Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 119.95121 * 2 1 4 4 C 1.38763 * 120.41299 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.84708 * 179.97438 * 4 3 2 6 6 C 1.37952 * 120.30774 * 0.02562 * 4 3 2 7 7 C 1.39790 * 119.89167 * 0.02562 * 6 4 3 8 8 C 1.47294 * 120.19832 * 180.02562 * 7 6 4 9 9 O 1.21521 * 120.00092 * 185.89304 * 8 7 6 10 10 O 1.34765 * 120.00308 * 5.89406 * 8 7 6 11 11 C 1.45195 * 117.00482 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47479 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47318 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47342 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99719 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99783 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99552 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46995 * 120.00167 * 18 16 14 21 21 H 1.48505 * 109.46916 * 239.99422 * 18 16 14 22 22 C 1.38894 * 119.94811 * 180.02562 * 2 1 3 23 23 N 1.38954 * 120.15559 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47401 * 89.99952 * 1 2 3 25 25 H 1.09007 * 109.47458 * 210.00210 * 1 2 3 26 26 H 1.09003 * 109.47063 * 329.99832 * 1 2 3 27 27 H 1.07999 * 119.79412 * 359.72117 * 3 2 1 28 28 H 1.07996 * 120.05384 * 180.02562 * 6 4 3 29 29 H 1.09004 * 109.46944 * 300.00112 * 11 10 8 30 30 H 1.08998 * 109.47109 * 59.99552 * 11 10 8 31 31 H 1.09004 * 109.46904 * 299.99867 * 12 11 10 32 32 H 1.08993 * 109.47290 * 59.99948 * 12 11 10 33 33 H 1.09004 * 109.46843 * 299.99681 * 13 12 11 34 34 H 1.08998 * 109.47372 * 59.99221 * 13 12 11 35 35 H 0.97000 * 119.99935 * 180.02562 * 17 16 14 36 36 H 0.96999 * 120.00194 * 24.92231 * 23 22 2 37 37 H 0.97004 * 119.99895 * 204.90981 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1957 0.0000 4 6 3.5835 1.2068 0.0005 5 9 4.2464 2.3840 0.0000 6 6 4.2893 0.0215 0.0005 7 6 3.6043 -1.1971 -0.0005 8 6 4.3511 -2.4667 0.0000 9 8 3.7569 -3.5211 -0.1090 10 8 5.6932 -2.4590 0.1214 11 6 6.3632 -3.7472 0.1147 12 6 7.8716 -3.5384 0.2622 13 6 8.5776 -4.8958 0.2545 14 6 10.0635 -4.6901 0.3991 15 1 10.4642 -3.6911 0.4873 16 6 10.9112 -5.7772 0.4189 17 7 10.4231 -6.9937 0.3120 18 14 12.7530 -5.5222 0.5990 19 1 13.0439 -4.0696 0.7008 20 1 13.2304 -6.2104 1.8252 21 1 13.4487 -6.0841 -0.5866 22 6 2.2003 -1.2035 -0.0005 23 7 1.5078 -2.4081 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6518 2.1285 -0.0046 28 1 5.3691 0.0350 0.0014 29 1 5.9974 -4.3513 0.9451 30 1 6.1570 -4.2590 -0.8253 31 1 8.2377 -2.9341 -0.5679 32 1 8.0774 -3.0268 1.2024 33 1 8.2116 -5.5004 1.0844 34 1 8.3718 -5.4070 -0.6859 35 1 11.0195 -7.7586 0.3263 36 1 0.6057 -2.4487 -0.3560 37 1 1.9264 -3.2086 0.3518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767306895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -124.234336 kcal Electronic energy + Delta-G solvation = -20883.681111 eV Core-core repulsion = 17346.759208 eV Total energy + Delta-G solvation = -3536.921903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.88945 -40.71921 -39.16306 -36.52570 -34.63323 -33.95829 -33.08384 -31.67642 -29.34429 -27.20868 -27.09502 -24.67549 -23.00740 -21.75312 -20.89350 -20.31362 -18.06375 -17.38289 -17.34201 -17.02729 -16.33920 -16.25750 -15.69014 -15.62173 -15.35167 -14.47127 -14.27258 -14.00352 -13.92908 -13.57637 -13.24528 -12.94417 -12.41729 -12.36276 -12.19480 -12.03083 -11.86705 -11.68578 -10.99345 -10.72808 -10.65652 -10.57495 -10.42146 -10.26389 -9.74364 -9.52417 -9.28681 -9.15771 -8.39789 -7.82763 -6.04404 -4.07291 0.44350 1.05042 2.42455 2.80692 3.29945 3.37449 3.42017 3.42058 3.62142 4.05504 4.32869 4.42351 4.49671 4.81624 4.89912 5.07853 5.20280 5.26709 5.31822 5.36098 5.55847 5.60064 5.69652 5.74648 5.81444 5.92717 5.99775 6.40476 6.52062 6.52839 6.78887 6.96645 7.16276 7.58416 7.59580 7.70025 7.87048 7.94170 8.35198 8.99262 9.57218 11.07116 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.002960 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.865783 B = 9458.728851 C =10386.449914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.148 4.148 3 C -0.075 4.075 4 C 0.031 3.969 5 F -0.141 7.141 6 C -0.053 4.053 7 C -0.176 4.176 8 C 0.516 3.484 9 O -0.518 6.518 10 O -0.351 6.351 11 C 0.069 3.931 12 C -0.110 4.110 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.270 3.730 23 N -0.855 5.855 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.398 0.602 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.524 15.088 -0.702 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.095 4.095 4 C 0.010 3.990 5 F -0.120 7.120 6 C -0.073 4.073 7 C -0.182 4.182 8 C 0.362 3.638 9 O -0.410 6.410 10 O -0.267 6.267 11 C -0.003 4.003 12 C -0.147 4.147 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.160 3.840 23 N -0.401 5.401 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.227 0.773 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -21.535 14.575 -0.720 26.013 hybrid contribution 1.023 -0.239 0.050 1.052 sum -20.512 14.336 -0.670 25.034 Atomic orbital electron populations 1.20639 0.89924 1.03273 1.02465 1.19260 0.96473 0.90541 1.09019 1.21000 0.92227 0.98694 0.97575 1.17207 0.89987 0.81197 1.10589 1.91498 1.80830 1.44958 1.94706 1.21287 1.01575 0.89696 0.94726 1.18524 0.91113 0.91350 1.17225 1.20746 0.81783 0.88489 0.72746 1.90625 1.69539 1.33339 1.47466 1.86559 1.19570 1.38019 1.82520 1.23543 0.93970 0.80587 1.02228 1.21778 0.88737 1.02261 1.01953 1.19056 0.94846 0.89733 0.97679 1.21212 0.91514 0.92953 1.50203 0.92346 1.25031 0.99064 0.95189 0.95214 1.69974 1.35061 0.97918 1.50454 0.86491 0.85253 0.78332 0.77678 1.19638 1.20967 1.20970 1.17469 0.88956 0.87178 0.90445 1.42943 1.18860 1.09331 1.68944 0.91101 0.91371 0.90936 0.84313 0.83055 0.91400 0.91374 0.92069 0.92067 0.96229 0.96225 0.92946 0.77288 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 9.44 36.00 0.34 -0.23 16 2 C -0.15 -1.27 5.89 -104.47 -0.62 -1.89 16 3 C -0.08 -0.66 9.65 -39.48 -0.38 -1.04 16 4 C 0.03 0.34 7.28 -39.49 -0.29 0.05 16 5 F -0.14 -1.64 17.26 2.25 0.04 -1.60 16 6 C -0.05 -0.64 9.58 -39.11 -0.37 -1.01 16 7 C -0.18 -2.26 5.89 -104.82 -0.62 -2.88 16 8 C 0.52 8.02 7.86 34.41 0.27 8.30 16 9 O -0.52 -8.62 13.61 -19.28 -0.26 -8.88 16 10 O -0.35 -5.91 9.49 -40.67 -0.39 -6.29 16 11 C 0.07 1.27 5.48 37.16 0.20 1.48 16 12 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.27 2.90 6.74 -83.58 -0.56 2.33 16 23 N -0.86 -8.06 8.08 32.56 0.26 -7.80 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.33 6.99 -51.92 -0.36 -0.03 16 26 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 28 H 0.15 1.79 7.62 -52.49 -0.40 1.39 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.40 2.60 7.52 -40.82 -0.31 2.29 16 37 H 0.42 4.59 6.14 -40.82 -0.25 4.34 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -31.24 322.93 -7.15 -38.39 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.66 Total: 1.15 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.72 Total: -10.32 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 1.00 Total: -33.90 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.65 Total: -15.17 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.24 -7.15 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767306895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.840 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds