 9 13 13 C 1.53001 * 109.47408 * 59.99751 * 11 10 9 14 14 C 1.50707 * 109.46965 * 180.02562 * 11 10 9 15 15 H 1.07990 * 119.99948 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99741 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00489 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99657 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47237 * 89.99851 * 18 16 14 20 20 H 1.48506 * 109.47090 * 209.99703 * 18 16 14 21 21 H 1.48502 * 109.47023 * 329.99394 * 18 16 14 22 22 S 1.70619 * 124.52256 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46870 * 89.99852 * 1 2 3 24 24 H 1.09002 * 109.47428 * 210.00095 * 1 2 3 25 25 H 1.09003 * 109.47368 * 330.00270 * 1 2 3 26 26 H 1.07996 * 122.45496 * 0.04065 * 3 2 1 27 27 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 29 29 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 30 30 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 32 32 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 33 33 H 1.09000 * 109.46522 * 60.00041 * 12 11 10 34 34 H 1.08991 * 109.47353 * 180.02562 * 12 11 10 35 35 H 1.09003 * 109.47177 * 300.00673 * 12 11 10 36 36 H 1.09005 * 109.46947 * 59.99924 * 13 11 10 37 37 H 1.09000 * 109.47028 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47407 * 300.00037 * 13 11 10 39 39 H 0.97000 * 120.00560 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9882 -0.0134 8 8 6.2658 -0.2320 -0.0153 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8603 -0.0257 11 6 6.8155 -4.3893 -0.0290 12 6 6.0820 -4.8753 1.2227 13 6 6.0699 -4.8695 -1.2757 14 6 8.2168 -4.9437 -0.0364 15 1 9.0629 -4.2726 -0.0389 16 6 8.4186 -6.3076 -0.0409 17 7 7.3882 -7.1248 -0.0383 18 14 10.1556 -6.9947 -0.0508 19 1 10.6225 -7.1804 1.3466 20 1 10.1667 -8.3025 -0.7543 21 1 11.0586 -6.0474 -0.7527 22 16 2.4740 -1.4057 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.8429 2.0965 0.0006 27 1 4.8925 2.2503 1.0263 28 1 4.2380 2.8549 -0.5146 29 1 5.5446 1.6461 -0.5158 30 1 4.7495 -2.9242 -0.0161 31 1 7.3945 -2.5138 -0.9172 32 1 7.4029 -2.5187 0.8627 33 1 5.0684 -4.4744 1.2285 34 1 6.0422 -5.9645 1.2206 35 1 6.6131 -4.5332 2.1109 36 1 6.5924 -4.5233 -2.1675 37 1 6.0301 -5.9588 -1.2783 38 1 5.0563 -4.4686 -1.2700 39 1 7.5301 -8.0844 -0.0412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601630897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:16 Heat of formation + Delta-G solvation = -40.093312 kcal Electronic energy + Delta-G solvation = -19800.340921 eV Core-core repulsion = 16833.280822 eV Total energy + Delta-G solvation = -2967.060099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96338 -39.18439 -37.99496 -35.06454 -33.61499 -32.79600 -29.55603 -28.63096 -27.60657 -27.39571 -26.32620 -22.99518 -22.52486 -20.77548 -20.03310 -18.72618 -17.83023 -17.19633 -16.52472 -16.44947 -16.44054 -15.46083 -15.20682 -14.84533 -14.66688 -14.47997 -14.11265 -13.95382 -13.92752 -13.70547 -13.22819 -13.12738 -12.78746 -12.71612 -12.61370 -12.58489 -12.51056 -12.28118 -12.14123 -11.77065 -11.52328 -11.29331 -10.92015 -10.72143 -10.41443 -10.10801 -9.55344 -9.38874 -8.02934 -6.19016 -0.48761 0.48521 0.92428 1.38567 1.43006 1.45638 1.54077 2.16951 2.23035 2.48511 3.20683 3.78825 3.85047 4.22118 4.25961 4.40710 4.46861 4.56826 4.65134 4.68156 4.75394 4.79194 4.93711 5.00910 5.01158 5.06786 5.09659 5.15108 5.18928 5.29767 5.42350 5.49128 5.58002 5.63294 5.66068 6.10544 6.17617 6.40893 6.53294 6.84281 7.16286 7.48687 8.96391 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.004021 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.542977 B = 6961.655662 C = 7649.523157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.179 4.179 3 C -0.165 4.165 4 C -0.019 4.019 5 C -0.104 4.104 6 C -0.314 4.314 7 C 0.578 3.422 8 O -0.572 6.572 9 N -0.710 5.710 10 C 0.149 3.851 11 C 0.050 3.950 12 C -0.120 4.120 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.046 0.954 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.947 3.053 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.276 1.276 22 S 0.203 5.797 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.171 0.829 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.402 0.598 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.342 13.125 0.061 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.299 4.299 3 C -0.194 4.194 4 C -0.035 4.035 5 C -0.162 4.162 6 C -0.433 4.433 7 C 0.367 3.633 8 O -0.455 6.455 9 N -0.361 5.361 10 C 0.025 3.975 11 C 0.049 3.951 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.568 4.568 15 H 0.064 0.936 16 C -0.171 4.171 17 N -0.538 5.538 18 Si 0.774 3.226 19 H -0.205 1.205 20 H -0.208 1.208 21 H -0.201 1.201 22 S 0.472 5.528 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.189 0.811 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.239 0.761 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.020 11.828 0.057 19.914 hybrid contribution 1.360 0.583 0.016 1.480 sum -14.660 12.411 0.073 19.208 Atomic orbital electron populations 1.20572 0.84686 1.04841 1.04373 1.24689 1.03060 0.96854 1.05297 1.20029 0.90881 1.01092 1.07441 1.19800 0.96112 0.92935 0.94642 1.20712 0.97068 0.95350 1.03064 1.24306 0.96681 0.98735 1.23602 1.17406 0.87650 0.82256 0.76014 1.90707 1.43451 1.58443 1.52881 1.46055 1.10153 1.05965 1.73895 1.21352 0.81173 0.95637 0.99322 1.18384 0.95237 0.87973 0.93490 1.21676 0.96323 1.02965 0.96863 1.21674 0.96308 1.02966 0.96884 1.21238 0.92051 0.91981 1.51495 0.93569 1.25458 0.99908 0.97156 0.94559 1.69903 1.30291 1.03028 1.50535 0.85729 0.81202 0.77680 0.78008 1.20461 1.20756 1.20059 1.83043 0.93176 1.07932 1.68679 0.88943 0.90194 0.88384 0.81120 0.90580 0.88986 0.91664 0.76130 0.93912 0.93897 0.95027 0.91554 0.96138 0.96125 0.91551 0.95019 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.31 71.24 0.73 -0.15 16 2 C -0.18 -3.26 6.28 24.68 0.15 -3.10 16 3 C -0.16 -3.21 9.82 21.08 0.21 -3.01 16 4 C -0.02 -0.50 5.90 -20.42 -0.12 -0.62 16 5 C -0.10 -2.58 9.56 71.24 0.68 -1.90 16 6 C -0.31 -9.63 6.45 24.08 0.16 -9.47 16 7 C 0.58 22.16 7.78 86.42 0.67 22.84 16 8 O -0.57 -25.15 14.24 -4.34 -0.06 -25.21 16 9 N -0.71 -27.29 4.95 -467.18 -2.31 -29.61 16 10 C 0.15 6.63 4.50 86.38 0.39 7.02 16 11 C 0.05 2.37 0.50 -52.92 -0.03 2.35 16 12 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 13 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 14 C -0.53 -28.37 8.01 25.60 0.21 -28.17 16 15 H 0.05 2.52 7.74 -2.92 -0.02 2.50 16 16 C 0.03 1.54 5.15 84.65 0.44 1.98 16 17 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 18 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 S 0.20 4.71 22.10 -56.49 -1.25 3.47 16 23 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.05 6.00 -2.38 -0.01 2.03 16 30 H 0.40 14.03 5.28 -92.70 -0.49 13.54 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 34 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 38 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 39 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -62.22 326.45 3.82 -58.40 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.56 Total: 18.19 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.65 Total: -22.12 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.11 Total: -77.58 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.25 Total: 3.47 kcal Total: -62.22 3.82 -58.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601630897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.307 kcal (2) G-P(sol) polarization free energy of solvation -62.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds