Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32778 * 124.71122 * 2 1 4 4 C 1.44424 * 113.08133 * 180.27307 * 3 2 1 5 5 C 1.47194 * 123.45644 * 179.73345 * 4 3 2 6 6 O 1.21632 * 119.99735 * 233.55349 * 5 4 3 7 7 N 1.34775 * 119.99972 * 53.55368 * 5 4 3 8 8 C 1.46503 * 119.99912 * 185.82561 * 7 5 4 9 9 C 1.50693 * 109.46822 * 89.99926 * 8 7 5 10 10 H 1.08002 * 120.00368 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99942 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99835 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47352 * 89.99646 * 13 11 9 15 15 H 1.48505 * 109.46700 * 209.99740 * 13 11 9 16 16 H 1.48501 * 109.46686 * 329.99208 * 13 11 9 17 17 C 1.46500 * 120.00228 * 5.82745 * 7 5 4 18 18 C 1.53000 * 109.47090 * 124.91303 * 17 7 5 19 19 C 1.52995 * 109.47153 * 244.91414 * 17 7 5 20 20 C 1.36007 * 113.08128 * 359.50361 * 4 3 2 21 21 C 1.50696 * 124.59501 * 180.19795 * 20 4 3 22 22 S 1.70454 * 110.81396 * 0.48253 * 20 4 3 23 23 H 1.09000 * 109.46926 * 89.99873 * 1 2 3 24 24 H 1.09003 * 109.46593 * 209.99558 * 1 2 3 25 25 H 1.09001 * 109.46803 * 329.99459 * 1 2 3 26 26 H 1.07997 * 123.45455 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47110 * 209.99971 * 8 7 5 28 28 H 1.08999 * 109.46868 * 330.00305 * 8 7 5 29 29 H 0.96998 * 119.99969 * 180.02562 * 12 11 9 30 30 H 1.09005 * 109.47043 * 4.91571 * 17 7 5 31 31 H 1.09005 * 109.46959 * 60.00216 * 18 17 7 32 32 H 1.08997 * 109.47150 * 180.02562 * 18 17 7 33 33 H 1.09003 * 109.47328 * 299.99937 * 18 17 7 34 34 H 1.09003 * 109.47265 * 60.00065 * 19 17 7 35 35 H 1.09005 * 109.46776 * 179.97438 * 19 17 7 36 36 H 1.08991 * 109.47317 * 300.00208 * 19 17 7 37 37 H 1.09000 * 109.47478 * 180.34560 * 21 20 4 38 38 H 1.08999 * 109.47235 * 300.34953 * 21 20 4 39 39 H 1.09006 * 109.46729 * 60.34727 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0915 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8396 -0.0133 6 8 5.5884 1.8242 -0.8649 7 7 4.7123 2.8081 0.9239 8 6 5.6708 3.9131 0.8433 9 6 5.0742 5.0378 0.0371 10 1 4.0803 4.9396 -0.3738 11 6 5.7969 6.1927 -0.1751 12 7 5.2760 7.1745 -0.8783 13 14 7.5158 6.3629 0.5362 14 1 8.5095 5.8564 -0.4441 15 1 7.7917 7.7928 0.8270 16 1 7.6122 5.5750 1.7912 17 6 3.7453 2.7560 2.0232 18 6 4.4881 2.8190 3.3592 19 6 2.7869 3.9438 1.9161 20 6 3.9478 -0.5326 -0.0002 21 6 5.3335 -1.1249 -0.0003 22 16 2.5065 -1.4426 -0.0002 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8615 2.0940 0.0004 27 1 5.9010 4.2684 1.8477 28 1 6.5853 3.5664 0.3620 29 1 5.7846 7.9868 -1.0279 30 1 3.1794 1.8261 1.9655 31 1 5.0540 3.7488 3.4169 32 1 3.7687 2.7797 4.1771 33 1 5.1709 1.9727 3.4356 34 1 2.2576 3.8989 0.9642 35 1 2.0671 3.9047 2.7338 36 1 3.3526 4.8735 1.9736 37 1 5.2637 -2.2127 -0.0008 38 1 5.8696 -0.7947 -0.8900 39 1 5.8694 -0.7956 0.8900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608813901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -34.936513 kcal Electronic energy + Delta-G solvation = -20627.109867 eV Core-core repulsion = 17660.273384 eV Total energy + Delta-G solvation = -2966.836483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21050 -38.26986 -37.63142 -34.86464 -34.02506 -32.63268 -30.79964 -29.73816 -28.08684 -26.40406 -25.12387 -23.69377 -22.58416 -20.75717 -19.34285 -19.06961 -18.14472 -17.62642 -17.05680 -16.31631 -15.81170 -15.33640 -15.07833 -14.87130 -14.67945 -14.54515 -14.21635 -14.17401 -13.84513 -13.75135 -13.62913 -13.38234 -12.98112 -12.84317 -12.70524 -12.52628 -12.49336 -12.35854 -12.34048 -11.94068 -11.84508 -11.76962 -11.53369 -10.81154 -10.77382 -9.54835 -9.48215 -9.20354 -8.32158 -6.34917 -0.11248 0.56744 0.89954 1.15149 1.30424 1.34493 1.42374 2.01162 2.30424 2.34488 3.01530 3.68727 3.72994 3.95766 4.10496 4.22304 4.27373 4.38550 4.50330 4.56645 4.63587 4.70043 4.80222 4.82040 4.85677 4.86381 4.96420 4.99332 5.03239 5.10010 5.11851 5.23421 5.33348 5.41686 5.45525 5.56123 5.68109 6.26700 6.64592 6.67486 7.20966 7.36313 8.84373 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.005539 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.512868 B = 5054.279915 C = 5374.031085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.193 4.193 3 C -0.128 4.128 4 C -0.174 4.174 5 C 0.566 3.434 6 O -0.591 6.591 7 N -0.584 5.584 8 C 0.224 3.776 9 C -0.522 4.522 10 H 0.034 0.966 11 C 0.013 3.987 12 N -0.944 5.944 13 Si 0.939 3.061 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.240 1.240 17 C 0.128 3.872 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.184 4.184 21 C -0.084 4.084 22 S 0.237 5.763 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.052 0.948 28 H 0.015 0.985 29 H 0.267 0.733 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -18.864 9.491 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.310 4.310 3 C -0.157 4.157 4 C -0.191 4.191 5 C 0.353 3.647 6 O -0.473 6.473 7 N -0.313 5.313 8 C 0.101 3.899 9 C -0.560 4.560 10 H 0.052 0.948 11 C -0.185 4.185 12 N -0.584 5.584 13 Si 0.762 3.238 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.163 1.163 17 C 0.026 3.974 18 C -0.214 4.214 19 C -0.208 4.208 20 C -0.303 4.303 21 C -0.142 4.142 22 S 0.503 5.497 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.155 0.845 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.926 -20.215 9.034 23.873 hybrid contribution 1.374 2.684 -0.530 3.062 sum -7.552 -17.530 8.504 20.897 Atomic orbital electron populations 1.20483 0.85003 1.04644 1.03831 1.24674 1.01875 0.95549 1.08890 1.21054 0.89942 1.00182 1.04474 1.20067 0.94013 0.93012 1.12019 1.18273 0.84279 0.81406 0.80703 1.90697 1.40271 1.77063 1.39314 1.48026 1.34974 1.22804 1.25514 1.19330 0.88844 0.84560 0.97117 1.21481 1.02192 0.99622 1.32750 0.94758 1.25748 1.02259 0.95221 0.95228 1.70036 1.39830 1.07026 1.41556 0.85839 0.79551 0.78118 0.80243 1.20423 1.19933 1.16347 1.21396 0.89710 1.00145 0.86181 1.22133 1.01333 1.01993 0.95972 1.22095 0.99002 0.98331 1.01371 1.24568 1.03630 0.96306 1.05804 1.20396 0.89431 1.01466 1.02903 1.82393 0.90499 1.06490 1.70302 0.89898 0.89035 0.89703 0.84504 0.93044 0.96718 0.92399 0.87954 0.93100 0.88406 0.92377 0.94546 0.89116 0.93449 0.88143 0.91769 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.35 71.24 0.74 -0.43 16 2 C -0.19 -4.28 6.44 24.51 0.16 -4.12 16 3 C -0.13 -3.83 8.23 22.67 0.19 -3.64 16 4 C -0.17 -6.16 4.58 -19.87 -0.09 -6.25 16 5 C 0.57 25.72 6.94 86.60 0.60 26.32 16 6 O -0.59 -32.09 16.06 -4.13 -0.07 -32.16 16 7 N -0.58 -25.51 2.39 -806.27 -1.92 -27.43 16 8 C 0.22 11.31 3.83 85.63 0.33 11.64 16 9 C -0.52 -31.00 8.41 25.60 0.22 -30.78 16 10 H 0.03 2.27 7.83 -2.91 -0.02 2.24 16 11 C 0.01 0.79 5.47 84.66 0.46 1.26 16 12 N -0.94 -60.21 13.96 21.45 0.30 -59.91 16 13 Si 0.94 45.36 27.47 68.60 1.88 47.24 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 17 C 0.13 4.26 2.69 44.99 0.12 4.38 16 18 C -0.16 -4.32 9.07 71.98 0.65 -3.66 16 19 C -0.15 -5.11 8.53 71.98 0.61 -4.49 16 20 C -0.18 -5.28 6.34 25.17 0.16 -5.12 16 21 C -0.08 -2.19 9.59 71.23 0.68 -1.51 16 22 S 0.24 4.73 22.93 -56.49 -1.30 3.44 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.14 4.31 6.78 -2.91 -0.02 4.29 16 27 H 0.05 2.41 5.24 -2.39 -0.01 2.40 16 28 H 0.01 0.81 6.78 -2.39 -0.02 0.79 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.10 3.02 5.20 -2.38 -0.01 3.01 16 31 H 0.05 1.57 6.52 -2.38 -0.02 1.55 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.34 6.98 -2.39 -0.02 1.32 16 35 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.05 1.94 6.92 -2.39 -0.02 1.92 16 37 H 0.10 1.84 8.11 -2.39 -0.02 1.82 16 38 H 0.06 2.00 7.85 -2.39 -0.02 1.98 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -77.44 327.56 4.71 -72.73 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.99 Total: 12.51 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.83 Total: -16.41 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -1.63 Total: -87.35 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.07 Total: -32.16 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.30 Total: 3.44 kcal Total: -77.44 4.71 -72.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.789 kcal (2) G-P(sol) polarization free energy of solvation -77.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds