Wall clock time and date at job start Tue Mar 31 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99911 * 2 1 4 4 C 1.52997 * 109.46998 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47266 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99752 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00475 * 179.97438 * 5 4 3 8 8 C 1.37130 * 119.99826 * 359.97438 * 7 5 4 9 9 H 1.08004 * 119.99603 * 359.97438 * 8 7 5 10 10 C 1.38878 * 120.00040 * 179.97438 * 8 7 5 11 11 N 1.31425 * 119.99901 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99984 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46952 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47002 * 119.99656 * 12 10 8 15 15 H 1.48496 * 109.47090 * 240.00217 * 12 10 8 16 16 C 1.39834 * 120.00239 * 180.02562 * 7 5 4 17 17 C 1.38983 * 120.04679 * 269.72384 * 16 7 5 18 18 C 1.38042 * 119.94300 * 180.27916 * 17 16 7 19 19 C 1.38542 * 120.05599 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.95021 * 180.02562 * 19 18 17 21 21 C 1.38498 * 120.10074 * 0.02562 * 19 18 17 22 22 C 1.38076 * 120.05575 * 0.02562 * 21 19 18 23 23 C 1.50700 * 120.03072 * 179.97438 * 22 21 19 24 24 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47006 * 299.99615 * 1 2 3 26 26 H 1.08995 * 109.46848 * 59.99954 * 1 2 3 27 27 H 1.09004 * 109.46679 * 60.00226 * 3 2 1 28 28 H 1.08998 * 109.46951 * 300.00035 * 3 2 1 29 29 H 1.08994 * 109.47388 * 59.99970 * 4 3 2 30 30 H 1.09009 * 109.47394 * 300.00207 * 4 3 2 31 31 H 0.97009 * 119.99809 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.02809 * 0.24967 * 17 16 7 33 33 H 1.08010 * 119.97214 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.96864 * 180.02562 * 21 19 18 35 35 H 1.08997 * 109.47459 * 270.02423 * 23 22 21 36 36 H 1.09007 * 109.46750 * 30.01996 * 23 22 21 37 37 H 1.09000 * 109.47621 * 150.01643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 8 3.4355 3.5425 0.0013 7 7 5.4888 2.7023 0.0001 8 6 6.2948 1.5929 0.0002 9 1 5.8555 0.6062 0.0005 10 6 7.6760 1.7381 -0.0003 11 7 8.2105 2.9387 -0.0012 12 14 8.7740 0.2268 -0.0009 13 1 7.9323 -0.9966 -0.0015 14 1 9.6308 0.2380 -1.2137 15 1 9.6316 0.2376 1.2113 16 6 6.0575 3.9797 0.0012 17 6 6.3458 4.6142 -1.2013 18 6 6.9126 5.8729 -1.1976 19 6 7.1935 6.5039 0.0033 20 9 7.7477 7.7360 0.0044 21 6 6.9070 5.8736 1.2028 22 6 6.3411 4.6141 1.2043 23 6 6.0302 3.9285 2.5098 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8463 -0.8900 29 1 3.8567 0.6439 -0.8908 30 1 3.8575 0.6435 0.8891 31 1 9.1753 3.0401 -0.0019 32 1 6.1271 4.1227 -2.1377 33 1 7.1365 6.3665 -2.1318 34 1 7.1265 6.3676 2.1378 35 1 6.8927 3.3424 2.8269 36 1 5.8014 4.6776 3.2680 37 1 5.1715 3.2700 2.3790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602387946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:12 Heat of formation + Delta-G solvation = -106.824759 kcal Electronic energy + Delta-G solvation = -22500.524068 eV Core-core repulsion = 18964.357100 eV Total energy + Delta-G solvation = -3536.166967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.67588 -41.39156 -39.33374 -38.47353 -36.54803 -33.57270 -33.37705 -32.70894 -30.32129 -27.97253 -27.40352 -26.69153 -24.83575 -23.21663 -22.30841 -21.02114 -19.41635 -18.34534 -17.94690 -17.52890 -17.02554 -16.85718 -16.70349 -16.36328 -15.87824 -15.75027 -15.59048 -15.03767 -14.52942 -14.40850 -14.22874 -14.07400 -13.75071 -13.61610 -13.21715 -12.94716 -12.84792 -12.64004 -12.46089 -12.27957 -12.26152 -12.06665 -11.98908 -11.89956 -11.29055 -10.61502 -10.53245 -9.95793 -9.56614 -9.33297 -7.92360 -5.92313 0.56770 0.61554 1.41810 1.51426 1.61553 1.90710 2.23512 2.53760 2.94017 3.21959 3.23977 3.51455 3.99951 4.06508 4.08659 4.14476 4.32429 4.38037 4.56229 4.59060 4.64334 4.66133 4.76745 4.84457 4.86914 4.92059 4.95534 4.96955 5.08531 5.32886 5.41132 5.44028 5.55072 5.74615 5.93728 6.17368 6.22026 6.53916 7.10359 7.47715 7.89055 8.74861 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.006696 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.427140 B = 4180.342649 C = 5531.130700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.090 3.910 4 C -0.109 4.109 5 C 0.458 3.542 6 O -0.626 6.626 7 N -0.420 5.420 8 C -0.354 4.354 9 H 0.121 0.879 10 C 0.001 3.999 11 N -0.873 5.873 12 Si 0.987 3.013 13 H -0.256 1.256 14 H -0.287 1.287 15 H -0.284 1.284 16 C 0.234 3.766 17 C -0.092 4.092 18 C -0.149 4.149 19 C 0.059 3.941 20 F -0.152 7.152 21 C -0.149 4.149 22 C -0.061 4.061 23 C -0.086 4.086 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.268 0.732 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -2.539 1.291 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.013 3.987 4 C -0.149 4.149 5 C 0.250 3.750 6 O -0.514 6.514 7 N -0.136 5.136 8 C -0.480 4.480 9 H 0.139 0.861 10 C -0.202 4.202 11 N -0.510 5.510 12 Si 0.812 3.188 13 H -0.180 1.180 14 H -0.213 1.213 15 H -0.210 1.210 16 C 0.142 3.858 17 C -0.112 4.112 18 C -0.169 4.169 19 C 0.039 3.961 20 F -0.131 7.131 21 C -0.168 4.168 22 C -0.063 4.063 23 C -0.143 4.143 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.054 -2.137 1.293 5.637 hybrid contribution 0.937 -0.127 -0.241 0.975 sum -4.117 -2.265 1.052 4.815 Atomic orbital electron populations 1.22955 0.79282 1.04060 1.00762 1.87777 1.21719 1.27967 1.95612 1.22002 0.92252 0.83802 1.00655 1.21142 0.94149 0.94169 1.05447 1.20475 0.81493 0.91518 0.81548 1.90557 1.61260 1.41971 1.57647 1.41550 1.04555 1.04359 1.63113 1.20200 0.88291 0.86632 1.52831 0.86136 1.25972 0.98401 1.00135 0.95741 1.70014 1.12086 1.21836 1.47041 0.84920 0.78117 0.78543 0.77194 1.17977 1.21284 1.21001 1.17112 0.91620 0.84501 0.92535 1.20746 0.98880 0.94458 0.97101 1.20783 1.03111 0.95837 0.97125 1.17478 1.02218 0.81439 0.94917 1.91391 1.83754 1.40440 1.97541 1.20736 1.03303 0.95659 0.97115 1.19717 0.97466 0.93723 0.95365 1.20453 1.00867 0.99647 0.93348 0.87614 0.93391 0.93463 0.93284 0.93428 0.88371 0.88227 0.92079 0.87541 0.84182 0.84076 0.91847 0.90490 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.37 10.70 -148.98 -1.59 -13.97 16 3 C 0.09 3.00 5.23 71.98 0.38 3.37 16 4 C -0.11 -4.02 4.44 29.85 0.13 -3.88 16 5 C 0.46 20.76 6.93 87.66 0.61 21.36 16 6 O -0.63 -31.52 15.95 -3.04 -0.05 -31.56 16 7 N -0.42 -19.83 1.80 -458.87 -0.83 -20.66 16 8 C -0.35 -16.32 9.39 84.02 0.79 -15.53 16 9 H 0.12 5.13 6.30 -2.91 -0.02 5.11 16 10 C 0.00 0.05 5.45 84.91 0.46 0.51 16 11 N -0.87 -42.50 9.31 21.65 0.20 -42.30 16 12 Si 0.99 37.54 29.55 68.60 2.03 39.57 16 13 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 14 H -0.29 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 16 C 0.23 11.18 2.20 38.21 0.08 11.26 16 17 C -0.09 -4.25 9.05 22.40 0.20 -4.04 16 18 C -0.15 -6.18 10.02 22.30 0.22 -5.95 16 19 C 0.06 2.41 7.30 22.40 0.16 2.57 16 20 F -0.15 -5.81 17.27 44.97 0.78 -5.04 16 21 C -0.15 -6.09 9.67 22.29 0.22 -5.88 16 22 C -0.06 -2.72 5.00 -19.74 -0.10 -2.82 16 23 C -0.09 -3.45 9.77 71.24 0.70 -2.76 16 24 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 28 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 29 H 0.10 3.46 7.91 -2.39 -0.02 3.44 16 30 H 0.10 3.48 7.90 -2.38 -0.02 3.46 16 31 H 0.27 12.80 8.31 -92.70 -0.77 12.03 16 32 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 33 H 0.14 4.96 8.06 -2.91 -0.02 4.93 16 34 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.08 2.56 8.09 -2.38 -0.02 2.55 16 37 H 0.05 1.99 6.90 -2.39 -0.02 1.97 16 Total: -1.00 -57.20 319.69 6.71 -50.49 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 1.07 Total: 23.47 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.10 Total: 0.00 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.63 Total: -62.95 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.64 Total: -45.53 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.78 Total: -5.04 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -57.20 6.71 -50.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602387946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.336 kcal (2) G-P(sol) polarization free energy of solvation -57.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds