Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37645 * 119.83444 * 2 1 4 4 C 1.39823 * 119.94846 * 180.02562 * 3 2 1 5 5 C 1.47180 * 120.18930 * 179.97438 * 4 3 2 6 6 O 1.21541 * 119.99879 * 185.88684 * 5 4 3 7 7 O 1.34774 * 119.99834 * 5.89572 * 5 4 3 8 8 C 1.45207 * 116.99902 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46894 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46893 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47109 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00030 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99825 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99749 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00216 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47008 * 89.99715 * 15 13 11 17 17 H 1.48495 * 109.47204 * 210.00143 * 15 13 11 18 18 H 1.48505 * 109.46945 * 330.00312 * 15 13 11 19 19 C 1.40522 * 119.62685 * 359.97438 * 4 3 2 20 20 N 1.38844 * 120.16865 * 180.02562 * 19 4 3 21 21 C 1.38789 * 119.66454 * 0.02562 * 19 4 3 22 22 C 1.38287 * 120.04624 * 359.97438 * 21 19 4 23 23 F 1.35095 * 119.80549 * 180.02562 * 22 21 19 24 24 H 1.09003 * 109.46511 * 89.99835 * 1 2 3 25 25 H 1.08994 * 109.47159 * 210.00190 * 1 2 3 26 26 H 1.09001 * 109.47393 * 330.00720 * 1 2 3 27 27 H 1.08004 * 120.02999 * 0.04224 * 3 2 1 28 28 H 1.08996 * 109.46822 * 299.99386 * 8 7 5 29 29 H 1.08992 * 109.47033 * 59.99519 * 8 7 5 30 30 H 1.08996 * 109.47162 * 299.99517 * 9 8 7 31 31 H 1.09001 * 109.47279 * 60.00346 * 9 8 7 32 32 H 1.09002 * 109.46911 * 300.00256 * 10 9 8 33 33 H 1.08997 * 109.46901 * 59.99435 * 10 9 8 34 34 H 0.97001 * 120.00105 * 179.97438 * 14 13 11 35 35 H 0.97003 * 120.00077 * 174.42156 * 20 19 4 36 36 H 0.96993 * 120.00090 * 354.42406 * 20 19 4 37 37 H 1.08000 * 119.97500 * 179.72503 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1918 1.1940 0.0000 4 6 3.5900 1.1968 -0.0005 5 6 4.3276 2.4705 -0.0011 6 8 5.5382 2.4716 -0.1095 7 8 3.6606 3.6354 0.1188 8 6 4.4526 4.8524 0.1098 9 6 3.5286 6.0633 0.2546 10 6 4.3633 7.3456 0.2458 11 6 3.4531 8.5383 0.3877 12 1 2.3863 8.3960 0.4759 13 6 3.9827 9.8112 0.4061 14 7 3.1885 10.8520 0.5305 15 14 5.8283 10.0573 0.2559 16 1 6.1945 10.1938 -1.1768 17 1 6.2249 11.2872 0.9875 18 1 6.5328 8.8865 0.8374 19 6 4.2871 -0.0233 -0.0005 20 7 5.6755 -0.0337 -0.0005 21 6 3.5807 -1.2180 -0.0005 22 6 2.1979 -1.2047 0.0000 23 9 1.5152 -2.3705 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6496 2.1281 0.0007 28 1 5.1587 4.8325 0.9399 29 1 4.9992 4.9232 -0.8305 30 1 2.8228 6.0831 -0.5758 31 1 2.9817 5.9927 1.1948 32 1 5.0688 7.3256 1.0764 33 1 4.9106 7.4164 -0.6942 34 1 3.5610 11.7476 0.5439 35 1 6.1543 -0.8734 0.0811 36 1 6.1667 0.7987 -0.0822 37 1 4.1114 -2.1586 -0.0050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751629535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -122.729213 kcal Electronic energy + Delta-G solvation = -20904.172943 eV Core-core repulsion = 17367.316306 eV Total energy + Delta-G solvation = -3536.856636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.28857 -40.76445 -39.04712 -36.74051 -35.16266 -34.09397 -31.99737 -31.25031 -31.20605 -27.63799 -26.23753 -24.47372 -23.22631 -22.18762 -20.84201 -20.19138 -18.13543 -18.02542 -17.24969 -17.06786 -16.47877 -16.44837 -15.98986 -15.40453 -15.25609 -14.51021 -14.34611 -14.20420 -13.60027 -13.48575 -13.26645 -12.96800 -12.93155 -12.76816 -12.34103 -12.25000 -11.93076 -11.56338 -11.09527 -10.99101 -10.63236 -10.58892 -10.47622 -10.03691 -9.83946 -9.75117 -9.27048 -9.22159 -8.58632 -7.92699 -6.08783 -4.07927 0.41880 1.12186 2.34515 2.75010 3.28192 3.35960 3.38920 3.41809 3.44006 3.99634 4.34180 4.41152 4.55969 4.66235 4.92269 5.13129 5.24455 5.31115 5.42241 5.43388 5.44223 5.53462 5.66968 5.72566 5.82828 5.83732 6.04906 6.25373 6.36059 6.44674 6.59199 6.75443 7.05557 7.18484 7.29889 7.54682 7.70722 7.82250 8.47837 8.95574 9.52662 11.04409 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.003041 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.681309 B = 9205.431352 C =10096.037232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.198 4.198 3 C 0.020 3.980 4 C -0.224 4.224 5 C 0.521 3.479 6 O -0.529 6.529 7 O -0.347 6.347 8 C 0.067 3.933 9 C -0.102 4.102 10 C -0.010 4.010 11 C -0.522 4.522 12 H 0.074 0.926 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.307 3.693 20 N -0.849 5.849 21 C -0.254 4.254 22 C 0.184 3.816 23 F -0.132 7.132 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.397 0.603 36 H 0.420 0.580 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -26.243 -1.229 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.201 4.201 3 C 0.002 3.998 4 C -0.231 4.231 5 C 0.370 3.630 6 O -0.421 6.421 7 O -0.263 6.263 8 C -0.006 4.006 9 C -0.140 4.140 10 C -0.048 4.048 11 C -0.560 4.560 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C 0.194 3.806 20 N -0.395 5.395 21 C -0.278 4.278 22 C 0.163 3.837 23 F -0.110 7.110 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.225 0.775 36 H 0.263 0.737 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.239 -25.940 -1.247 25.971 hybrid contribution 1.434 0.031 -0.097 1.438 sum 1.674 -25.909 -1.344 25.998 Atomic orbital electron populations 1.20609 0.89694 1.03245 1.02624 1.19602 0.97384 0.91188 1.11906 1.21067 0.91738 0.98127 0.88892 1.18567 0.93744 0.89086 1.21669 1.20791 0.85511 0.84621 0.72119 1.90450 1.15558 1.87166 1.48904 1.86560 1.42071 1.15046 1.82606 1.23540 0.94575 0.80332 1.02185 1.21571 0.98283 0.91301 1.02796 1.19518 0.96131 0.92473 0.96649 1.21052 0.95152 0.89172 1.50623 0.90765 1.25016 0.97929 0.95981 0.94475 1.69905 1.35109 0.98488 1.50494 0.86784 0.86157 0.77851 0.78549 1.20204 1.21283 1.18988 1.17298 0.84797 0.91216 0.87335 1.43489 1.03091 1.14379 1.78578 1.20358 0.92479 0.97713 1.17230 1.17444 0.89100 0.80887 0.96232 1.91495 1.79941 1.46549 1.93053 0.91224 0.91561 0.90824 0.83198 0.91402 0.91395 0.91452 0.91436 0.96289 0.96721 0.92624 0.77521 0.73684 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.82 36.01 0.35 -0.46 16 2 C -0.20 -1.93 5.88 -104.60 -0.62 -2.55 16 3 C 0.02 0.22 9.24 -39.21 -0.36 -0.14 16 4 C -0.22 -2.74 5.89 -104.81 -0.62 -3.36 16 5 C 0.52 7.65 7.87 34.36 0.27 7.92 16 6 O -0.53 -8.33 13.43 -19.30 -0.26 -8.59 16 7 O -0.35 -5.42 9.48 -40.69 -0.39 -5.81 16 8 C 0.07 1.12 5.48 37.16 0.20 1.33 16 9 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 10 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 11 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 15 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 C 0.31 3.28 6.76 -83.62 -0.57 2.71 16 20 N -0.85 -7.96 8.93 32.54 0.29 -7.67 16 21 C -0.25 -2.35 9.85 -39.36 -0.39 -2.74 16 22 C 0.18 1.81 7.24 -39.33 -0.28 1.52 16 23 F -0.13 -1.29 16.45 2.25 0.04 -1.26 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.49 7.62 -51.93 -0.40 0.09 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.15 1.49 7.62 -52.48 -0.40 1.09 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 36 H 0.42 4.70 5.34 -40.95 -0.22 4.48 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -31.09 320.54 -6.76 -37.86 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.68 Total: 2.03 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.70 Total: -11.41 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 1.06 Total: -34.48 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.65 Total: -14.40 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.09 -6.76 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751629535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.874 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds