Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 119.95121 * 2 1 4 4 C 1.38763 * 120.41299 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.84708 * 179.97438 * 4 3 2 6 6 C 1.37952 * 120.30774 * 0.02562 * 4 3 2 7 7 C 1.39790 * 119.89167 * 0.02562 * 6 4 3 8 8 C 1.47294 * 120.19832 * 180.02562 * 7 6 4 9 9 O 1.21521 * 120.00092 * 185.89304 * 8 7 6 10 10 O 1.34765 * 120.00308 * 5.89406 * 8 7 6 11 11 C 1.45195 * 117.00482 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47479 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47318 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47342 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99719 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99783 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99552 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46995 * 120.00167 * 18 16 14 21 21 H 1.48505 * 109.46916 * 239.99422 * 18 16 14 22 22 C 1.38894 * 119.94811 * 180.02562 * 2 1 3 23 23 N 1.38954 * 120.15559 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47401 * 89.99952 * 1 2 3 25 25 H 1.09007 * 109.47458 * 210.00210 * 1 2 3 26 26 H 1.09003 * 109.47063 * 329.99832 * 1 2 3 27 27 H 1.07999 * 119.79412 * 359.72117 * 3 2 1 28 28 H 1.07996 * 120.05384 * 180.02562 * 6 4 3 29 29 H 1.09004 * 109.46944 * 300.00112 * 11 10 8 30 30 H 1.08998 * 109.47109 * 59.99552 * 11 10 8 31 31 H 1.09004 * 109.46904 * 299.99867 * 12 11 10 32 32 H 1.08993 * 109.47290 * 59.99948 * 12 11 10 33 33 H 1.09004 * 109.46843 * 299.99681 * 13 12 11 34 34 H 1.08998 * 109.47372 * 59.99221 * 13 12 11 35 35 H 0.97000 * 119.99935 * 180.02562 * 17 16 14 36 36 H 0.96999 * 120.00194 * 24.92231 * 23 22 2 37 37 H 0.97004 * 119.99895 * 204.90981 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1957 0.0000 4 6 3.5835 1.2068 0.0005 5 9 4.2464 2.3840 0.0000 6 6 4.2893 0.0215 0.0005 7 6 3.6043 -1.1971 -0.0005 8 6 4.3511 -2.4667 0.0000 9 8 3.7569 -3.5211 -0.1090 10 8 5.6932 -2.4590 0.1214 11 6 6.3632 -3.7472 0.1147 12 6 7.8716 -3.5384 0.2622 13 6 8.5776 -4.8958 0.2545 14 6 10.0635 -4.6901 0.3991 15 1 10.4642 -3.6911 0.4873 16 6 10.9112 -5.7772 0.4189 17 7 10.4231 -6.9937 0.3120 18 14 12.7530 -5.5222 0.5990 19 1 13.0439 -4.0696 0.7008 20 1 13.2304 -6.2104 1.8252 21 1 13.4487 -6.0841 -0.5866 22 6 2.2003 -1.2035 -0.0005 23 7 1.5078 -2.4081 -0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6518 2.1285 -0.0046 28 1 5.3691 0.0350 0.0014 29 1 5.9974 -4.3513 0.9451 30 1 6.1570 -4.2590 -0.8253 31 1 8.2377 -2.9341 -0.5679 32 1 8.0774 -3.0268 1.2024 33 1 8.2116 -5.5004 1.0844 34 1 8.3718 -5.4070 -0.6859 35 1 11.0195 -7.7586 0.3263 36 1 0.6057 -2.4487 -0.3560 37 1 1.9264 -3.2086 0.3518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767306895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -141.953031 kcal Electronic energy + Delta-G solvation = -20884.449451 eV Core-core repulsion = 17346.759208 eV Total energy + Delta-G solvation = -3537.690244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.75279 -41.81984 -40.15076 -37.83492 -36.01465 -35.34861 -33.97946 -33.51854 -30.19950 -28.94069 -27.82781 -25.98586 -24.61373 -22.55740 -22.19429 -21.95294 -19.03810 -18.67188 -18.25832 -18.16849 -17.94718 -17.61595 -16.69910 -16.56419 -16.49304 -16.24049 -15.64407 -14.96704 -14.73479 -14.56568 -14.21959 -14.04162 -13.87927 -13.87331 -13.63073 -12.95628 -12.84594 -12.82723 -12.53465 -12.49665 -12.37837 -12.10621 -11.79959 -11.50828 -11.43597 -11.28310 -11.14852 -10.58976 -10.07403 -8.62658 -8.23126 -6.34447 -0.44297 0.24113 1.35986 1.40750 1.40891 1.53702 1.58209 2.40561 2.53667 2.84853 3.10896 3.21257 3.51546 3.66142 3.98593 4.00769 4.03443 4.12277 4.33406 4.42338 4.56432 4.70252 4.77987 4.81079 4.86604 4.90900 5.04228 5.05695 5.24441 5.29796 5.33883 5.48408 5.62408 5.73422 5.79006 6.18033 6.35492 6.63305 6.81514 6.84333 7.35150 8.89331 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.002960 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.865783 B = 9458.728851 C =10386.449914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.138 4.138 3 C -0.062 4.062 4 C 0.022 3.978 5 F -0.147 7.147 6 C -0.065 4.065 7 C -0.200 4.200 8 C 0.511 3.489 9 O -0.535 6.535 10 O -0.354 6.354 11 C 0.080 3.920 12 C -0.095 4.095 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.064 0.936 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.278 1.278 22 C 0.267 3.733 23 N -0.849 5.849 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.171 0.829 28 H 0.143 0.857 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H -0.002 1.002 34 H -0.002 1.002 35 H 0.265 0.735 36 H 0.412 0.588 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.816 17.007 -0.643 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C -0.082 4.082 4 C 0.001 3.999 5 F -0.126 7.126 6 C -0.084 4.084 7 C -0.207 4.207 8 C 0.359 3.641 9 O -0.428 6.428 10 O -0.270 6.270 11 C 0.007 3.993 12 C -0.133 4.133 13 C -0.010 4.010 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.203 1.203 22 C 0.156 3.844 23 N -0.394 5.394 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.189 0.811 28 H 0.161 0.839 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.244 0.756 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -22.864 16.512 -0.669 28.211 hybrid contribution 1.283 -0.801 0.028 1.513 sum -21.581 15.711 -0.641 26.702 Atomic orbital electron populations 1.20764 0.87139 1.04584 1.03820 1.19633 0.98245 0.89367 1.07024 1.21356 0.91265 1.00129 0.95432 1.17351 0.90932 0.80506 1.11150 1.91482 1.81176 1.45126 1.94821 1.21226 1.01395 0.90125 0.95687 1.18443 0.91933 0.90085 1.20239 1.21282 0.81053 0.89534 0.72186 1.90613 1.69507 1.34142 1.48505 1.86538 1.20790 1.36673 1.83042 1.23163 0.92748 0.81398 1.02018 1.21469 0.90036 0.99365 1.02392 1.18929 0.94689 0.91869 0.95548 1.21649 0.92887 0.93368 1.50172 0.91797 1.25998 1.04408 0.94805 0.94662 1.70100 1.37039 0.98893 1.51310 0.85346 0.78772 0.78795 0.77821 1.18470 1.20312 1.20338 1.17694 0.88307 0.88407 0.90035 1.42938 1.19442 1.08696 1.68315 0.89570 0.90721 0.89071 0.81121 0.83891 0.91537 0.91702 0.91604 0.91547 0.98344 0.98401 0.92646 0.75566 0.75580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.44 71.23 0.67 -0.05 16 2 C -0.14 -1.97 5.89 -19.77 -0.12 -2.08 16 3 C -0.06 -0.91 9.65 22.34 0.22 -0.69 16 4 C 0.02 0.44 7.28 22.33 0.16 0.60 16 5 F -0.15 -3.26 17.26 44.97 0.78 -2.48 16 6 C -0.06 -1.55 9.58 22.58 0.22 -1.33 16 7 C -0.20 -5.13 5.89 -19.99 -0.12 -5.24 16 8 C 0.51 16.19 7.86 70.20 0.55 16.74 16 9 O -0.54 -18.10 13.61 19.77 0.27 -17.83 16 10 O -0.35 -12.19 9.49 -56.75 -0.54 -12.73 16 11 C 0.08 3.02 5.48 71.98 0.39 3.41 16 12 C -0.10 -4.01 5.53 30.59 0.17 -3.84 16 13 C 0.03 1.42 4.97 29.85 0.15 1.57 16 14 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 18 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.27 5.34 6.74 38.70 0.26 5.60 16 23 N -0.85 -14.84 8.08 -50.90 -0.41 -15.26 16 24 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.07 0.45 6.99 -2.38 -0.02 0.43 16 26 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 27 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.14 3.52 7.62 -2.91 -0.02 3.49 16 29 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.41 4.52 7.52 -92.71 -0.70 3.83 16 37 H 0.41 8.82 6.14 -92.71 -0.57 8.25 16 Total: -1.00 -67.91 322.93 5.50 -62.41 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -0.16 Total: 11.88 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.25 Total: -15.68 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -0.13 Total: -71.95 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.27 Total: -30.56 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.91 5.50 -62.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767306895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.545 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds