Wall clock time and date at job start Tue Mar 31 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00020 * 2 1 4 4 H 1.08997 * 109.47367 * 26.22731 * 3 2 1 5 5 C 1.53002 * 109.47170 * 266.22713 * 3 2 1 6 6 C 1.50704 * 109.47268 * 146.23179 * 3 2 1 7 7 O 1.21283 * 119.99882 * 10.24659 * 6 3 2 8 8 N 1.34773 * 120.00370 * 190.52253 * 6 3 2 9 9 C 1.37127 * 119.99838 * 5.90520 * 8 6 3 10 10 H 1.08001 * 120.00329 * 232.83742 * 9 8 6 11 11 C 1.38884 * 119.99926 * 52.83943 * 9 8 6 12 12 N 1.31435 * 119.99851 * 195.36751 * 11 9 8 13 13 Si 1.86796 * 120.00239 * 15.35957 * 11 9 8 14 14 H 1.48502 * 109.46984 * 92.57407 * 13 11 9 15 15 H 1.48495 * 109.47428 * 212.57345 * 13 11 9 16 16 H 1.48507 * 109.47273 * 332.57656 * 13 11 9 17 17 C 1.39838 * 120.00373 * 185.90414 * 8 6 3 18 18 C 1.38980 * 120.05122 * 96.05026 * 17 8 6 19 19 C 1.38039 * 119.94582 * 179.97438 * 18 17 8 20 20 C 1.38539 * 120.05436 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.94885 * 179.97438 * 20 19 18 22 22 C 1.38505 * 120.10440 * 359.96314 * 20 19 18 23 23 C 1.38090 * 120.05063 * 359.78275 * 22 20 19 24 24 C 1.50697 * 120.02681 * 180.23246 * 23 22 20 25 25 H 1.08993 * 109.47648 * 184.90077 * 1 2 3 26 26 H 1.09009 * 109.46705 * 304.89943 * 1 2 3 27 27 H 1.08999 * 109.47535 * 64.89482 * 1 2 3 28 28 H 1.09000 * 109.47006 * 184.64386 * 5 3 2 29 29 H 1.08997 * 109.47040 * 304.64457 * 5 3 2 30 30 H 1.09002 * 109.46840 * 64.64084 * 5 3 2 31 31 H 0.96989 * 119.99801 * 179.97438 * 12 11 9 32 32 H 1.07999 * 120.02473 * 0.02562 * 18 17 8 33 33 H 1.07996 * 119.97398 * 180.02562 * 19 18 17 34 34 H 1.07998 * 119.97448 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.47088 * 273.85695 * 24 23 22 36 36 H 1.09003 * 109.46897 * 33.85045 * 24 23 22 37 37 H 1.08996 * 109.47027 * 153.85008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3159 2.0124 0.4541 5 6 2.3043 1.7328 -1.4394 6 6 3.2935 1.2840 0.7897 7 8 3.7701 0.2264 1.1437 8 7 3.9088 2.4403 1.1075 9 6 3.3076 3.6385 0.8191 10 1 3.8442 4.3914 0.2609 11 6 2.0086 3.8839 1.2449 12 7 1.3248 4.8802 0.7278 13 14 1.2333 2.7980 2.5521 14 1 1.4625 3.3959 3.8920 15 1 -0.2264 2.6881 2.3024 16 1 1.8473 1.4468 2.5013 17 6 5.1601 2.4181 1.7313 18 6 6.3180 2.5440 0.9730 19 6 7.5521 2.5224 1.5911 20 6 7.6371 2.3748 2.9660 21 9 8.8460 2.3534 3.5686 22 6 6.4845 2.2494 3.7237 23 6 5.2475 2.2757 3.1105 24 6 3.9936 2.1445 3.9361 25 1 -0.3634 -1.0238 0.0878 26 1 -0.3633 0.5880 0.8429 27 1 -0.3634 0.4360 -0.9305 28 1 2.8223 2.6918 -1.4350 29 1 2.9325 0.9827 -1.9199 30 1 1.3677 1.8281 -1.9887 31 1 0.4175 5.0514 1.0249 32 1 6.2523 2.6595 -0.0987 33 1 8.4522 2.6206 1.0024 34 1 6.5531 2.1348 4.7954 35 1 3.7630 1.0891 4.0813 36 1 4.1453 2.6198 4.9052 37 1 3.1658 2.6295 3.4190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602385493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:17 Heat of formation + Delta-G solvation = -87.030703 kcal Electronic energy + Delta-G solvation = -23274.848549 eV Core-core repulsion = 19739.539916 eV Total energy + Delta-G solvation = -3535.308633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.87464 -41.86275 -39.84910 -38.34834 -36.76674 -34.25582 -33.79384 -32.54587 -30.45035 -28.38624 -27.72285 -26.68123 -25.45467 -23.57470 -22.70114 -21.36562 -19.78183 -18.69436 -18.19801 -17.85658 -17.43630 -17.05700 -16.72316 -16.57050 -16.13987 -15.53212 -15.51094 -15.14075 -14.88701 -14.69856 -14.49220 -14.30869 -14.09076 -13.86325 -13.58589 -13.43222 -13.16774 -12.95079 -12.92579 -12.67935 -12.45935 -12.10100 -11.86161 -11.64791 -11.22879 -10.92230 -10.43194 -9.94056 -9.80583 -9.43592 -8.63502 -6.43428 0.11274 0.22760 1.03426 1.15898 1.21818 1.68608 1.95895 2.10571 2.55866 2.74691 3.09353 3.21362 3.72577 3.79276 3.83391 4.00870 4.10879 4.16482 4.33081 4.37955 4.42966 4.48046 4.52208 4.56042 4.67090 4.79247 4.80472 4.85679 5.00620 5.09433 5.17081 5.28473 5.50399 5.60605 5.67432 5.95896 6.09220 6.33639 6.82957 7.14269 7.64123 8.47760 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.007098 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.519837 B = 3943.805928 C = 4228.471617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.390 6.390 3 C 0.079 3.921 4 H 0.073 0.927 5 C -0.148 4.148 6 C 0.501 3.499 7 O -0.589 6.589 8 N -0.442 5.442 9 C -0.340 4.340 10 H 0.089 0.911 11 C 0.056 3.944 12 N -0.873 5.873 13 Si 0.883 3.117 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.265 1.265 17 C 0.124 3.876 18 C -0.095 4.095 19 C -0.140 4.140 20 C 0.086 3.914 21 F -0.139 7.139 22 C -0.144 4.144 23 C -0.072 4.072 24 C -0.120 4.120 25 H 0.115 0.885 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.284 0.716 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -3.020 1.308 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.309 6.309 3 C 0.018 3.982 4 H 0.091 0.909 5 C -0.205 4.205 6 C 0.292 3.708 7 O -0.471 6.471 8 N -0.163 5.163 9 C -0.466 4.466 10 H 0.106 0.894 11 C -0.150 4.150 12 N -0.508 5.508 13 Si 0.710 3.290 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.191 1.191 17 C 0.034 3.966 18 C -0.114 4.114 19 C -0.159 4.159 20 C 0.067 3.933 21 F -0.117 7.117 22 C -0.163 4.163 23 C -0.074 4.074 24 C -0.176 4.176 25 H 0.133 0.867 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.153 -3.580 1.476 4.994 hybrid contribution -0.778 0.123 0.773 1.104 sum 2.375 -3.457 2.249 4.759 Atomic orbital electron populations 1.23136 0.79555 1.04375 1.00705 1.87909 1.21238 1.26543 1.95210 1.21935 0.93160 0.84895 0.98180 0.90949 1.21955 1.03332 1.02569 0.92655 1.20816 0.86917 0.83224 0.79886 1.90541 1.68361 1.31682 1.56479 1.41118 1.16160 1.05297 1.53732 1.18757 0.98088 0.93413 1.36327 0.89381 1.25831 0.96807 0.96074 0.96314 1.69682 1.11525 1.29498 1.40071 0.87057 0.78475 0.81137 0.82335 1.19035 1.20100 1.19097 1.18250 0.87039 0.99993 0.91308 1.21284 0.90749 0.98596 1.00809 1.21171 0.98928 1.02998 0.92822 1.17643 0.80117 1.04126 0.91420 1.91473 1.42274 1.94182 1.83809 1.20995 0.89731 1.03980 1.01610 1.20051 0.95613 0.98453 0.93273 1.21061 0.94644 1.01987 0.99949 0.86718 0.95380 0.91794 0.90045 0.91859 0.90296 0.90481 0.84235 0.81576 0.82340 0.91454 0.88483 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.88 113.37 1.23 1.81 16 2 O -0.39 -16.57 9.90 -130.15 -1.29 -17.86 16 3 C 0.08 3.49 1.61 29.85 0.05 3.54 16 4 H 0.07 3.31 2.66 -2.39 -0.01 3.31 16 5 C -0.15 -5.68 9.44 71.98 0.68 -5.00 16 6 C 0.50 24.62 4.23 87.66 0.37 24.99 16 7 O -0.59 -31.91 16.51 15.79 0.26 -31.65 16 8 N -0.44 -20.84 1.37 -458.87 -0.63 -21.47 16 9 C -0.34 -16.75 7.70 84.02 0.65 -16.10 16 10 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 11 C 0.06 2.79 4.27 84.91 0.36 3.15 16 12 N -0.87 -44.26 13.96 21.65 0.30 -43.95 16 13 Si 0.88 40.15 20.29 68.60 1.39 41.54 16 14 H -0.26 -11.61 6.96 99.48 0.69 -10.91 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.27 -12.88 4.89 99.48 0.49 -12.39 16 17 C 0.12 5.34 4.40 38.21 0.17 5.51 16 18 C -0.10 -3.49 9.97 22.40 0.22 -3.26 16 19 C -0.14 -4.27 10.02 22.29 0.22 -4.04 16 20 C 0.09 2.68 7.30 22.41 0.16 2.85 16 21 F -0.14 -3.99 17.27 44.97 0.78 -3.21 16 22 C -0.14 -4.71 9.69 22.30 0.22 -4.50 16 23 C -0.07 -2.87 5.90 -19.73 -0.12 -2.99 16 24 C -0.12 -4.71 9.06 71.23 0.65 -4.06 16 25 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.03 0.92 7.58 -2.38 -0.02 0.90 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 3.34 6.65 -2.39 -0.02 3.33 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.28 13.50 8.31 -92.72 -0.77 12.73 16 32 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.10 3.06 8.11 -2.39 -0.02 3.04 16 37 H 0.05 2.06 1.60 -2.39 0.00 2.06 16 Total: -1.00 -60.95 300.59 6.54 -54.41 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.86 Total: 20.29 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 4.87 Total: 1.90 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.33 Total: -65.42 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -1.03 Total: -49.51 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.39 Total: 41.54 kcal Total: -60.95 6.54 -54.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602385493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.618 kcal (2) G-P(sol) polarization free energy of solvation -60.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds