Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99667 * 2 1 4 4 H 1.08997 * 109.47521 * 329.99644 * 3 2 1 5 5 C 1.53006 * 109.47271 * 89.99888 * 3 2 1 6 6 C 1.50705 * 109.46902 * 209.99392 * 3 2 1 7 7 O 1.21277 * 119.99864 * 345.17799 * 6 3 2 8 8 N 1.34779 * 119.99721 * 165.17404 * 6 3 2 9 9 C 1.37128 * 120.00130 * 2.03443 * 8 6 3 10 10 H 1.07999 * 119.99978 * 118.11029 * 9 8 6 11 11 C 1.38879 * 119.99903 * 298.10931 * 9 8 6 12 12 N 1.31425 * 120.00128 * 163.67923 * 11 9 8 13 13 Si 1.86805 * 119.99860 * 343.67622 * 11 9 8 14 14 H 1.48506 * 109.46932 * 95.82003 * 13 11 9 15 15 H 1.48505 * 109.46792 * 215.81425 * 13 11 9 16 16 H 1.48496 * 109.47629 * 335.81885 * 13 11 9 17 17 C 1.39836 * 119.99792 * 182.03016 * 8 6 3 18 18 C 1.38982 * 120.05301 * 94.84193 * 17 8 6 19 19 C 1.38044 * 119.94994 * 179.72601 * 18 17 8 20 20 C 1.38538 * 120.04640 * 0.54637 * 19 18 17 21 21 F 1.35106 * 119.94252 * 179.74816 * 20 19 18 22 22 C 1.38494 * 120.11047 * 359.72887 * 20 19 18 23 23 C 1.38086 * 120.04929 * 0.02562 * 22 20 19 24 24 C 1.50697 * 120.02439 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.47750 * 300.00199 * 1 2 3 26 26 H 1.09002 * 109.47027 * 60.00808 * 1 2 3 27 27 H 1.09003 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46864 * 176.93361 * 5 3 2 29 29 H 1.09002 * 109.47022 * 296.93162 * 5 3 2 30 30 H 1.08999 * 109.47144 * 56.92687 * 5 3 2 31 31 H 0.96994 * 120.00236 * 180.02562 * 12 11 9 32 32 H 1.08007 * 120.01858 * 359.97438 * 18 17 8 33 33 H 1.07999 * 119.97524 * 180.27621 * 19 18 17 34 34 H 1.07998 * 119.97408 * 180.02562 * 22 20 19 35 35 H 1.09002 * 109.47281 * 270.01877 * 24 23 22 36 36 H 1.09003 * 109.47714 * 30.01918 * 24 23 22 37 37 H 1.09000 * 109.47639 * 150.01766 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2175 1.7714 1.4425 6 6 3.3386 1.2639 -0.7103 7 8 3.8743 0.1988 -0.9326 8 7 3.9313 2.4104 -1.0986 9 6 3.3460 3.6166 -0.8105 10 1 3.8596 4.3297 -0.1827 11 6 2.0929 3.9210 -1.3260 12 7 1.3930 4.9077 -0.8123 13 14 1.4022 2.9281 -2.7496 14 1 0.5155 1.8593 -2.2234 15 1 0.6233 3.8216 -3.6443 16 1 2.5184 2.3142 -3.5127 17 6 5.1432 2.3699 -1.7951 18 6 5.1491 2.4088 -3.1844 19 6 6.3470 2.3745 -3.8697 20 6 7.5420 2.2898 -3.1740 21 9 8.7128 2.2512 -3.8470 22 6 7.5384 2.2451 -1.7897 23 6 6.3429 2.2844 -1.0998 24 6 6.3397 2.2351 0.4064 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 2.7105 2.7436 1.4430 29 1 1.2513 1.8538 1.9402 30 1 2.8385 1.0489 1.9721 31 1 0.5177 5.1201 -1.1721 32 1 4.2174 2.4700 -3.7272 33 1 6.3523 2.4092 -4.9491 34 1 8.4713 2.1796 -1.2496 35 1 6.2861 1.1975 0.7359 36 1 7.2540 2.6904 0.7869 37 1 5.4765 2.7819 0.7860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602385492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -84.669452 kcal Electronic energy + Delta-G solvation = -23144.304036 eV Core-core repulsion = 19609.097794 eV Total energy + Delta-G solvation = -3535.206241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.51962 -40.07489 -38.25215 -36.72333 -34.91847 -32.50764 -32.13027 -30.90001 -28.90749 -26.60868 -26.34568 -24.87960 -23.83203 -21.96053 -21.14153 -19.51427 -18.10899 -16.91636 -16.73190 -16.25297 -15.72036 -15.39135 -15.21300 -14.95365 -14.49888 -14.05496 -13.80335 -13.60646 -13.08095 -13.01874 -12.97728 -12.69817 -12.63086 -12.15661 -11.93400 -11.60896 -11.45246 -11.40381 -11.23502 -11.22175 -11.02188 -10.79192 -10.25508 -10.08396 -9.23192 -9.18801 -8.69750 -8.48304 -8.01414 -7.80667 -6.70106 -4.57923 1.61073 1.68391 2.88336 3.03911 3.07654 3.44932 3.71755 3.88301 4.06513 4.62397 4.65321 4.72225 5.16667 5.20677 5.50287 5.55511 5.64114 5.68712 5.78476 5.86324 5.90822 5.93743 5.99324 6.11478 6.15036 6.28098 6.38641 6.41959 6.51792 6.60926 6.69223 6.87879 7.06987 7.18695 7.46414 7.59932 7.81764 8.23872 8.75549 8.97563 9.46593 10.37024 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.007181 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.176691 B = 3897.992601 C = 4305.695658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.074 3.926 4 H 0.092 0.908 5 C -0.154 4.154 6 C 0.507 3.493 7 O -0.554 6.554 8 N -0.441 5.441 9 C -0.349 4.349 10 H 0.105 0.895 11 C 0.081 3.919 12 N -0.848 5.848 13 Si 0.843 3.157 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.249 1.249 17 C 0.166 3.834 18 C -0.097 4.097 19 C -0.154 4.154 20 C 0.079 3.921 21 F -0.149 7.149 22 C -0.150 4.150 23 C -0.055 4.055 24 C -0.111 4.111 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.279 0.721 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -2.646 0.228 3.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.014 3.986 4 H 0.109 0.891 5 C -0.212 4.212 6 C 0.297 3.703 7 O -0.433 6.433 8 N -0.164 5.164 9 C -0.475 4.475 10 H 0.122 0.878 11 C -0.129 4.129 12 N -0.481 5.481 13 Si 0.668 3.332 14 H -0.191 1.191 15 H -0.202 1.202 16 H -0.173 1.173 17 C 0.076 3.924 18 C -0.116 4.116 19 C -0.173 4.173 20 C 0.060 3.940 21 F -0.128 7.128 22 C -0.170 4.170 23 C -0.057 4.057 24 C -0.167 4.167 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.589 -3.223 0.119 4.136 hybrid contribution -0.637 0.063 -1.099 1.272 sum 1.952 -3.160 -0.980 3.841 Atomic orbital electron populations 1.22817 0.81931 1.02126 1.00033 1.87934 1.18698 1.27183 1.95104 1.21958 0.94014 0.84846 0.97780 0.89075 1.22017 1.02057 1.03218 0.93898 1.20649 0.86981 0.83733 0.78971 1.90591 1.65926 1.30025 1.56792 1.41124 1.18566 1.06115 1.50608 1.18912 1.01664 0.94527 1.32405 0.87806 1.25645 0.96421 0.95139 0.95689 1.69673 1.11761 1.27994 1.38704 0.87568 0.80750 0.80577 0.84282 1.19061 1.20194 1.17327 1.17886 0.87214 0.97146 0.90145 1.21519 0.97985 0.98059 0.94003 1.20879 0.90994 1.05220 1.00201 1.17588 0.80910 1.05335 0.90132 1.91437 1.46411 1.94330 1.80605 1.20754 0.98610 1.05579 0.92010 1.19922 0.91411 0.97616 0.96737 1.20733 1.02949 1.02532 0.90520 0.94050 0.94243 0.89884 0.88685 0.92718 0.92710 0.91056 0.84745 0.85257 0.85166 0.91168 0.91999 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.82 101.05 1.09 1.56 16 2 O -0.37 -7.94 9.92 -54.69 -0.54 -8.48 16 3 C 0.07 1.63 1.96 -27.88 -0.05 1.57 16 4 H 0.09 2.07 2.92 -51.93 -0.15 1.91 16 5 C -0.15 -2.96 9.41 37.16 0.35 -2.61 16 6 C 0.51 12.14 5.51 -10.98 -0.06 12.08 16 7 O -0.55 -14.59 16.54 -13.90 -0.23 -14.82 16 8 N -0.44 -10.16 0.81 -58.97 -0.05 -10.21 16 9 C -0.35 -8.33 7.29 -14.95 -0.11 -8.44 16 10 H 0.10 2.62 8.06 -52.49 -0.42 2.20 16 11 C 0.08 1.94 4.22 -17.49 -0.07 1.87 16 12 N -0.85 -21.11 13.96 55.49 0.77 -20.33 16 13 Si 0.84 18.82 24.98 -169.99 -4.25 14.58 16 14 H -0.26 -5.80 5.37 56.52 0.30 -5.49 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.25 -5.58 4.64 56.52 0.26 -5.31 16 17 C 0.17 3.61 4.39 -83.67 -0.37 3.24 16 18 C -0.10 -1.97 9.97 -39.38 -0.39 -2.37 16 19 C -0.15 -2.72 10.02 -39.54 -0.40 -3.11 16 20 C 0.08 1.38 7.30 -39.38 -0.29 1.10 16 21 F -0.15 -2.46 17.27 2.25 0.04 -2.42 16 22 C -0.15 -2.58 9.67 -39.54 -0.38 -2.96 16 23 C -0.06 -1.06 5.90 -104.42 -0.62 -1.68 16 24 C -0.11 -1.90 9.69 36.00 0.35 -1.55 16 25 H 0.04 0.61 7.94 -51.93 -0.41 0.19 16 26 H 0.04 0.67 6.91 -51.93 -0.36 0.31 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.91 6.68 -51.93 -0.35 1.56 16 29 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.13 2.79 5.38 -52.48 -0.28 2.51 16 33 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.08 1.49 7.19 -51.93 -0.37 1.12 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -27.63 306.71 -5.25 -32.88 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.67 Total: 5.49 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.95 Total: -1.31 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.73 Total: -30.54 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.77 Total: -23.31 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.25 Total: 14.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.63 -5.25 -32.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602385492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.794 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds