Wall clock time and date at job start Tue Mar 31 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00020 * 2 1 4 4 H 1.08997 * 109.47367 * 26.22731 * 3 2 1 5 5 C 1.53002 * 109.47170 * 266.22713 * 3 2 1 6 6 C 1.50704 * 109.47268 * 146.23179 * 3 2 1 7 7 O 1.21283 * 119.99882 * 10.24659 * 6 3 2 8 8 N 1.34773 * 120.00370 * 190.52253 * 6 3 2 9 9 C 1.37127 * 119.99838 * 5.90520 * 8 6 3 10 10 H 1.08001 * 120.00329 * 232.83742 * 9 8 6 11 11 C 1.38884 * 119.99926 * 52.83943 * 9 8 6 12 12 N 1.31435 * 119.99851 * 195.36751 * 11 9 8 13 13 Si 1.86796 * 120.00239 * 15.35957 * 11 9 8 14 14 H 1.48502 * 109.46984 * 92.57407 * 13 11 9 15 15 H 1.48495 * 109.47428 * 212.57345 * 13 11 9 16 16 H 1.48507 * 109.47273 * 332.57656 * 13 11 9 17 17 C 1.39838 * 120.00373 * 185.90414 * 8 6 3 18 18 C 1.38980 * 120.05122 * 96.05026 * 17 8 6 19 19 C 1.38039 * 119.94582 * 179.97438 * 18 17 8 20 20 C 1.38539 * 120.05436 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.94885 * 179.97438 * 20 19 18 22 22 C 1.38505 * 120.10440 * 359.96314 * 20 19 18 23 23 C 1.38090 * 120.05063 * 359.78275 * 22 20 19 24 24 C 1.50697 * 120.02681 * 180.23246 * 23 22 20 25 25 H 1.08993 * 109.47648 * 184.90077 * 1 2 3 26 26 H 1.09009 * 109.46705 * 304.89943 * 1 2 3 27 27 H 1.08999 * 109.47535 * 64.89482 * 1 2 3 28 28 H 1.09000 * 109.47006 * 184.64386 * 5 3 2 29 29 H 1.08997 * 109.47040 * 304.64457 * 5 3 2 30 30 H 1.09002 * 109.46840 * 64.64084 * 5 3 2 31 31 H 0.96989 * 119.99801 * 179.97438 * 12 11 9 32 32 H 1.07999 * 120.02473 * 0.02562 * 18 17 8 33 33 H 1.07996 * 119.97398 * 180.02562 * 19 18 17 34 34 H 1.07998 * 119.97448 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.47088 * 273.85695 * 24 23 22 36 36 H 1.09003 * 109.46897 * 33.85045 * 24 23 22 37 37 H 1.08996 * 109.47027 * 153.85008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3159 2.0124 0.4541 5 6 2.3043 1.7328 -1.4394 6 6 3.2935 1.2840 0.7897 7 8 3.7701 0.2264 1.1437 8 7 3.9088 2.4403 1.1075 9 6 3.3076 3.6385 0.8191 10 1 3.8442 4.3914 0.2609 11 6 2.0086 3.8839 1.2449 12 7 1.3248 4.8802 0.7278 13 14 1.2333 2.7980 2.5521 14 1 1.4625 3.3959 3.8920 15 1 -0.2264 2.6881 2.3024 16 1 1.8473 1.4468 2.5013 17 6 5.1601 2.4181 1.7313 18 6 6.3180 2.5440 0.9730 19 6 7.5521 2.5224 1.5911 20 6 7.6371 2.3748 2.9660 21 9 8.8460 2.3534 3.5686 22 6 6.4845 2.2494 3.7237 23 6 5.2475 2.2757 3.1105 24 6 3.9936 2.1445 3.9361 25 1 -0.3634 -1.0238 0.0878 26 1 -0.3633 0.5880 0.8429 27 1 -0.3634 0.4360 -0.9305 28 1 2.8223 2.6918 -1.4350 29 1 2.9325 0.9827 -1.9199 30 1 1.3677 1.8281 -1.9887 31 1 0.4175 5.0514 1.0249 32 1 6.2523 2.6595 -0.0987 33 1 8.4522 2.6206 1.0024 34 1 6.5531 2.1348 4.7954 35 1 3.7630 1.0891 4.0813 36 1 4.1453 2.6198 4.9052 37 1 3.1658 2.6295 3.4190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602385493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:18 Heat of formation + Delta-G solvation = -70.499242 kcal Electronic energy + Delta-G solvation = -23274.131691 eV Core-core repulsion = 19739.539916 eV Total energy + Delta-G solvation = -3534.591775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.55418 -40.16792 -38.30755 -36.73447 -34.92253 -32.50856 -32.25759 -30.92324 -28.93789 -26.87373 -26.33463 -24.82628 -23.84345 -22.08948 -21.21124 -19.61344 -18.03350 -17.06729 -16.72332 -16.30021 -15.83522 -15.41188 -15.24270 -15.04077 -14.53200 -13.97259 -13.79901 -13.60976 -13.26282 -12.99011 -12.98750 -12.88476 -12.59172 -12.29279 -12.06101 -11.85077 -11.58594 -11.35637 -11.24829 -11.05388 -10.84635 -10.62896 -10.20262 -9.87161 -9.43341 -9.22915 -8.66645 -8.51863 -8.04551 -7.88944 -6.71721 -4.51285 1.57210 1.63756 2.86017 2.99600 3.05756 3.52476 3.68031 3.84870 4.02638 4.59106 4.63009 4.68919 5.11495 5.16597 5.46937 5.48377 5.58668 5.66823 5.73480 5.77930 5.87115 5.90685 5.93309 6.04813 6.06674 6.21921 6.34938 6.41017 6.45958 6.53152 6.61803 6.86721 7.02017 7.14859 7.43162 7.55353 7.75195 8.24692 8.72552 8.99159 9.46513 10.36278 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.007098 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.519837 B = 3943.805928 C = 4228.471617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.080 3.920 4 H 0.082 0.918 5 C -0.155 4.155 6 C 0.509 3.491 7 O -0.556 6.556 8 N -0.447 5.447 9 C -0.346 4.346 10 H 0.107 0.893 11 C 0.075 3.925 12 N -0.848 5.848 13 Si 0.844 3.156 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.247 1.247 17 C 0.167 3.833 18 C -0.086 4.086 19 C -0.153 4.153 20 C 0.082 3.918 21 F -0.148 7.148 22 C -0.150 4.150 23 C -0.051 4.051 24 C -0.119 4.119 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.279 0.721 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -2.773 0.927 3.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.286 6.286 3 C 0.020 3.980 4 H 0.099 0.901 5 C -0.212 4.212 6 C 0.298 3.702 7 O -0.435 6.435 8 N -0.169 5.169 9 C -0.472 4.472 10 H 0.124 0.876 11 C -0.133 4.133 12 N -0.482 5.482 13 Si 0.672 3.328 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.171 1.171 17 C 0.077 3.923 18 C -0.106 4.106 19 C -0.172 4.172 20 C 0.063 3.937 21 F -0.127 7.127 22 C -0.169 4.169 23 C -0.053 4.053 24 C -0.175 4.175 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.470 -3.359 1.090 4.309 hybrid contribution -0.664 0.059 0.891 1.113 sum 1.806 -3.300 1.981 4.251 Atomic orbital electron populations 1.22820 0.81932 1.02246 0.99891 1.87944 1.18605 1.27028 1.95035 1.21941 0.94210 0.84526 0.97308 0.90059 1.22015 1.02128 1.03310 0.93782 1.20379 0.86266 0.83466 0.80039 1.90587 1.67204 1.30741 1.54976 1.41170 1.15572 1.06012 1.54196 1.18957 0.98082 0.93568 1.36588 0.87573 1.25600 0.96647 0.95517 0.95585 1.69645 1.10954 1.28414 1.39210 0.87653 0.78813 0.83000 0.83363 1.19504 1.20962 1.17131 1.17840 0.87146 0.97185 0.90122 1.21148 0.90640 0.98409 1.00389 1.20868 0.98648 1.05097 0.92615 1.17575 0.79929 1.05026 0.91199 1.91442 1.42929 1.94365 1.83952 1.20769 0.90674 1.05355 1.00127 1.19932 0.94454 0.97256 0.93652 1.21064 0.95414 1.02351 0.98710 0.89702 0.94618 0.93952 0.88645 0.92578 0.92630 0.90983 0.84907 0.85036 0.85129 0.90809 0.91505 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.88 101.05 1.10 1.57 16 2 O -0.37 -7.92 9.90 -54.93 -0.54 -8.46 16 3 C 0.08 1.79 1.61 -27.88 -0.04 1.74 16 4 H 0.08 1.86 2.66 -51.93 -0.14 1.72 16 5 C -0.15 -3.01 9.44 37.16 0.35 -2.66 16 6 C 0.51 12.36 4.23 -10.99 -0.05 12.31 16 7 O -0.56 -14.82 16.51 -14.14 -0.23 -15.05 16 8 N -0.45 -10.42 1.37 -58.97 -0.08 -10.50 16 9 C -0.35 -8.40 7.70 -14.94 -0.12 -8.52 16 10 H 0.11 2.71 8.06 -52.49 -0.42 2.28 16 11 C 0.07 1.84 4.27 -17.48 -0.07 1.77 16 12 N -0.85 -21.47 13.96 55.49 0.77 -20.70 16 13 Si 0.84 19.36 20.29 -169.99 -3.45 15.91 16 14 H -0.27 -6.02 6.96 56.52 0.39 -5.63 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.25 -5.92 4.89 56.52 0.28 -5.64 16 17 C 0.17 3.61 4.40 -83.67 -0.37 3.25 16 18 C -0.09 -1.62 9.97 -39.38 -0.39 -2.01 16 19 C -0.15 -2.52 10.02 -39.54 -0.40 -2.92 16 20 C 0.08 1.39 7.30 -39.37 -0.29 1.10 16 21 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 22 C -0.15 -2.62 9.69 -39.54 -0.38 -3.00 16 23 C -0.05 -1.04 5.90 -104.42 -0.62 -1.65 16 24 C -0.12 -2.37 9.06 36.00 0.33 -2.04 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.61 7.58 -51.92 -0.39 0.21 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.95 6.65 -51.93 -0.35 1.60 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.11 8.11 -51.93 -0.42 0.68 16 37 H 0.07 1.57 1.60 -51.93 -0.08 1.49 16 LS Contribution 300.59 15.07 4.53 4.53 Total: -1.00 -28.33 300.59 -4.37 -32.70 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.46 Total: 4.99 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.95 Total: -1.08 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.69 Total: -31.20 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.78 Total: -23.51 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -3.45 Total: 15.91 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.33 -4.37 -32.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602385493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.803 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds