Wall clock time and date at job start Tue Mar 31 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32481 * 120.37605 * 2 1 4 4 C 1.32299 * 120.90475 * 179.97438 * 3 2 1 5 5 O 1.35449 * 119.16422 * 180.02562 * 4 3 2 6 6 N 1.32318 * 121.66711 * 359.97438 * 4 3 2 7 7 C 1.32752 * 120.65886 * 359.76900 * 6 4 3 8 8 O 1.35512 * 120.47196 * 180.26316 * 7 6 4 9 9 C 1.38190 * 120.37488 * 179.97438 * 2 1 3 10 10 C 1.50697 * 120.76391 * 0.02562 * 9 2 1 11 11 C 1.52997 * 109.47466 * 89.99920 * 10 9 2 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46835 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47061 * 60.00295 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 H 1.09001 * 109.47105 * 270.02520 * 1 2 3 25 25 H 1.08999 * 109.46956 * 30.01713 * 1 2 3 26 26 H 1.08995 * 109.47366 * 150.02215 * 1 2 3 27 27 H 0.96706 * 114.00111 * 90.00494 * 5 4 3 28 28 H 0.96692 * 114.00588 * 270.21636 * 8 7 6 29 29 H 1.09002 * 109.47120 * 329.99673 * 10 9 2 30 30 H 1.08998 * 109.46862 * 210.00475 * 10 9 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 33 33 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 34 34 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 35 35 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 36 36 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1769 1.1429 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1489 2.3440 0.0010 6 7 4.2048 0.0354 0.0015 7 6 3.5991 -1.1459 0.0067 8 8 4.3249 -2.2902 0.0131 9 6 2.2057 -1.1922 0.0005 10 6 1.4783 -2.5120 0.0005 11 6 1.2327 -2.9590 -1.4419 12 6 0.5058 -4.2792 -1.4418 13 8 0.2127 -4.8099 -0.3914 14 7 0.1806 -4.8694 -2.6090 15 6 -0.5265 -6.1525 -2.6089 16 6 -0.7684 -6.5928 -4.0297 17 1 -0.4289 -5.9786 -4.8506 18 6 -1.4230 -7.7799 -4.2816 19 7 -1.8368 -8.5276 -3.2820 20 14 -1.7234 -8.3253 -6.0427 21 1 -0.4225 -8.4776 -6.7425 22 1 -2.4401 -9.6260 -6.0426 23 1 -2.5459 -7.3064 -6.7430 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 4.3372 2.6890 0.8846 28 1 4.5394 -2.6250 -0.8683 29 1 0.5233 -2.4005 0.5140 30 1 2.0822 -3.2596 0.5148 31 1 2.1877 -3.0705 -1.9554 32 1 0.6288 -2.2113 -1.9561 33 1 0.4147 -4.4447 -3.4490 34 1 0.0775 -6.9002 -2.0950 35 1 -1.4814 -6.0410 -2.0951 36 1 -2.2970 -9.3629 -3.4591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701320804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:36 Heat of formation + Delta-G solvation = -80.144063 kcal Electronic energy + Delta-G solvation = -21185.855830 eV Core-core repulsion = 17670.765786 eV Total energy + Delta-G solvation = -3515.090044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72965 -39.05444 -38.45710 -37.37719 -34.95116 -34.22814 -33.45085 -32.37983 -30.51298 -28.82460 -27.28790 -25.10305 -23.32144 -22.83780 -21.76608 -19.70387 -19.59894 -18.86899 -18.25649 -17.28460 -16.15455 -15.97002 -15.64005 -15.25785 -15.20423 -14.48388 -14.29925 -14.12329 -13.88180 -13.31662 -12.87169 -12.79492 -12.69074 -12.64365 -12.23487 -12.00566 -11.89979 -11.76698 -11.12775 -11.07542 -10.97738 -10.89702 -10.68295 -10.36039 -9.56918 -9.46316 -9.41281 -9.05401 -8.78138 -7.95532 -6.20945 -4.28372 0.38348 0.59485 2.58481 2.99242 3.22055 3.26878 3.27322 3.28483 3.41088 3.92427 3.98244 4.30214 4.50757 4.51418 4.79998 4.93681 5.00426 5.14549 5.16356 5.27277 5.34964 5.45557 5.57938 5.68325 5.82113 5.94812 6.17399 6.44981 7.03171 7.09140 7.24462 7.35778 7.46047 7.60462 7.65630 7.92261 8.55061 8.71872 9.01893 9.38454 10.89137 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.002977 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.705979 B = 9403.790433 C = 9471.128539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.212 3.788 3 N -0.530 5.530 4 C 0.511 3.489 5 O -0.457 6.457 6 N -0.552 5.552 7 C 0.386 3.614 8 O -0.468 6.468 9 C -0.204 4.204 10 C -0.055 4.055 11 C -0.137 4.137 12 C 0.497 3.503 13 O -0.554 6.554 14 N -0.712 5.712 15 C 0.249 3.751 16 C -0.546 4.546 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.411 0.589 28 H 0.411 0.589 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.391 0.609 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 18.143 5.469 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 N -0.257 5.257 4 C 0.207 3.793 5 O -0.260 6.260 6 N -0.289 5.289 7 C 0.199 3.801 8 O -0.276 6.276 9 C -0.210 4.210 10 C -0.094 4.094 11 C -0.177 4.177 12 C 0.282 3.718 13 O -0.434 6.434 14 N -0.360 5.360 15 C 0.129 3.871 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.271 0.729 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.621 18.435 6.245 21.287 hybrid contribution -0.066 -0.837 -1.394 1.627 sum 8.555 17.598 4.851 20.159 Atomic orbital electron populations 1.20938 0.86796 1.04890 1.04441 1.21404 0.97637 0.85837 0.88427 1.67854 1.08865 1.31323 1.17645 1.19794 0.83696 0.84539 0.91311 1.84721 1.76162 1.30789 1.34354 1.67388 1.44034 0.98718 1.18736 1.18969 0.86484 0.84586 0.90048 1.84709 1.73703 1.34598 1.34564 1.21722 0.94083 0.98751 1.06454 1.20181 1.01242 0.91196 0.96754 1.21647 1.01646 0.96628 0.97772 1.20349 0.80346 0.86387 0.84728 1.90677 1.55478 1.65851 1.31384 1.46492 1.57782 1.24827 1.06931 1.19110 0.91972 0.78678 0.97377 1.21187 1.39207 1.06497 0.91518 0.91967 1.24950 0.95088 0.96140 0.97783 1.69956 1.37920 1.13346 1.31018 0.86477 0.78494 0.78003 0.83952 1.20061 1.21039 1.20045 0.88949 0.89431 0.88998 0.72934 0.72863 0.89047 0.88725 0.89701 0.89265 0.77700 0.95510 0.95492 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.44 36.00 0.34 -0.56 16 2 C 0.21 2.23 6.81 -82.33 -0.56 1.67 16 3 N -0.53 -6.23 10.40 -11.01 -0.11 -6.34 16 4 C 0.51 6.08 8.71 -91.27 -0.80 5.28 16 5 O -0.46 -4.43 13.64 -18.04 -0.25 -4.67 16 6 N -0.55 -6.95 10.49 -14.79 -0.16 -7.10 16 7 C 0.39 4.45 7.81 -16.71 -0.13 4.32 16 8 O -0.47 -4.76 12.74 -18.23 -0.23 -4.99 16 9 C -0.20 -2.21 5.18 -104.20 -0.54 -2.75 16 10 C -0.05 -0.63 3.78 -27.89 -0.11 -0.73 16 11 C -0.14 -1.59 5.57 -27.88 -0.16 -1.75 16 12 C 0.50 8.84 7.83 -10.98 -0.09 8.76 16 13 O -0.55 -12.20 15.98 5.56 0.09 -12.11 16 14 N -0.71 -13.89 5.55 -61.47 -0.34 -14.23 16 15 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 16 C -0.55 -14.38 9.28 -34.44 -0.32 -14.70 16 17 H 0.06 1.52 7.60 -52.49 -0.40 1.13 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.71 6.03 -51.93 -0.31 0.39 16 27 H 0.41 1.75 9.06 45.56 0.41 2.16 16 28 H 0.41 2.32 9.06 45.56 0.41 2.73 16 29 H 0.09 1.05 6.76 -51.93 -0.35 0.70 16 30 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.88 7.47 -51.93 -0.39 0.49 16 33 H 0.39 6.45 8.32 -40.82 -0.34 6.11 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -35.48 319.14 -5.56 -41.04 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -2.61 Total: 5.55 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -2.48 Total: 7.52 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.13 Total: -52.52 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.39 Total: -21.77 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.48 -5.56 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701320804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.105 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds