Wall clock time and date at job start Tue Mar 31 2020 05:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00415 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00362 * 3 2 1 7 7 C 1.37871 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00738 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99517 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46609 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46784 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00115 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 12 11 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 12 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47420 * 59.99992 * 9 7 2 26 26 H 1.09001 * 109.47195 * 299.99805 * 9 7 2 27 27 H 1.09002 * 109.47193 * 60.00235 * 10 9 7 28 28 H 1.08992 * 109.47333 * 299.99233 * 10 9 7 29 29 H 0.97003 * 120.00244 * 359.97438 * 11 10 9 30 30 H 1.09002 * 109.47120 * 59.99760 * 14 12 11 31 31 H 1.08998 * 109.46862 * 300.00562 * 14 12 11 32 32 H 1.09002 * 109.47153 * 59.99773 * 15 14 12 33 33 H 1.09001 * 109.46832 * 299.99964 * 15 14 12 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5130 -4.9307 0.0001 12 6 2.1869 -6.0979 -0.0003 13 8 3.3998 -6.0978 -0.0007 14 6 1.4335 -7.4031 -0.0003 15 6 2.4278 -8.5659 -0.0002 16 8 1.7133 -9.8035 -0.0007 17 6 2.4534 -10.9433 -0.0001 18 6 3.8393 -10.8715 -0.0049 19 6 4.5908 -12.0306 0.0009 20 6 3.9639 -13.2629 0.0004 21 6 2.5811 -13.3382 -0.0005 22 9 1.9703 -14.5433 -0.0015 23 6 1.8249 -12.1792 -0.0003 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.5430 -4.9308 0.0008 30 1 0.8065 -7.4607 -0.8900 31 1 0.8071 -7.4609 0.8899 32 1 3.0544 -8.5081 0.8898 33 1 3.0544 -8.5082 -0.8901 34 1 4.3303 -9.9096 -0.0087 35 1 5.6692 -11.9742 0.0017 36 1 4.5532 -14.1679 0.0013 37 1 0.7465 -12.2374 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612061149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:14 Heat of formation + Delta-G solvation = -132.659007 kcal Electronic energy + Delta-G solvation = -20102.814536 eV Core-core repulsion = 16565.527312 eV Total energy + Delta-G solvation = -3537.287224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97609 -41.28735 -40.57481 -38.31682 -36.62869 -34.82838 -33.39600 -31.86278 -31.29234 -30.51799 -27.11629 -25.39837 -23.93154 -23.10549 -22.59397 -21.33031 -19.74180 -18.58414 -17.88559 -17.67200 -17.52782 -17.18925 -16.82452 -16.68925 -16.62387 -16.33613 -16.28195 -15.37497 -15.07834 -14.73907 -14.56462 -14.29839 -13.86443 -13.80638 -13.22087 -13.17275 -12.97435 -12.76892 -12.67201 -12.51834 -12.23959 -11.97994 -11.77775 -11.67506 -11.45192 -10.91913 -10.61449 -10.03060 -9.93791 -9.35749 -8.24737 -6.34926 0.08025 0.25434 1.40728 1.42082 1.54639 1.60523 1.68641 2.37261 2.55692 2.58415 3.10270 3.32904 3.58827 3.78149 3.93546 3.95531 3.99321 4.10200 4.22950 4.38460 4.41884 4.49469 4.54523 4.72432 4.75950 4.86507 4.97656 5.06073 5.20151 5.28693 5.33108 5.49055 5.58763 5.68387 5.78821 6.15964 6.24418 6.59323 6.78999 7.23563 7.34607 8.87125 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.064112 B = 0.002114 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.631162 B =13238.728279 C =13644.308998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.021 3.979 10 C 0.140 3.860 11 N -0.715 5.715 12 C 0.513 3.487 13 O -0.590 6.590 14 C -0.129 4.129 15 C 0.078 3.922 16 O -0.318 6.318 17 C 0.147 3.853 18 C -0.224 4.224 19 C -0.047 4.047 20 C -0.191 4.191 21 C 0.122 3.878 22 F -0.141 7.141 23 C -0.202 4.202 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.413 0.587 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -25.324 0.004 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.017 4.017 10 C 0.016 3.984 11 N -0.366 5.366 12 C 0.300 3.700 13 O -0.471 6.471 14 C -0.169 4.169 15 C 0.003 3.997 16 O -0.232 6.232 17 C 0.101 3.899 18 C -0.243 4.243 19 C -0.065 4.065 20 C -0.210 4.210 21 C 0.103 3.897 22 F -0.120 7.120 23 C -0.221 4.221 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.250 0.750 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.182 0.818 36 H 0.175 0.825 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.768 -25.204 0.003 25.651 hybrid contribution -0.287 1.008 0.001 1.048 sum 4.481 -24.196 0.004 24.608 Atomic orbital electron populations 1.70060 1.07500 1.27920 1.51108 1.25873 0.95808 1.03113 0.94510 0.85403 0.78994 0.78843 0.77846 1.18935 1.20307 1.20297 1.21509 0.93608 0.91976 1.51322 0.92284 1.19153 0.94288 0.91787 0.96454 1.21231 0.95017 0.82203 0.99944 1.46120 1.11339 1.05517 1.73644 1.20848 0.87705 0.86171 0.75234 1.90682 1.15811 1.88464 1.52167 1.21408 0.98959 0.88213 1.08271 1.22445 0.94114 0.80080 1.03083 1.85947 1.36114 1.12831 1.88274 1.18749 0.90332 0.85955 0.94890 1.21662 0.92500 1.01418 1.08724 1.21163 1.01652 0.90041 0.93615 1.21359 0.92098 1.00658 1.06896 1.17470 0.91334 0.79633 1.01270 1.91501 1.83814 1.42835 1.93832 1.20357 1.01783 0.89115 1.10855 0.92563 0.97219 0.97229 0.93419 0.93410 0.75044 0.85488 0.85494 0.91054 0.91063 0.83951 0.81789 0.82489 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -29.89 9.11 25.60 0.23 -29.66 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.01 5.09 29.85 0.15 1.16 16 10 C 0.14 5.70 5.61 86.38 0.48 6.19 16 11 N -0.72 -22.44 5.56 -463.05 -2.57 -25.01 16 12 C 0.51 14.91 7.83 87.66 0.69 15.60 16 13 O -0.59 -21.73 15.98 -3.05 -0.05 -21.78 16 14 C -0.13 -2.45 6.07 29.85 0.18 -2.27 16 15 C 0.08 1.57 4.03 71.98 0.29 1.86 16 16 O -0.32 -6.55 10.14 -92.39 -0.94 -7.48 16 17 C 0.15 2.92 6.68 22.50 0.15 3.07 16 18 C -0.22 -3.86 9.04 22.37 0.20 -3.66 16 19 C -0.05 -0.63 10.04 22.25 0.22 -0.41 16 20 C -0.19 -2.73 10.02 22.33 0.22 -2.50 16 21 C 0.12 2.20 7.30 22.36 0.16 2.36 16 22 F -0.14 -2.70 17.27 44.97 0.78 -1.93 16 23 C -0.20 -3.84 9.97 22.41 0.22 -3.62 16 24 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.41 10.80 8.47 -92.71 -0.79 10.01 16 30 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.48 7.63 -2.39 -0.02 1.46 16 33 H 0.07 1.47 7.61 -2.39 -0.02 1.46 16 34 H 0.14 2.32 6.30 -2.91 -0.02 2.30 16 35 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -66.53 328.41 3.51 -63.02 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.30 Total: 12.51 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 3.68 Total: -11.12 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.29 Total: -78.28 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.99 Total: -29.26 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.53 3.51 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.638 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds