Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99911 * 2 1 4 4 C 1.52997 * 109.46998 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47266 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99752 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00475 * 179.97438 * 5 4 3 8 8 C 1.37130 * 119.99826 * 359.97438 * 7 5 4 9 9 H 1.08004 * 119.99603 * 359.97438 * 8 7 5 10 10 C 1.38878 * 120.00040 * 179.97438 * 8 7 5 11 11 N 1.31425 * 119.99901 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99984 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46952 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47002 * 119.99656 * 12 10 8 15 15 H 1.48496 * 109.47090 * 240.00217 * 12 10 8 16 16 C 1.39834 * 120.00239 * 180.02562 * 7 5 4 17 17 C 1.38983 * 120.04679 * 269.72384 * 16 7 5 18 18 C 1.38042 * 119.94300 * 180.27916 * 17 16 7 19 19 C 1.38542 * 120.05599 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.95021 * 180.02562 * 19 18 17 21 21 C 1.38498 * 120.10074 * 0.02562 * 19 18 17 22 22 C 1.38076 * 120.05575 * 0.02562 * 21 19 18 23 23 C 1.50700 * 120.03072 * 179.97438 * 22 21 19 24 24 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47006 * 299.99615 * 1 2 3 26 26 H 1.08995 * 109.46848 * 59.99954 * 1 2 3 27 27 H 1.09004 * 109.46679 * 60.00226 * 3 2 1 28 28 H 1.08998 * 109.46951 * 300.00035 * 3 2 1 29 29 H 1.08994 * 109.47388 * 59.99970 * 4 3 2 30 30 H 1.09009 * 109.47394 * 300.00207 * 4 3 2 31 31 H 0.97009 * 119.99809 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.02809 * 0.24967 * 17 16 7 33 33 H 1.08010 * 119.97214 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.96864 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.47459 * 270.02423 * 23 22 21 36 36 H 1.09007 * 109.46750 * 30.01996 * 23 22 21 37 37 H 1.09000 * 109.47621 * 150.01643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 8 3.4355 3.5425 0.0013 7 7 5.4888 2.7023 0.0001 8 6 6.2948 1.5929 0.0002 9 1 5.8555 0.6062 0.0005 10 6 7.6760 1.7381 -0.0003 11 7 8.2105 2.9387 -0.0012 12 14 8.7740 0.2268 -0.0009 13 1 7.9323 -0.9966 -0.0015 14 1 9.6308 0.2380 -1.2137 15 1 9.6316 0.2376 1.2113 16 6 6.0575 3.9797 0.0012 17 6 6.3458 4.6142 -1.2013 18 6 6.9126 5.8729 -1.1976 19 6 7.1935 6.5039 0.0033 20 9 7.7477 7.7360 0.0044 21 6 6.9070 5.8736 1.2028 22 6 6.3411 4.6141 1.2043 23 6 6.0302 3.9285 2.5098 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8463 -0.8900 29 1 3.8567 0.6439 -0.8908 30 1 3.8575 0.6435 0.8891 31 1 9.1753 3.0401 -0.0019 32 1 6.1271 4.1227 -2.1377 33 1 7.1365 6.3665 -2.1318 34 1 7.1265 6.3676 2.1378 35 1 6.8927 3.3424 2.8269 36 1 5.8014 4.6776 3.2680 37 1 5.1715 3.2700 2.3790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602387946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -93.230400 kcal Electronic energy + Delta-G solvation = -22499.934572 eV Core-core repulsion = 18964.357100 eV Total energy + Delta-G solvation = -3535.577472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.05127 -39.67308 -37.85368 -37.03699 -34.78480 -31.84249 -31.66310 -31.23027 -28.68107 -26.53640 -26.09372 -24.96278 -23.35659 -21.57483 -20.66144 -19.27533 -17.73706 -16.80828 -16.29782 -15.97669 -15.61857 -15.42180 -14.92867 -14.73797 -14.61232 -14.21237 -14.08258 -13.39830 -12.94234 -12.79775 -12.61305 -12.41404 -12.22700 -12.02994 -11.56144 -11.54188 -11.29573 -11.13496 -10.90108 -10.89349 -10.72258 -10.49384 -10.34394 -10.30761 -9.56570 -9.40643 -8.74496 -8.16558 -7.87265 -7.62898 -6.16560 -4.10865 2.26345 2.31232 3.02657 3.14549 3.17256 3.62756 3.76800 4.02419 4.64869 4.72879 4.98907 5.18134 5.35422 5.40683 5.57438 5.59886 5.65468 5.68462 5.69622 5.86997 5.97998 6.13631 6.25986 6.35959 6.39276 6.42345 6.49530 6.59459 6.77141 6.99971 7.08299 7.19396 7.28227 7.38931 7.48097 7.64465 7.87305 8.30477 8.89240 9.23167 9.65109 10.52962 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.006696 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.427140 B = 4180.342649 C = 5531.130700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.397 6.397 3 C 0.079 3.921 4 C -0.117 4.117 5 C 0.466 3.534 6 O -0.597 6.597 7 N -0.414 5.414 8 C -0.342 4.342 9 H 0.110 0.890 10 C 0.038 3.962 11 N -0.854 5.854 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.256 3.744 17 C -0.071 4.071 18 C -0.151 4.151 19 C 0.064 3.936 20 F -0.160 7.160 21 C -0.148 4.148 22 C -0.041 4.041 23 C -0.095 4.095 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.273 0.727 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 -1.831 0.903 5.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.316 6.316 3 C 0.002 3.998 4 C -0.157 4.157 5 C 0.257 3.743 6 O -0.483 6.483 7 N -0.130 5.130 8 C -0.468 4.468 9 H 0.127 0.873 10 C -0.168 4.168 11 N -0.491 5.491 12 Si 0.753 3.247 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.164 3.836 17 C -0.091 4.091 18 C -0.170 4.170 19 C 0.045 3.955 20 F -0.139 7.139 21 C -0.168 4.168 22 C -0.043 4.043 23 C -0.152 4.152 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.930 -1.418 0.905 5.209 hybrid contribution 0.944 -0.388 -0.105 1.026 sum -3.986 -1.807 0.800 4.449 Atomic orbital electron populations 1.22666 0.81541 1.02117 0.99895 1.87812 1.19289 1.29033 1.95514 1.22239 0.93307 0.83117 1.01133 1.21205 0.93077 0.96543 1.04892 1.19842 0.81792 0.90367 0.82341 1.90594 1.60730 1.40618 1.56343 1.41358 1.04131 1.04175 1.63348 1.19860 0.87970 0.86158 1.52848 0.87281 1.25273 0.97477 0.97958 0.96118 1.69864 1.12404 1.20357 1.46444 0.85848 0.79960 0.80885 0.78010 1.19207 1.20611 1.20589 1.16775 0.91033 0.84036 0.91723 1.20653 0.97631 0.93447 0.97386 1.20549 1.04163 0.96441 0.95879 1.17397 1.02223 0.81126 0.94787 1.91374 1.83924 1.41021 1.97563 1.20447 1.04299 0.96091 0.95956 1.19422 0.96969 0.92962 0.94940 1.20515 1.01851 0.99360 0.93427 0.90048 0.94280 0.94290 0.92848 0.92860 0.88999 0.89010 0.91511 0.86943 0.86577 0.86562 0.91316 0.93259 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.40 -6.28 10.70 -35.23 -0.38 -6.66 16 3 C 0.08 1.34 5.23 37.16 0.19 1.53 16 4 C -0.12 -2.18 4.44 -27.88 -0.12 -2.31 16 5 C 0.47 10.50 6.93 -10.99 -0.08 10.42 16 6 O -0.60 -14.81 15.95 5.55 0.09 -14.72 16 7 N -0.41 -9.71 1.80 -58.97 -0.11 -9.82 16 8 C -0.34 -7.96 9.39 -14.94 -0.14 -8.10 16 9 H 0.11 2.37 6.30 -52.48 -0.33 2.04 16 10 C 0.04 0.88 5.45 -17.49 -0.10 0.79 16 11 N -0.85 -20.82 9.31 55.49 0.52 -20.31 16 12 Si 0.93 18.57 29.55 -169.99 -5.02 13.55 16 13 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 C 0.26 6.08 2.20 -83.67 -0.18 5.90 16 17 C -0.07 -1.63 9.05 -39.38 -0.36 -1.99 16 18 C -0.15 -3.16 10.02 -39.54 -0.40 -3.56 16 19 C 0.06 1.35 7.30 -39.37 -0.29 1.06 16 20 F -0.16 -3.19 17.27 2.25 0.04 -3.15 16 21 C -0.15 -3.12 9.67 -39.54 -0.38 -3.51 16 22 C -0.04 -0.93 5.00 -104.42 -0.52 -1.45 16 23 C -0.09 -1.92 9.77 36.01 0.35 -1.57 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.05 0.92 8.10 -51.93 -0.42 0.49 16 29 H 0.09 1.65 7.91 -51.93 -0.41 1.24 16 30 H 0.09 1.64 7.90 -51.92 -0.41 1.23 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 32 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 34 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.05 0.86 8.09 -51.92 -0.42 0.44 16 37 H 0.06 1.31 6.90 -51.93 -0.36 0.95 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -27.30 319.69 -5.82 -33.12 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.86 Total: 4.45 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.91 Total: -1.27 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.41 Total: -30.13 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.29 Total: -21.38 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.30 -5.82 -33.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602387946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.114 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds