Wall clock time and date at job start Tue Mar 31 2020 05:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00415 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00362 * 3 2 1 7 7 C 1.37871 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00738 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99517 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46609 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46784 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00115 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 12 11 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 12 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47420 * 59.99992 * 9 7 2 26 26 H 1.09001 * 109.47195 * 299.99805 * 9 7 2 27 27 H 1.09002 * 109.47193 * 60.00235 * 10 9 7 28 28 H 1.08992 * 109.47333 * 299.99233 * 10 9 7 29 29 H 0.97003 * 120.00244 * 359.97438 * 11 10 9 30 30 H 1.09002 * 109.47120 * 59.99760 * 14 12 11 31 31 H 1.08998 * 109.46862 * 300.00562 * 14 12 11 32 32 H 1.09002 * 109.47153 * 59.99773 * 15 14 12 33 33 H 1.09001 * 109.46832 * 299.99964 * 15 14 12 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5130 -4.9307 0.0001 12 6 2.1869 -6.0979 -0.0003 13 8 3.3998 -6.0978 -0.0007 14 6 1.4335 -7.4031 -0.0003 15 6 2.4278 -8.5659 -0.0002 16 8 1.7133 -9.8035 -0.0007 17 6 2.4534 -10.9433 -0.0001 18 6 3.8393 -10.8715 -0.0049 19 6 4.5908 -12.0306 0.0009 20 6 3.9639 -13.2629 0.0004 21 6 2.5811 -13.3382 -0.0005 22 9 1.9703 -14.5433 -0.0015 23 6 1.8249 -12.1792 -0.0003 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.5430 -4.9308 0.0008 30 1 0.8065 -7.4607 -0.8900 31 1 0.8071 -7.4609 0.8899 32 1 3.0544 -8.5081 0.8898 33 1 3.0544 -8.5082 -0.8901 34 1 4.3303 -9.9096 -0.0087 35 1 5.6692 -11.9742 0.0017 36 1 4.5532 -14.1679 0.0013 37 1 0.7465 -12.2374 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612061149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:15 Heat of formation + Delta-G solvation = -113.410399 kcal Electronic energy + Delta-G solvation = -20101.979854 eV Core-core repulsion = 16565.527312 eV Total energy + Delta-G solvation = -3536.452542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.24198 -40.47469 -39.36195 -37.56675 -35.00959 -32.95790 -32.40984 -31.00862 -30.03095 -29.43071 -25.56506 -24.11798 -23.22557 -22.09000 -21.01544 -20.10223 -18.95341 -17.01833 -16.87900 -16.65454 -16.48239 -16.42250 -15.89281 -15.85878 -15.22026 -15.05445 -14.56092 -14.48012 -14.09601 -13.68329 -13.23331 -13.03543 -12.76085 -12.48090 -12.31323 -11.98305 -11.96566 -11.26545 -11.25453 -11.09507 -10.99240 -10.67333 -10.41155 -9.93203 -9.56677 -9.26635 -9.24367 -8.65552 -8.63189 -8.43359 -6.14137 -4.17263 0.77607 0.93711 2.57190 2.82265 3.24106 3.25166 3.32951 3.37547 3.68836 4.04301 4.35948 4.38121 4.58978 4.63357 4.69165 4.75326 4.94225 4.99208 5.05530 5.23097 5.30464 5.53081 5.53482 5.60999 5.72217 5.87727 5.98612 6.24566 6.26369 6.36349 6.65222 6.78718 7.00645 7.45097 7.54932 7.83010 7.87220 8.21122 8.48262 8.88904 9.48008 10.97415 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.064112 B = 0.002114 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.631162 B =13238.728279 C =13644.308998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.718 5.718 12 C 0.511 3.489 13 O -0.554 6.554 14 C -0.142 4.142 15 C 0.075 3.925 16 O -0.313 6.313 17 C 0.166 3.834 18 C -0.218 4.218 19 C -0.049 4.049 20 C -0.196 4.196 21 C 0.136 3.864 22 F -0.136 7.136 23 C -0.193 4.193 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.400 0.600 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -24.600 0.003 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.368 5.368 12 C 0.296 3.704 13 O -0.433 6.433 14 C -0.182 4.182 15 C 0.000 4.000 16 O -0.226 6.226 17 C 0.120 3.880 18 C -0.237 4.237 19 C -0.068 4.068 20 C -0.215 4.215 21 C 0.117 3.883 22 F -0.114 7.114 23 C -0.212 4.212 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.234 0.766 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.085 -24.451 0.002 24.790 hybrid contribution -0.083 0.861 0.002 0.865 sum 4.002 -23.590 0.004 23.927 Atomic orbital electron populations 1.69961 1.06092 1.26837 1.50338 1.25006 0.94912 0.99476 0.94951 0.86449 0.80146 0.83280 0.77649 1.19580 1.20912 1.20909 1.21077 0.93284 0.90346 1.51382 0.92176 1.19339 0.94202 0.91122 0.97926 1.21768 0.96101 0.81350 1.00912 1.46314 1.10734 1.06472 1.73243 1.20154 0.88026 0.85316 0.76901 1.90696 1.13935 1.87909 1.50766 1.21495 0.99330 0.91304 1.06096 1.22539 0.94216 0.79902 1.03373 1.85988 1.35939 1.12763 1.87895 1.18583 0.89738 0.86072 0.93653 1.21491 0.92756 1.00594 1.08829 1.20825 1.00282 0.90791 0.94866 1.21054 0.92545 0.99567 1.08302 1.17279 0.90622 0.79916 1.00532 1.91516 1.83604 1.42618 1.93699 1.20251 1.01363 0.88988 1.10629 0.92848 0.95870 0.95881 0.92425 0.92418 0.76610 0.87750 0.87757 0.90667 0.90676 0.84232 0.84565 0.84660 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 11 N -0.72 -11.53 5.56 -60.29 -0.33 -11.87 16 12 C 0.51 7.71 7.83 -10.99 -0.09 7.62 16 13 O -0.55 -10.32 15.98 5.55 0.09 -10.23 16 14 C -0.14 -1.50 6.07 -27.89 -0.17 -1.67 16 15 C 0.07 0.80 4.03 37.16 0.15 0.95 16 16 O -0.31 -3.40 10.14 -19.42 -0.20 -3.59 16 17 C 0.17 1.72 6.68 -39.23 -0.26 1.46 16 18 C -0.22 -2.01 9.04 -39.42 -0.36 -2.37 16 19 C -0.05 -0.39 10.04 -39.61 -0.40 -0.78 16 20 C -0.20 -1.59 10.02 -39.49 -0.40 -1.99 16 21 C 0.14 1.29 7.30 -39.44 -0.29 1.01 16 22 F -0.14 -1.35 17.27 2.25 0.04 -1.32 16 23 C -0.19 -1.90 9.97 -39.37 -0.39 -2.29 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.40 5.45 8.47 -40.82 -0.35 5.10 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.81 7.63 -51.93 -0.40 0.41 16 33 H 0.07 0.81 7.61 -51.93 -0.40 0.41 16 34 H 0.14 1.21 6.30 -52.49 -0.33 0.88 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -31.15 328.41 -7.33 -38.48 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.81 Total: 1.01 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.77 Total: -8.50 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.40 Total: -36.85 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.11 Total: -13.83 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.15 -7.33 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.934 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds